Rmu_sc0006633.1_g000002

F-box kelch-repeat protein At1g57790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006633.1
OG0000673
Physical Location & Seq
Reverse (-)
6133 .. 7237
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006633.1_g000002.1.cds

Sequence Viewer

Length: 1017 bp
atgacacaatcacaccaacactgttggtctgatcttccggtcgatctgttaacagaagtgactgaacgtctatcataccgtgatgctcttcgctttagcgtcgtatgcaaacaatggcagctagctactcccgacgaccgacgtgtaatactgttgcagggacgctgttacagccgtaagcgccccctaggtgctattgaaacctattgtgaagccaggtacgttgatttgacgtcgcaagggatttcgagtttctgcatcacaaacgtggtcgtgagtcaccagcctatacaaagagtaaagataagacgttctttgttcataatcctcttcgcaaaagtgactatggaattggaactgcctccatttagttgcgcaaaggttcaggtagcaaccttgacgaccactccaacttctcccgattgtattatttttatcctatggaaaaccaattttagtgtaattaatatttacagtattacaacatataaccaacgagatagaacatggagtatctataatattccaccttaccgaggcggaattagaacctcattctacataggtctccatttggatggtgcaatcaggggcgtggcttgtgcggatggaattttctattttcttgtagttaccaactcgtcggaaattatattgggcaccttcgatgcagcacttcaaaagtgggttctaaaggacaagccccgctccacactgaaactaccatatcgtccggtacatctttacctggttaaatctgatggggagctcttattggccgtctatcatcaacagcaaggtagtggtgaacttttgtgccctgaggtttaccgatttgattatttgtcacaaaagaattggacaagagttaataatttaggaggtcgggttctgattttgagtccctcatgttcgatttcgactccagcagtgggggttacaagtaaatttgcaaacatgatatatgctgaggatgtggagtgcatcccgacattggagaagtacaacattgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

338

Amino Acids

38.44

Weight (kDa)

8.89

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 236
Acc16I TGCGCA 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 659
AccBSI CCGCTC 1 cut(s) 708
AciI CCGC 3 cut(s) 540, 605, 706
AcoI YGGCCR 1 cut(s) 777
AcsI RAATTY 2 cut(s) 612, 947
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 3 cut(s) 221, 738, 1004
AfiI CCNNNNNNNGG 3 cut(s) 536, 932, 994
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 2 cut(s) 200, 680
AhdI GACNNNNNGTC 1 cut(s) 66
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 2 cut(s) 215, 747
AleI CACNNNNGTG 1 cut(s) 266
AloI GAACNNNNNNTCC 2 cut(s) 873, 905
AluBI AGCT 3 cut(s) 121, 125, 769
AluI AGCT 3 cut(s) 121, 125, 769
Alw21I GWGCWC 1 cut(s) 771
Alw26I GTCTC 1 cut(s) 572
AoxI GGCC 1 cut(s) 777
ApeKI GCWGC 2 cut(s) 118, 671
ApoI RAATTY 2 cut(s) 612, 947
AseI ATTAAT 1 cut(s) 465
AspA2I CCTAGG 1 cut(s) 187
AspLEI GCGC 2 cut(s) 183, 377
AsuHPI GGTGA 2 cut(s) 272, 818
AsuNHI GCTAGC 1 cut(s) 121
AvrII CCTAGG 1 cut(s) 187
AxyI CCTNAGG 1 cut(s) 822
BaeGI GKGCMC 2 cut(s) 662, 821
BanI GGYRCC 1 cut(s) 659
BanII GRGCYC 1 cut(s) 771
Bbv12I GWGCWC 1 cut(s) 771
BbvCI CCTCAGC 1 cut(s) 969
BbvI GCAGC 2 cut(s) 130, 683
BccI CCATC 3 cut(s) 572, 602, 755
BceAI ACGGC 2 cut(s) 159, 764
BciT130I CCWGG 2 cut(s) 217, 749
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 2 cut(s) 122, 188
BfoI RGCGCY 1 cut(s) 184
BisI GCNGC 2 cut(s) 119, 672
BlnI CCTAGG 1 cut(s) 187
BlsI GCNGC 2 cut(s) 120, 673
Bme1390I CCNGG 2 cut(s) 217, 749
BmeRI GACNNNNNGTC 1 cut(s) 66
BmgBI CACGTC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 661
BmrFI CCNGG 2 cut(s) 217, 749
BmsI GCATC 4 cut(s) 73, 267, 658, 993
BmtI GCTAGC 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 909
Bpu10I CCTNAGC 1 cut(s) 969
BsaHI GRCGYC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 2 cut(s) 187, 535
BsaWI WCCGGW 2 cut(s) 37, 733
BsaXI ACNNNNNCTCC 4 cut(s) 391, 421, 873, 903
Bsc4I CCNNNNNNNGG 3 cut(s) 536, 932, 994
Bse21I CCTNAGG 1 cut(s) 822
Bse3DI GCAATG 1 cut(s) 1008
BseBI CCWGG 2 cut(s) 217, 749
BseDI CCNNGG 2 cut(s) 187, 535
BseGI GGATG 4 cut(s) 583, 613, 979, 984
BseLI CCNNNNNNNGG 3 cut(s) 536, 932, 994
BseMI GCAATG 1 cut(s) 1008
BseMII CTCAG 2 cut(s) 813, 960
BseSI GKGCMC 2 cut(s) 662, 821
BseXI GCAGC 2 cut(s) 130, 683
Bsh1285I CGRYCG 2 cut(s) 42, 139
BshFI GGCC 1 cut(s) 779
BshNI GGYRCC 1 cut(s) 659
BsiEI CGRYCG 2 cut(s) 42, 139
BsiHKAI GWGCWC 1 cut(s) 771
BsiSI CCGG 2 cut(s) 38, 734
BslFI GGGAC 2 cut(s) 174, 888
BslI CCNNNNNNNGG 3 cut(s) 536, 932, 994
BsmAI GTCTC 1 cut(s) 572
BsmFI GGGAC 2 cut(s) 174, 888
BsnI GGCC 1 cut(s) 779
Bso31I GGTCTC 1 cut(s) 572
Bsp1286I GDGCHC 3 cut(s) 662, 771, 821
Bsp143I GATC 2 cut(s) 31, 43
BspACI CCGC 3 cut(s) 540, 605, 706
BspANI GGCC 1 cut(s) 779
BspCNI CTCAG 2 cut(s) 814, 961
BspLI GGNNCC 1 cut(s) 661
BspOI GCTAGC 1 cut(s) 125
BspQI GCTCTTC 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 572
BsrBI CCGCTC 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 1008
BssECI CCNNGG 2 cut(s) 187, 535
BssMI GATC 2 cut(s) 31, 43
BssNI GRCGYC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 2 cut(s) 217, 749
Bst4CI ACNGT 4 cut(s) 23, 80, 153, 476
Bst6I CTCTTC 2 cut(s) 93, 335
BstACI GRCGYC 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 822, 969
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 4 cut(s) 583, 613, 979, 984
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 2 cut(s) 183, 377
BstKTI GATC 2 cut(s) 34, 46
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 2 cut(s) 31, 43
BstMCI CGRYCG 2 cut(s) 42, 139
BstMWI GCNNNNNNNGC 3 cut(s) 105, 171, 180
BstNI CCWGG 2 cut(s) 217, 749
BstSCI CCNGG 2 cut(s) 215, 747
BstSLI GKGCMC 2 cut(s) 662, 821
BstV1I GCAGC 2 cut(s) 130, 683
BstXI CCANNNNNNTGG 1 cut(s) 578
Bsu36I CCTNAGG 1 cut(s) 822
BsuRI GGCC 1 cut(s) 779
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 4 cut(s) 583, 613, 979, 984
BtsI GCAGTG 1 cut(s) 936
BtsIMutI CAGTG 3 cut(s) 19, 713, 936
Cac8I GCNNGC 1 cut(s) 123
CfoI GCGC 2 cut(s) 183, 377
CseI GACGC 2 cut(s) 88, 171
CsiI ACCWGGT 1 cut(s) 747
Csp6I GTAC 3 cut(s) 220, 737, 1003
CviAII CATG 3 cut(s) 507, 909, 958
CviJI RGCY 9 cut(s) 121, 125, 174, 215, 286, 599, 703, 769, 779
CviKI_1 RGCY 9 cut(s) 121, 125, 174, 215, 286, 599, 703, 769, 779
CviQI GTAC 3 cut(s) 220, 737, 1003
DdeI CTNAG 2 cut(s) 822, 969
DpnI GATC 2 cut(s) 33, 45
DpnII GATC 2 cut(s) 31, 43
DriI GACNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 2 cut(s) 93, 335
Eam1105I GACNNNNNGTC 1 cut(s) 66
EarI CTCTTC 2 cut(s) 93, 335
EciI GGCGGA 1 cut(s) 555
Ecl136II GAGCTC 1 cut(s) 769
Eco130I CCWWGG 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 771
Eco31I GGTCTC 1 cut(s) 572
Eco53kI GAGCTC 1 cut(s) 769
Eco81I CCTNAGG 1 cut(s) 822
EcoICRI GAGCTC 1 cut(s) 769
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoRII CCWGG 2 cut(s) 215, 747
EcoT14I CCWWGG 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 771
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 3 cut(s) 510, 912, 961
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FaqI GGGAC 2 cut(s) 174, 888
FatI CATG 3 cut(s) 506, 908, 957
FauI CCCGC 1 cut(s) 713
Fnu4HI GCNGC 2 cut(s) 119, 672
FokI GGATG 4 cut(s) 590, 620, 971, 986
FriOI GRGCYC 1 cut(s) 771
Fsp4HI GCNGC 2 cut(s) 119, 672
FspBI CTAG 2 cut(s) 122, 188
FspI TGCGCA 1 cut(s) 376
GlaI GCGC 2 cut(s) 182, 376
GluI GCNGC 2 cut(s) 119, 672
GsuI CTGGAG 1 cut(s) 909
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 1 cut(s) 779
HapII CCGG 2 cut(s) 38, 734
HgaI GACGC 2 cut(s) 88, 171
HhaI GCGC 2 cut(s) 183, 377
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 3 cut(s) 510, 912, 961
Hin6I GCGC 2 cut(s) 181, 375
HinP1I GCGC 2 cut(s) 181, 375
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 3 cut(s) 277, 901, 922
HpaI GTTAAC 1 cut(s) 51
HpaII CCGG 2 cut(s) 38, 734
HphI GGTGA 2 cut(s) 272, 818
Hpy166II GTNNAC 3 cut(s) 51, 809, 829
Hpy188I TCNGA 4 cut(s) 31, 646, 760, 894
Hpy188III TCNNGA 4 cut(s) 131, 274, 419, 988
Hpy8I GTNNAC 3 cut(s) 51, 809, 829
Hpy99I CGWCG 5 cut(s) 104, 137, 144, 238, 646
HpyAV CCTTC 1 cut(s) 673
HpyCH4III ACNGT 4 cut(s) 23, 80, 153, 476
HpyCH4IV ACGT 6 cut(s) 67, 142, 222, 233, 267, 310
HpyCH4V TGCA 7 cut(s) 108, 157, 258, 584, 671, 953, 984
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 171, 180
HpyF3I CTNAG 2 cut(s) 822, 969
HpySE526I ACGT 6 cut(s) 67, 142, 222, 233, 267, 310
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 3 cut(s) 510, 912, 961
HspAI GCGC 2 cut(s) 181, 375
KspAI GTTAAC 1 cut(s) 51
Kzo9I GATC 2 cut(s) 31, 43
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 713, 766
Lsp1109I GCAGC 2 cut(s) 130, 683
LweI GCATC 4 cut(s) 73, 267, 658, 993
MabI ACCWGGT 1 cut(s) 747
MaeI CTAG 2 cut(s) 122, 188
MaeII ACGT 6 cut(s) 67, 142, 222, 233, 267, 310
MaeIII GTNAC 7 cut(s) 58, 167, 278, 340, 631, 846, 937
MalI GATC 2 cut(s) 33, 45
MbiI CCGCTC 1 cut(s) 708
MboI GATC 2 cut(s) 31, 43
MboII GAAGA 3 cut(s) 26, 80, 322
MhlI GDGCHC 3 cut(s) 662, 771, 821
MluCI AATT 9 cut(s) 350, 451, 462, 543, 612, 648, 856, 874, 947
MlyI GAGTC 3 cut(s) 286, 910, 916
MmeI TCCRAC 2 cut(s) 434, 624
MnlI CCTC 8 cut(s) 338, 372, 530, 562, 817, 875, 916, 964
MseI TTAA 5 cut(s) 50, 465, 753, 870, 1015
MslI CAYNNNNRTG 2 cut(s) 266, 576
MspI CCGG 2 cut(s) 38, 734
MspR9I CCNGG 2 cut(s) 217, 749
MvaI CCWGG 2 cut(s) 217, 749
MwoI GCNNNNNNNGC 3 cut(s) 105, 171, 180
NdeII GATC 2 cut(s) 31, 43
NheI GCTAGC 1 cut(s) 121
NlaIII CATG 3 cut(s) 510, 912, 961
NlaIV GGNNCC 1 cut(s) 661
NmuCI GTSAC 4 cut(s) 58, 278, 340, 846
NsbI TGCGCA 1 cut(s) 376
OliI CACNNNNGTG 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 93
PkrI GCNGC 2 cut(s) 120, 673
PleI GAGTC 3 cut(s) 285, 909, 916
PpsI GAGTC 3 cut(s) 285, 909, 916
PshBI ATTAAT 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 771
Psp6I CCWGG 2 cut(s) 215, 747
PspGI CCWGG 2 cut(s) 215, 747
PspN4I GGNNCC 1 cut(s) 661
RsaI GTAC 3 cut(s) 221, 738, 1004
RsaNI GTAC 3 cut(s) 220, 737, 1003
RseI CAYNNNNRTG 2 cut(s) 266, 576
SacI GAGCTC 1 cut(s) 771
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 5 cut(s) 50, 465, 753, 870, 1015
SatI GCNGC 2 cut(s) 119, 672
Sau3AI GATC 2 cut(s) 31, 43
SchI GAGTC 3 cut(s) 286, 910, 916
ScrFI CCNGG 2 cut(s) 217, 749
SduI GDGCHC 3 cut(s) 662, 771, 821
SexAI ACCWGGT 1 cut(s) 747
SfaNI GCATC 4 cut(s) 73, 267, 658, 993
SmiMI CAYNNNNRTG 2 cut(s) 266, 576
Sse9I AATT 9 cut(s) 350, 451, 462, 543, 612, 648, 856, 874, 947
SsiI CCGC 3 cut(s) 540, 605, 706
SspI AATATT 2 cut(s) 469, 523
SspMI CTAG 2 cut(s) 122, 188
SstI GAGCTC 1 cut(s) 771
StyD4I CCNGG 2 cut(s) 215, 747
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 4 cut(s) 23, 80, 153, 476
TaiI ACGT 6 cut(s) 70, 145, 225, 236, 270, 313
TaqI TCGA 5 cut(s) 42, 248, 666, 914, 920
TaqII GACCGA 1 cut(s) 153
TasI AATT 9 cut(s) 350, 451, 462, 543, 612, 648, 856, 874, 947
TatI WGTACW 1 cut(s) 1002
Tru1I TTAA 5 cut(s) 50, 465, 753, 870, 1015
Tru9I TTAA 5 cut(s) 50, 465, 753, 870, 1015
TscAI CASTG 3 cut(s) 26, 720, 936
TseFI GTSAC 4 cut(s) 58, 278, 340, 846
TseI GCWGC 2 cut(s) 118, 671
Tsp45I GTSAC 4 cut(s) 58, 278, 340, 846
TspDTI ATGAA 1 cut(s) 310
TspRI CASTG 3 cut(s) 26, 720, 936
VspI ATTAAT 1 cut(s) 465
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 2 cut(s) 612, 947
XmaJI CCTAGG 1 cut(s) 187
XspI CTAG 2 cut(s) 122, 188
ZraI GACGTC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.