Rh5BG256200

F-box kelch-repeat protein At1g57790-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
31924901 .. 31953468
28568 bp
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UTR
Exon/CDS
Intron
Rh5BG256200.1

Sequence Viewer

Length: 1410 bp
ATGAAAGATGCAGCTTCTTTGGTTGCCAAAACATCAAATAAAAATGTGAAGCTACTAAATGTAAGAAGGCTCAAGTTGCGTGGTGATGAGGTTATTTATGTGTTCTTTGGTTTGAAGGAAAGAATCGAGGAATGTTTTGAACTTGTGATCAAACCGAAAGGTGTTTGTGGCATTGATAAGAAAAATTCTAGCAGAAAGAAAAACTCGTGTGATCAAACTCAAGCAGATCGTACCCCTCCAATCCGTTCAAACCATCGTTGTTGGTCTGATCTTCCAGTTGACCTGTCAAGATCAGTGGCTGAACGTCTCATATATCCTGATTTTCTTCGCTTTCGTGCAGTATGCAAAAACTGGCAGCGAGCTTTTTCCGACGACGATGACCTTCAGCGACGTGCAGTATTTCCTTTGATACGGGTTGACAGTTCTCATTACTTCCACTATACCAAAACCCAAACAGTTTGTACAGCGCGCTTCTTTGATTTGCTGTCCCCATTACAAGTCTTCCCTATCAGAAACGTGGTAAAAGAACAAGTGCAAAAAGAGGACCTCGTTTATCCAAGCTTTTGTTGTTCGTACTCCAATTGGTTGCTGTTGTTAAAATCAGATCCCTCAGATTACTATGAAGAGATAAATTCCAGATTCTTTGTTCATAATCCTTTTCGCAGCGAGACTGTGGAATTGCATCTGCCTCCATCAGTTTCGCGGCACTACCTTTCCAGAGAGGTAGAGGTAGCAGGCTTCTCGACCTCTCCAACTTCTCTGGATTGTGTTATCTTTCTCCTGTGGAAAATTCATAAATGCAATGGTTATGATTCTGATCCTAATTACGAGGAGTGGAATGAGTTCTTTATTACCACGTACAACAGAAAACATCGAAACCAAAAGTGTAGAAGTTGGAGTGTGCATAAACTTCCTCATCGCAATCCCAAAAATAAGGAGTGGAAGTTCATCAAGGACGTGGCTTACATGGATGGAAGTTTCTATTGTGCTGTGGATATGAATTCAAAGGTTGTATTGGGTACCTTCAATGTAGCACTTCAAGAGTGGGTTATGATGATGAAGAGATCCTTGAGACTACCATCTCGTCCAGAACTCATGAACTTGGTTAAATATAATGAAGGGCTACTATTGACAGTTTGTTATAAGGAGCAAGATGGTGATGAATTTTTCTTCCATATTTACCAGTTTGATTTGTCACGAAAAGAATGGACAAGAGTTAAAAGTTTGGGAAACCAAGTATTGATGTTGCATAGCCGTCCGTCAGTTGCGACTCCGGCGGTGGGGATGATCAGTAAATTAGCAAACATGATATTTGTCCGTGGCTTGAACTCTGACAACTATGTTGCTTTTACTTGGGAAGTTGAAGGCGAATGGAGACGGCGGCAATTAGATAGCATTATATCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

55.19

Weight (kDa)

9.1

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 88 - 126 2.1e-06 F-box domain
Beta-prop_KIB1-4 PF03478 176 - 439 2.9e-19 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1143
Acc65I GGTACC 1 cut(s) 1019
AccB1I GGYRCC 1 cut(s) 1019
AccII CGCG 2 cut(s) 469, 703
AciI CCGC 3 cut(s) 703, 1277, 1381
AclWI GGATC 3 cut(s) 599, 812, 1059
AcsI RAATTY 5 cut(s) 184, 631, 789, 1000, 1163
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 5 cut(s) 232, 463, 575, 860, 1021
AfiI CCNNNNNNNGG 1 cut(s) 1280
AgsI TTSAA 8 cut(s) 115, 140, 249, 1005, 1027, 1040, 1327, 1364
AjiI CACGTC 2 cut(s) 392, 958
AloI GAACNNNNNNTCC 2 cut(s) 929, 961
AluBI AGCT 4 cut(s) 14, 52, 362, 561
AluI AGCT 4 cut(s) 14, 52, 362, 561
Alw26I GTCTC 4 cut(s) 311, 662, 1066, 1369
AlwI GGATC 3 cut(s) 599, 812, 1059
AlwNI CAGNNNCTG 1 cut(s) 299
ApeKI GCWGC 3 cut(s) 11, 355, 663
ApoI RAATTY 5 cut(s) 184, 631, 789, 1000, 1163
Asp700I GAANNNNTTC 1 cut(s) 842
Asp718I GGTACC 1 cut(s) 1019
AspLEI GCGC 2 cut(s) 469, 471
AspS9I GGNCC 1 cut(s) 544
AsuHPI GGTGA 2 cut(s) 95, 1169
AvaII GGWCC 1 cut(s) 544
BanI GGYRCC 1 cut(s) 1019
BauI CACGAG 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 493
BbvI GCAGC 3 cut(s) 23, 367, 675
BccI CCATC 5 cut(s) 261, 700, 965, 1087, 1148
BceAI ACGGC 2 cut(s) 1239, 1394
BcgI CGANNNNNNTGC 2 cut(s) 723, 757
BclI TGATCA 3 cut(s) 147, 211, 1287
BcoDI GTCTC 4 cut(s) 311, 662, 1066, 1369
BfaI CTAG 1 cut(s) 189
BisI GCNGC 5 cut(s) 12, 356, 664, 704, 1382
BlsI GCNGC 5 cut(s) 13, 357, 665, 705, 1383
Bme18I GGWCC 1 cut(s) 544
BmgBI CACGTC 2 cut(s) 392, 958
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 1 cut(s) 1021
BmsI GCATC 1 cut(s) 691
BpiI GAAGAC 1 cut(s) 493
BpuEI CTTGAG 3 cut(s) 56, 204, 1090
BsaAI YACGTR 1 cut(s) 858
BsaBI GATNNNNATC 1 cut(s) 816
BsaJI CCNNGG 1 cut(s) 1318
BsaXI ACNNNNNCTCC 2 cut(s) 929, 959
Bsc4I CCNNNNNNNGG 1 cut(s) 1280
Bse1I ACTGG 3 cut(s) 275, 356, 1183
Bse3DI GCAATG 1 cut(s) 808
Bse8I GATNNNNATC 1 cut(s) 816
BseDI CCNNGG 1 cut(s) 1318
BseGI GGATG 2 cut(s) 976, 1290
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 1 cut(s) 1280
BseMI GCAATG 1 cut(s) 808
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 3 cut(s) 275, 356, 1183
BsePI GCGCGC 1 cut(s) 467
BseRI GAGGAG 1 cut(s) 845
BseXI GCAGC 3 cut(s) 23, 367, 675
BsgI GTGCAG 2 cut(s) 357, 414
Bsh1236I CGCG 2 cut(s) 469, 703
BshNI GGYRCC 1 cut(s) 1019
BsiSI CCGG 1 cut(s) 1274
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 1280
BsmAI GTCTC 4 cut(s) 311, 662, 1066, 1369
BsmBI CGTCTC 2 cut(s) 311, 1369
BsmFI GGGAC 1 cut(s) 472
Bsp1407I TGTACA 1 cut(s) 461
Bsp143I GATC 9 cut(s) 147, 211, 226, 268, 290, 604, 817, 1064, 1287
BspACI CCGC 3 cut(s) 703, 1277, 1381
BspCNI CTCAG 1 cut(s) 623
BspFNI CGCG 2 cut(s) 469, 703
BspHI TCATGA 1 cut(s) 1095
BspLI GGNNCC 1 cut(s) 1021
BspPI GGATC 3 cut(s) 599, 812, 1059
BspT107I GGYRCC 1 cut(s) 1019
BsrDI GCAATG 1 cut(s) 808
BsrGI TGTACA 1 cut(s) 461
BsrI ACTGG 3 cut(s) 275, 356, 1183
BssECI CCNNGG 1 cut(s) 1318
BssHII GCGCGC 1 cut(s) 467
BssMI GATC 9 cut(s) 147, 211, 226, 268, 290, 604, 817, 1064, 1287
BssSI CACGAG 1 cut(s) 205
Bst2BI CACGAG 1 cut(s) 205
Bst4CI ACNGT 4 cut(s) 422, 457, 673, 1135
Bst6I CTCTTC 2 cut(s) 618, 1055
BstAUI TGTACA 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 858
BstC8I GCNNGC 3 cut(s) 360, 469, 736
BstDEI CTNAG 2 cut(s) 610, 1404
BstDSI CCRYGG 1 cut(s) 1318
BstF5I GGATG 2 cut(s) 976, 1290
BstFNI CGCG 2 cut(s) 469, 703
BstHHI GCGC 2 cut(s) 469, 471
BstKTI GATC 9 cut(s) 150, 214, 229, 271, 293, 607, 820, 1067, 1290
BstMAI GTCTC 4 cut(s) 311, 662, 1066, 1369
BstMBI GATC 9 cut(s) 147, 211, 226, 268, 290, 604, 817, 1064, 1287
BstMWI GCNNNNNNNGC 2 cut(s) 76, 1274
BstUI CGCG 2 cut(s) 469, 703
BstV1I GCAGC 3 cut(s) 23, 367, 675
BstV2I GAAGAC 1 cut(s) 493
BstX2I RGATCY 2 cut(s) 604, 1064
BstYI RGATCY 2 cut(s) 604, 1064
BtgI CCRYGG 1 cut(s) 1318
BtgZI GCGATG 1 cut(s) 902
BtrI CACGTC 2 cut(s) 392, 958
BtsCI GGATG 2 cut(s) 976, 1290
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 3 cut(s) 360, 469, 736
CaiI CAGNNNCTG 1 cut(s) 299
CciI TCATGA 1 cut(s) 1095
CfoI GCGC 2 cut(s) 469, 471
Cfr13I GGNCC 1 cut(s) 544
Csp6I GTAC 5 cut(s) 231, 462, 574, 859, 1020
CspCI CAANNNNNGTGG 4 cut(s) 61, 96, 276, 311
CviAII CATG 3 cut(s) 967, 1096, 1306
CviQI GTAC 5 cut(s) 231, 462, 574, 859, 1020
DdeI CTNAG 2 cut(s) 610, 1404
DpnI GATC 9 cut(s) 149, 213, 228, 270, 292, 606, 819, 1066, 1289
DpnII GATC 9 cut(s) 147, 211, 226, 268, 290, 604, 817, 1064, 1287
Eam1104I CTCTTC 2 cut(s) 618, 1055
EarI CTCTTC 2 cut(s) 618, 1055
Eco47I GGWCC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 544
EcoRI GAATTC 1 cut(s) 1000
Esp3I CGTCTC 2 cut(s) 311, 1369
FaeI CATG 3 cut(s) 970, 1099, 1309
FalI AAGNNNNNCTT 2 cut(s) 1052, 1084
FaqI GGGAC 1 cut(s) 472
FatI CATG 3 cut(s) 966, 1095, 1305
FbaI TGATCA 3 cut(s) 147, 211, 1287
Fnu4HI GCNGC 5 cut(s) 12, 356, 664, 704, 1382
FokI GGATG 2 cut(s) 983, 1297
Fsp4HI GCNGC 5 cut(s) 12, 356, 664, 704, 1382
FspBI CTAG 1 cut(s) 189
GlaI GCGC 2 cut(s) 468, 470
GluI GCNGC 5 cut(s) 12, 356, 664, 704, 1382
HapII CCGG 1 cut(s) 1274
HhaI GCGC 2 cut(s) 469, 471
Hin1II CATG 3 cut(s) 970, 1099, 1309
Hin6I GCGC 2 cut(s) 467, 469
HinP1I GCGC 2 cut(s) 467, 469
HincII GTYRAC 2 cut(s) 280, 418
HindII GTYRAC 2 cut(s) 280, 418
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 4 cut(s) 123, 639, 812, 1270
HpaII CCGG 1 cut(s) 1274
HphI GGTGA 2 cut(s) 95, 1169
Hpy166II GTNNAC 2 cut(s) 280, 418
Hpy188I TCNGA 7 cut(s) 268, 370, 512, 604, 613, 817, 1333
Hpy8I GTNNAC 2 cut(s) 280, 418
Hpy99I CGWCG 3 cut(s) 374, 377, 393
HpyAV CCTTC 6 cut(s) 60, 109, 392, 1033, 1112, 1358
HpyCH4III ACNGT 4 cut(s) 422, 457, 673, 1135
HpyCH4IV ACGT 5 cut(s) 304, 391, 516, 857, 957
HpyCH4V TGCA 9 cut(s) 11, 338, 345, 395, 535, 682, 801, 904, 1249
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 1274
HpyF3I CTNAG 2 cut(s) 610, 1404
HpySE526I ACGT 5 cut(s) 304, 391, 516, 857, 957
Hsp92II CATG 3 cut(s) 970, 1099, 1309
HspAI GCGC 2 cut(s) 467, 469
KpnI GGTACC 1 cut(s) 1023
Ksp22I TGATCA 3 cut(s) 147, 211, 1287
Kzo9I GATC 9 cut(s) 147, 211, 226, 268, 290, 604, 817, 1064, 1287
LmnI GCTCC 1 cut(s) 1147
Lsp1109I GCAGC 3 cut(s) 23, 367, 675
LweI GCATC 1 cut(s) 691
MaeI CTAG 1 cut(s) 189
MaeII ACGT 5 cut(s) 304, 391, 516, 857, 957
MaeIII GTNAC 1 cut(s) 1194
MalI GATC 9 cut(s) 149, 213, 228, 270, 292, 606, 819, 1066, 1289
MboI GATC 9 cut(s) 147, 211, 226, 268, 290, 604, 817, 1064, 1287
MboII GAAGA 6 cut(s) 263, 317, 493, 635, 1072, 1162
MfeI CAATTG 1 cut(s) 580
MflI RGATCY 2 cut(s) 604, 1064
MlyI GAGTC 1 cut(s) 1264
MmeI TCCRAC 3 cut(s) 393, 776, 875
MroXI GAANNNNTTC 1 cut(s) 842
MseI TTAA 3 cut(s) 596, 1107, 1218
MspI CCGG 1 cut(s) 1274
MunI CAATTG 1 cut(s) 580
MvnI CGCG 2 cut(s) 469, 703
MwoI GCNNNNNNNGC 2 cut(s) 76, 1274
NdeII GATC 9 cut(s) 147, 211, 226, 268, 290, 604, 817, 1064, 1287
NlaIII CATG 3 cut(s) 970, 1099, 1309
NlaIV GGNNCC 1 cut(s) 1021
NmuCI GTSAC 1 cut(s) 1194
PagI TCATGA 1 cut(s) 1095
PauI GCGCGC 1 cut(s) 467
PdmI GAANNNNTTC 1 cut(s) 842
PfeI GAWTC 3 cut(s) 123, 639, 812
PkrI GCNGC 5 cut(s) 13, 357, 665, 705, 1383
PleI GAGTC 1 cut(s) 1264
PpsI GAGTC 1 cut(s) 1264
Ppu21I YACGTR 1 cut(s) 858
PpuMI RGGWCCY 1 cut(s) 544
PsiI TTATAA 1 cut(s) 1143
Psp5II RGGWCCY 1 cut(s) 544
PspN4I GGNNCC 1 cut(s) 1021
PspPI GGNCC 1 cut(s) 544
PspPPI RGGWCCY 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 299
PsuI RGATCY 2 cut(s) 604, 1064
PteI GCGCGC 1 cut(s) 467
RsaI GTAC 5 cut(s) 232, 463, 575, 860, 1021
RsaNI GTAC 5 cut(s) 231, 462, 574, 859, 1020
SaqAI TTAA 3 cut(s) 596, 1107, 1218
SatI GCNGC 5 cut(s) 12, 356, 664, 704, 1382
Sau3AI GATC 9 cut(s) 147, 211, 226, 268, 290, 604, 817, 1064, 1287
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 1 cut(s) 1264
SfaNI GCATC 1 cut(s) 691
SinI GGWCC 1 cut(s) 544
SmlI CTYRAG 3 cut(s) 71, 219, 1069
SmoI CTYRAG 3 cut(s) 71, 219, 1069
SsiI CCGC 3 cut(s) 703, 1277, 1381
SspMI CTAG 1 cut(s) 189
TaaI ACNGT 4 cut(s) 422, 457, 673, 1135
TaiI ACGT 5 cut(s) 307, 394, 519, 860, 960
TaqI TCGA 3 cut(s) 126, 743, 874
TatI WGTACW 1 cut(s) 461
TauI GCSGC 2 cut(s) 706, 1384
TfiI GAWTC 3 cut(s) 123, 639, 812
Tru1I TTAA 3 cut(s) 596, 1107, 1218
Tru9I TTAA 3 cut(s) 596, 1107, 1218
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 1 cut(s) 1194
TseI GCWGC 3 cut(s) 11, 355, 663
Tsp45I GTSAC 1 cut(s) 1194
TspGWI ACGGA 3 cut(s) 233, 1248, 1307
TspRI CASTG 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 5 cut(s) 184, 631, 789, 1000, 1163
XmnI GAANNNNTTC 1 cut(s) 842
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.