RLG00000033784

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000673
Physical Location & Seq
Forward (+)
32167263 .. 32167799
537 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033784

Sequence Viewer

Length: 423 bp
ATGAACTTCCTAGCTCTTCGCAATCCCAAAAATAAGGAGTGGAAATTTATCAAGGACGTGGCTTACGTGGATGGAAGTTTCTATTGTGCTGTGGATAGGAATTCAAAGGGCTCCTATTGCCTATTGGCAGTTCGTTCTAAGGAGCTCGATGGTGATGAATTTTTCTACCATATTTACCAATTTGATTTGCCACGAAAAGAATGGACAAGAGTTAAAAGTTTGGGAAACCGAGAATTGATGTCGCGTAGCTGTTTGTCAGTTGCGACTCCGGCGGTGGGGGTGATCTGTAAATTAGCAAACATATCTCCGTGCATGGCTCGGACTCGGACAGCTATGTTGGTTTTACTTGGGAAATTGAAGGCGAATGGAGATGGCGGCAATTTGATAGCATTATATCTCAGTAGGGACTACGATTTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.9

Weight (kDa)

9.13

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 244
AciI CCGC 2 cut(s) 272, 375
AcsI RAATTY 3 cut(s) 44, 100, 158
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 3 cut(s) 105, 358, 419
AjiI CACGTC 1 cut(s) 58
AluBI AGCT 4 cut(s) 14, 145, 249, 332
AluI AGCT 4 cut(s) 14, 145, 249, 332
Alw21I GWGCWC 1 cut(s) 147
ApoI RAATTY 3 cut(s) 44, 100, 158
ArsI GACNNNNNNTTYG 1 cut(s) 398
AsuHPI GGTGA 2 cut(s) 164, 292
BanII GRGCYC 2 cut(s) 113, 147
Bbv12I GWGCWC 1 cut(s) 147
BccI CCATC 3 cut(s) 65, 143, 365
BfaI CTAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 376
BlsI GCNGC 1 cut(s) 377
BmgBI CACGTC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 112
BsaAI YACGTR 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 412
Bsh1236I CGCG 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 113, 147
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 2 cut(s) 272, 375
BspCNI CTCAG 1 cut(s) 411
BspFNI CGCG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 21
BssMI GATC 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 138, 398
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 244
BstKTI GATC 1 cut(s) 285
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 2 cut(s) 117, 269
BstUI CGCG 1 cut(s) 244
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 1 cut(s) 76
CviAII CATG 1 cut(s) 313
CviJI RGCY 7 cut(s) 14, 62, 111, 145, 249, 317, 332
CviKI_1 RGCY 7 cut(s) 14, 62, 111, 145, 249, 317, 332
DdeI CTNAG 2 cut(s) 138, 398
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 145
Eco24I GRGCYC 2 cut(s) 113, 147
Eco53kI GAGCTC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 100
EcoT38I GRGCYC 2 cut(s) 113, 147
FaeI CATG 1 cut(s) 316
FaiI YATR 5 cut(s) 171, 302, 314, 335, 394
FaqI GGGAC 1 cut(s) 419
FatI CATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 376
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 2 cut(s) 113, 147
Fsp4HI GCNGC 1 cut(s) 376
FspBI CTAG 1 cut(s) 11
GluI GCNGC 1 cut(s) 376
HapII CCGG 1 cut(s) 269
Hin1II CATG 1 cut(s) 316
HinfI GANTC 2 cut(s) 265, 322
HpaII CCGG 1 cut(s) 269
HphI GGTGA 2 cut(s) 164, 292
Hpy188I TCNGA 2 cut(s) 321, 327
HpyAV CCTTC 1 cut(s) 352
HpyCH4IV ACGT 2 cut(s) 57, 66
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 269
HpyF3I CTNAG 2 cut(s) 138, 398
HpySE526I ACGT 2 cut(s) 57, 66
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 1 cut(s) 282
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 2 cut(s) 116, 142
LpnPI CCDG 1 cut(s) 282
MaeI CTAG 1 cut(s) 11
MaeII ACGT 2 cut(s) 57, 66
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 1 cut(s) 8
MhlI GDGCHC 2 cut(s) 113, 147
MluCI AATT 8 cut(s) 44, 100, 158, 179, 233, 290, 353, 379
MlyI GAGTC 2 cut(s) 259, 316
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 117, 269
NdeII GATC 1 cut(s) 282
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PkrI GCNGC 1 cut(s) 377
PleI GAGTC 2 cut(s) 259, 316
PpsI GAGTC 2 cut(s) 259, 316
Ppu21I YACGTR 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 376
Sau3AI GATC 1 cut(s) 282
SchI GAGTC 2 cut(s) 259, 316
SduI GDGCHC 2 cut(s) 113, 147
SetI ASST 6 cut(s) 16, 60, 69, 147, 251, 334
Sse9I AATT 8 cut(s) 44, 100, 158, 179, 233, 290, 353, 379
SsiI CCGC 2 cut(s) 272, 375
SspMI CTAG 1 cut(s) 11
SstI GAGCTC 1 cut(s) 147
TaiI ACGT 2 cut(s) 60, 69
TaqI TCGA 1 cut(s) 147
TasI AATT 8 cut(s) 44, 100, 158, 179, 233, 290, 353, 379
TauI GCSGC 1 cut(s) 378
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TspDTI ATGAA 2 cut(s) 17, 171
TspGWI ACGGA 1 cut(s) 297
XapI RAATTY 3 cut(s) 44, 100, 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 198
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.