Rroxscaffold_6G00425070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000673
Physical Location & Seq
Forward (+)
46094196 .. 46095360
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425070.1

Sequence Viewer

Length: 936 bp
ATGCCAATTGAAATCTTAACCTCAGTTGCTGAACGTCTCTCACCTACACCAATCACTGCTGATATCAATCTTTTTCACTTTGGTTCCGTCTGCAAAACTTGGCGACAAGCTAGCTTTCGTGCTGGAGTTCGACGTCGTTCAAGTATGCCATGGCTAATTAACGGCGAATACGAGTTGATTTGCAGAAACTTACCAGCATTGAAGTGTCAGTTCTCCGATTTCTGGTCCAAACAAATTTTATACTCCTATGCAGAAGTCTTACCGAAAAAATTGTGGAGAAACCCTACTGCACATGCTTCAAAAAATGGCTGGTTGCTTTTGTCGACGGATGAGTATGGCGAATGGAAAGATCAGGATATACACTGTGACATGGAACTATTTGATGTGGCATATATGGACGGAGCTTTCTATTGCGTTTTTTCAGACGGAATTTCGATAGTATTGCATGTCTTCACATTTAGAAGACGGAGCTTTCTGTCGCGTCTTAAGAAAGCCATTGGACAAGCTGATGATGTTGAACAAAGTGAGCCATTCGTTATCTCCTCCTCCTCCTCTTCCTTAAGAAAGAAGGAGAATGATGATCTCTACTTAGTTGAGGCTGATGGGGATCTCTTATTAGCAATTTGTTCTCTTGATGACACTAGCAGTTATTGTCACATATTCCGGTTGGATCCGTCACGTAAAAAATGGAATCGAATTAGAAACTTGGGAAATCGAGTAATGATTTTGTCTAGCGATGCTGTTGGATCGGTTGTAGTTCCTGCGGTGCGAGATGCTAAAGAATTTGCAAACACGATCTTTGTTTGTCGAGACTCAAAGCATGAGCATTATATCTGCAAAAGTACTGAAGCCACTTGGATATTTGACAAAGTGCATCATTTAAATCCTCCTGCAGCAGGCAGTGCTCTCATTGAACCCCCTGACTTATGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

35.56

Weight (kDa)

6.55

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 109 - 274 1.9e-15 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 136
AccI GTMKAC 1 cut(s) 323
AccII CGCG 1 cut(s) 481
AciI CCGC 1 cut(s) 764
AclWI GGATC 4 cut(s) 615, 665, 678, 754
AcsI RAATTY 3 cut(s) 234, 429, 782
AcuI CTGAAG 1 cut(s) 867
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 1 cut(s) 844
AfiI CCNNNNNNNGG 2 cut(s) 222, 896
AflII CTTAAG 2 cut(s) 485, 559
AgsI TTSAA 6 cut(s) 11, 141, 202, 300, 518, 914
AluBI AGCT 5 cut(s) 110, 114, 404, 471, 506
AluI AGCT 5 cut(s) 110, 114, 404, 471, 506
Alw21I GWGCWC 1 cut(s) 907
Alw26I GTCTC 2 cut(s) 41, 804
AlwI GGATC 4 cut(s) 615, 665, 678, 754
AlwNI CAGNNNCTG 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 893
ApoI RAATTY 3 cut(s) 234, 429, 782
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 33
AsuNHI GCTAGC 1 cut(s) 110
AvaII GGWCC 1 cut(s) 225
BamHI GGATCC 1 cut(s) 670
BbsI GAAGAC 2 cut(s) 442, 469
Bbv12I GWGCWC 1 cut(s) 907
BbvI GCAGC 1 cut(s) 905
BccI CCATC 1 cut(s) 596
BceAI ACGGC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BcoDI GTCTC 2 cut(s) 41, 804
BfaI CTAG 3 cut(s) 111, 642, 732
BfmI CTRYAG 1 cut(s) 891
BfrI CTTAAG 2 cut(s) 485, 559
BisI GCNGC 1 cut(s) 894
BlsI GCNGC 1 cut(s) 895
BmcAI AGTACT 1 cut(s) 844
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 2 cut(s) 85, 672
BmsI GCATC 3 cut(s) 727, 763, 883
BmtI GCTAGC 1 cut(s) 114
BpiI GAAGAC 2 cut(s) 442, 469
BpmI CTGGAG 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 680
BsaBI GATNNNNATC 2 cut(s) 66, 606
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 663
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 896
Bse8I GATNNNNATC 2 cut(s) 66, 606
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 2 cut(s) 66, 606
BseLI CCNNNNNNNGG 2 cut(s) 222, 896
BseMII CTCAG 1 cut(s) 36
BseRI GAGGAG 4 cut(s) 532, 535, 538, 541
BseXI GCAGC 1 cut(s) 905
BsgI GTGCAG 1 cut(s) 273
Bsh1236I CGCG 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 907
BsiSI CCGG 1 cut(s) 664
BslI CCNNNNNNNGG 2 cut(s) 222, 896
BsmAI GTCTC 2 cut(s) 41, 804
BsmBI CGTCTC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 907
Bsp143I GATC 6 cut(s) 349, 580, 607, 670, 746, 795
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 1 cut(s) 764
BspCNI CTCAG 1 cut(s) 35
BspFNI CGCG 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 85, 672
BspMAI CTGCAG 1 cut(s) 895
BspOI GCTAGC 1 cut(s) 114
BspPI GGATC 4 cut(s) 615, 665, 678, 754
BspTI CTTAAG 2 cut(s) 485, 559
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 6 cut(s) 349, 580, 607, 670, 746, 795
BssNI GRCGYC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 559
BstACI GRCGYC 1 cut(s) 133
BstAFI CTTAAG 2 cut(s) 485, 559
BstAPI GCANNNNNTGC 1 cut(s) 902
BstBAI YACGTR 1 cut(s) 680
BstC8I GCNNGC 2 cut(s) 112, 898
BstDEI CTNAG 2 cut(s) 22, 589
BstDSI CCRYGG 1 cut(s) 149
BstENI CCTNNNNNAGG 1 cut(s) 894
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 481
BstKTI GATC 6 cut(s) 352, 583, 610, 673, 749, 798
BstMAI GTCTC 2 cut(s) 41, 804
BstMBI GATC 6 cut(s) 349, 580, 607, 670, 746, 795
BstMWI GCNNNNNNNGC 1 cut(s) 902
BstNSI RCATGY 2 cut(s) 296, 449
BstSFI CTRYAG 1 cut(s) 891
BstUI CGCG 1 cut(s) 481
BstV1I GCAGC 1 cut(s) 905
BstV2I GAAGAC 2 cut(s) 442, 469
BstX2I RGATCY 2 cut(s) 607, 670
BstYI RGATCY 2 cut(s) 607, 670
BtgI CCRYGG 1 cut(s) 149
BtgZI GCGATG 1 cut(s) 750
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 2 cut(s) 54, 907
BtsIMutI CAGTG 3 cut(s) 54, 361, 907
Cac8I GCNNGC 2 cut(s) 112, 898
CaiI CAGNNNCTG 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 225
CseI GACGC 1 cut(s) 470
Csp6I GTAC 1 cut(s) 843
CviAII CATG 5 cut(s) 150, 293, 370, 446, 821
CviQI GTAC 1 cut(s) 843
DdeI CTNAG 2 cut(s) 22, 589
DpnI GATC 6 cut(s) 351, 582, 609, 672, 748, 797
DpnII GATC 6 cut(s) 349, 580, 607, 670, 746, 795
DraI TTTAAA 1 cut(s) 882
Eam1104I CTCTTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 559
Eco130I CCWWGG 1 cut(s) 149
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 867
EcoNI CCTNNNNNAGG 1 cut(s) 894
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 5 cut(s) 153, 296, 373, 449, 824
FatI CATG 5 cut(s) 149, 292, 369, 445, 820
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 894
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 894
FspBI CTAG 3 cut(s) 111, 642, 732
GluI GCNGC 1 cut(s) 894
GsuI CTGGAG 1 cut(s) 144
HapII CCGG 1 cut(s) 664
HgaI GACGC 1 cut(s) 470
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 5 cut(s) 153, 296, 373, 449, 824
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 2 cut(s) 691, 812
HpaII CCGG 1 cut(s) 664
HphI GGTGA 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 324
Hpy188I TCNGA 2 cut(s) 217, 424
Hpy188III TCNNGA 3 cut(s) 353, 632, 809
Hpy8I GTNNAC 1 cut(s) 324
Hpy99I CGWCG 3 cut(s) 135, 138, 328
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 3 cut(s) 34, 133, 679
HpyCH4V TGCA 9 cut(s) 93, 183, 251, 290, 445, 788, 837, 874, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 902
HpyF3I CTNAG 2 cut(s) 22, 589
HpySE526I ACGT 3 cut(s) 34, 133, 679
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 5 cut(s) 153, 296, 373, 449, 824
Kzo9I GATC 6 cut(s) 349, 580, 607, 670, 746, 795
LmnI GCTCC 2 cut(s) 401, 468
LpnPI CCDG 9 cut(s) 108, 207, 208, 295, 338, 677, 774, 882, 903
Lsp1109I GCAGC 1 cut(s) 905
LweI GCATC 3 cut(s) 727, 763, 883
MaeI CTAG 3 cut(s) 111, 642, 732
MaeII ACGT 3 cut(s) 34, 133, 679
MaeIII GTNAC 3 cut(s) 365, 653, 675
MalI GATC 6 cut(s) 351, 582, 609, 672, 748, 797
MboI GATC 6 cut(s) 349, 580, 607, 670, 746, 795
MboII GAAGA 3 cut(s) 442, 474, 546
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 2 cut(s) 607, 670
MhlI GDGCHC 1 cut(s) 907
MluCI AATT 8 cut(s) 6, 156, 234, 269, 429, 621, 696, 782
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 2 cut(s) 648, 724
MnlI CCTC 7 cut(s) 31, 553, 556, 559, 562, 589, 897
MseI TTAA 5 cut(s) 17, 159, 486, 560, 881
MslI CAYNNNNRTG 1 cut(s) 202
MspCI CTTAAG 2 cut(s) 485, 559
MspI CCGG 1 cut(s) 664
MunI CAATTG 1 cut(s) 6
MvnI CGCG 1 cut(s) 481
MwoI GCNNNNNNNGC 1 cut(s) 902
NcoI CCATGG 1 cut(s) 149
NdeII GATC 6 cut(s) 349, 580, 607, 670, 746, 795
NheI GCTAGC 1 cut(s) 110
NlaIII CATG 5 cut(s) 153, 296, 373, 449, 824
NlaIV GGNNCC 2 cut(s) 85, 672
NmuCI GTSAC 3 cut(s) 365, 653, 675
NspI RCATGY 2 cut(s) 296, 449
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 1 cut(s) 691
PkrI GCNGC 1 cut(s) 895
PleI GAGTC 1 cut(s) 806
PpsI GAGTC 1 cut(s) 806
Ppu21I YACGTR 1 cut(s) 680
PspN4I GGNNCC 2 cut(s) 85, 672
PspPI GGNCC 1 cut(s) 225
PstI CTGCAG 1 cut(s) 895
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 2 cut(s) 607, 670
RsaI GTAC 1 cut(s) 844
RsaNI GTAC 1 cut(s) 843
RseI CAYNNNNRTG 1 cut(s) 202
SalI GTCGAC 1 cut(s) 322
SaqAI TTAA 5 cut(s) 17, 159, 486, 560, 881
SatI GCNGC 1 cut(s) 894
Sau3AI GATC 6 cut(s) 349, 580, 607, 670, 746, 795
Sau96I GGNCC 1 cut(s) 225
ScaI AGTACT 1 cut(s) 844
SchI GAGTC 1 cut(s) 806
SduI GDGCHC 1 cut(s) 907
SfaNI GCATC 3 cut(s) 727, 763, 883
SfcI CTRYAG 1 cut(s) 891
SinI GGWCC 1 cut(s) 225
SmiI ATTTAAAT 1 cut(s) 882
SmiMI CAYNNNNRTG 1 cut(s) 202
SmlI CTYRAG 2 cut(s) 485, 559
SmoI CTYRAG 2 cut(s) 485, 559
Sse9I AATT 8 cut(s) 6, 156, 234, 269, 429, 621, 696, 782
SsiI CCGC 1 cut(s) 764
SspMI CTAG 3 cut(s) 111, 642, 732
StyI CCWWGG 1 cut(s) 149
SwaI ATTTAAAT 1 cut(s) 882
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 3 cut(s) 37, 136, 682
TaqI TCGA 6 cut(s) 130, 323, 434, 694, 715, 808
TasI AATT 8 cut(s) 6, 156, 234, 269, 429, 621, 696, 782
TatI WGTACW 1 cut(s) 842
TfiI GAWTC 1 cut(s) 691
Tru1I TTAA 5 cut(s) 17, 159, 486, 560, 881
Tru9I TTAA 5 cut(s) 17, 159, 486, 560, 881
TscAI CASTG 3 cut(s) 61, 368, 907
TseFI GTSAC 3 cut(s) 365, 653, 675
TseI GCWGC 1 cut(s) 893
Tsp45I GTSAC 3 cut(s) 365, 653, 675
TspGWI ACGGA 6 cut(s) 76, 341, 414, 441, 481, 663
TspRI CASTG 3 cut(s) 61, 368, 907
Vha464I CTTAAG 2 cut(s) 485, 559
VpaK11BI GGWCC 1 cut(s) 225
XagI CCTNNNNNAGG 1 cut(s) 894
XapI RAATTY 3 cut(s) 234, 429, 782
XceI RCATGY 2 cut(s) 296, 449
XmiI GTMKAC 1 cut(s) 323
XspI CTAG 3 cut(s) 111, 642, 732
ZraI GACGTC 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.