Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000006.1

Orthogroup ID

OG0000673

Physical Location & Seq

Genomic Coordinates Reverse (-)

20837 .. 22039

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000006.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atgtcaaacactaatgatcgttcgtggtccgatatgccaattgaaatcttaacctcagttgctgaacgtctctcacctacaccaatcactgctgatatcaatctttttcactttggttccgtcagcaaaacttggagacaatctagctttcgtgcaggagttcgacgtcgttcaagtatgccatggctaattaacggcgaatacgagttgttttgcaatggaaacttaccagcattgaagtgtcagttctccgatttctggtgcaaacaaattttatactcctatgcagaagtcttaccgaaaaaattggagagagaccccactgcacatgcttcaaaaaatggctggttgcttttgtcgacggatgagtgtattaatcctattttggcaagtacctcattctttttttttaatccttttcgtgagaagatggcgatcatcgagttacctgaaaatttgaattttacagtcaatcaggaaatagtagcatcaacgttcacaacaaatccaacttgtcccagtgattgtcatatctttgtagcgtgtggtagatcatctaacccacgaaaaatttgcagcatatatacttgtaatctgcaagatggcaaatggaaagatcaggatatacactgtgacatggaactatttgatgtggcatatatggacggagctttctattgcgttttttcagacgggatttcgatcgtattgcatgtcttcacatttagaagacggagctttctgtcgcgtcttaagaaagccattggacaagctgatgatgttaaacaaagtgagccattcgttatctcctcctcctcctcttccttaagaaagaaggagaatgatgatctctacttagttgaggctgatggggatctcttattagcaatttgttctcttgatgacactagcagttattgtcacatattccggttggatccgtcacgtaaaaaatggaatcgaattagaaacttgcgaaatcgagtaatgattttgtctagcgatggtgttggatcggttgtagttcctgcggtgcgagatgctaaagaatttgcaaacacgatctttgtttatcgagactcaaagcatgagcattatatctgcaaaagtactgaagccacttggatatttgacaaagtgcatcatttaaatcctcctgaagcaggcagtgctctcattgaaccccctgacttatggcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

400

Amino Acids

45.67

Weight (kDa)

6.42

Isoelectric Point (pI)

57.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26661 FvH4_2g26662 FvH4_3g21700 FvH4_3g21711 FvH4_3g21801 FvH4_4g17781 FvH4_4g20671 FvH4_5g08112 FvH4_5g19010
pyrus_communis	pycom11g20050 pycom12g20870
rosa_chinensis	RchiOBHm_Chr3g0473991 RchiOBHm_Chr6g0295501
rosa_laevigata	RLG00000011844 RLG00000011846 RLG00000011847 RLG00000023960 RLG00000025447 RLG00000025455 RLG00000027507 RLG00000029040 RLG00000033754 RLG00000033763 RLG00000033780 RLG00000033784
rosa_multiflora	Rmu_co8461177.1_g000001 Rmu_sc0000006.1_g000007 Rmu_sc0000475.1_g000005 Rmu_sc0001331.1_g000009 Rmu_sc0001576.1_g000022 Rmu_sc0002271.1_g000033 Rmu_sc0002414.1_g000009 Rmu_sc0002521.1_g000001 Rmu_sc0003170.1_g000006 Rmu_sc0003854.1_g000002 Rmu_sc0004190.1_g000002 Rmu_sc0005137.1_g000016 Rmu_sc0006633.1_g000002 Rmu_sc0012290.1_g000003 Rmu_sc0022254.1_g000001 Rmu_sc0027615.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043510 Rroxscaffold_1G00043580 Rroxscaffold_1G00043780 Rroxscaffold_3G00266190 Rroxscaffold_4G00311360 Rroxscaffold_5G00368090 Rroxscaffold_6G00407580 Rroxscaffold_6G00425070 Rroxscaffold_6G00425130 Rroxscaffold_7G00173050
rosa_rugosa	Rorug02G0654500 Rorug04G0209000
rosa_samantha	Rh1AG322000 Rh1BG144900 Rh2CG355900 Rh3BG060900 Rh3BG216400 Rh3DG212200 Rh4CG284500 Rh5AG254200 Rh5BG255100 Rh5BG256200 Rh5CG287800 Rh5CG289200 Rh5CG289300 Rh6AG364700 Rh6BG366800 Rh6DG360500 Rh7AG097700 Rh7BG098700 Rh7CG099600
rosa_wichuraiana	Rw3G004540 Rw5G023530 Rw6G031400 Rw6G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	359
AccII	CGCG	1 cut(s)	748
AciI	CCGC	1 cut(s)	1031
AclI	AACGTT	1 cut(s)	494
AclWI	GGATC	4 cut(s)	882, 932, 945, 1021
AcsI	RAATTY	5 cut(s)	270, 454, 460, 570, 1049
AcuI	CTGAAG	2 cut(s)	1134, 1179
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	2 cut(s)	394, 1111
AfiI	CCNNNNNNNGG	2 cut(s)	258, 1163
AflII	CTTAAG	2 cut(s)	752, 826
AgsI	TTSAA	6 cut(s)	44, 174, 238, 336, 460, 1181
AluBI	AGCT	4 cut(s)	147, 671, 738, 773
AluI	AGCT	4 cut(s)	147, 671, 738, 773
Alw21I	GWGCWC	1 cut(s)	1174
Alw26I	GTCTC	4 cut(s)	74, 130, 309, 1071
AlwI	GGATC	4 cut(s)	882, 932, 945, 1021
AlwNI	CAGNNNCTG	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	576
ApoI	RAATTY	5 cut(s)	270, 454, 460, 570, 1049
AseI	ATTAAT	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	937
BbsI	GAAGAC	2 cut(s)	709, 736
Bbv12I	GWGCWC	1 cut(s)	1174
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	4 cut(s)	424, 596, 863, 998
BceAI	ACGGC	1 cut(s)	211
BcgI	CGANNNNNNTGC	4 cut(s)	555, 589, 691, 725
BcoDI	GTCTC	4 cut(s)	74, 130, 309, 1071
BfaI	CTAG	3 cut(s)	144, 909, 999
BfrI	CTTAAG	2 cut(s)	752, 826
BisI	GCNGC	1 cut(s)	577
BlsI	GCNGC	1 cut(s)	578
BmcAI	AGTACT	1 cut(s)	1111
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	118, 939
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	3 cut(s)	497, 1030, 1150
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	2 cut(s)	709, 736
BsaAI	YACGTR	1 cut(s)	947
BsaBI	GATNNNNATC	4 cut(s)	99, 434, 701, 873
BsaHI	GRCGYC	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	930
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 1163
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	223
Bse8I	GATNNNNATC	4 cut(s)	99, 434, 701, 873
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	4 cut(s)	99, 434, 701, 873
BseLI	CCNNNNNNNGG	2 cut(s)	258, 1163
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	4 cut(s)	799, 802, 805, 808
BseXI	GCAGC	1 cut(s)	588
BsgI	GTGCAG	2 cut(s)	174, 309
Bsh1236I	CGCG	1 cut(s)	748
Bsh1285I	CGRYCG	1 cut(s)	705
BsiEI	CGRYCG	1 cut(s)	705
BsiHKAI	GWGCWC	1 cut(s)	1174
BsiSI	CCGG	1 cut(s)	931
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	2 cut(s)	258, 1163
BsmAI	GTCTC	4 cut(s)	74, 130, 309, 1071
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	501
Bso31I	GGTCTC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	1174
Bsp19I	CCATGG	1 cut(s)	182
BspACI	CCGC	1 cut(s)	1031
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	748
BspLI	GGNNCC	2 cut(s)	118, 939
BspPI	GGATC	4 cut(s)	882, 932, 945, 1021
BspTI	CTTAAG	2 cut(s)	752, 826
BspTNI	GGTCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	1 cut(s)	182
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	469, 632
Bst6I	CTCTTC	1 cut(s)	826
BstACI	GRCGYC	1 cut(s)	166
BstAFI	CTTAAG	2 cut(s)	752, 826
BstAPI	GCANNNNNTGC	1 cut(s)	1169
BstBAI	YACGTR	1 cut(s)	947
BstC8I	GCNNGC	1 cut(s)	1165
BstDEI	CTNAG	2 cut(s)	55, 856
BstDSI	CCRYGG	1 cut(s)	182
BstENI	CCTNNNNNAGG	1 cut(s)	1161
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	748
BstMAI	GTCTC	4 cut(s)	74, 130, 309, 1071
BstMCI	CGRYCG	1 cut(s)	705
BstMWI	GCNNNNNNNGC	1 cut(s)	1169
BstNSI	RCATGY	2 cut(s)	332, 716
BstUI	CGCG	1 cut(s)	748
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	2 cut(s)	709, 736
BstX2I	RGATCY	2 cut(s)	874, 937
BstYI	RGATCY	2 cut(s)	874, 937
BtgI	CCRYGG	1 cut(s)	182
BtgZI	GCGATG	1 cut(s)	1017
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	3 cut(s)	87, 321, 1174
BtsIMutI	CAGTG	5 cut(s)	87, 321, 526, 628, 1174
Cac8I	GCNNGC	1 cut(s)	1165
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	27
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	2 cut(s)	393, 1110
CviAII	CATG	5 cut(s)	183, 329, 637, 713, 1088
CviQI	GTAC	2 cut(s)	393, 1110
DdeI	CTNAG	2 cut(s)	55, 856
DraI	TTTAAA	1 cut(s)	1149
Eam1104I	CTCTTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	826
Eco130I	CCWWGG	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	1134, 1179
EcoNI	CCTNNNNNAGG	1 cut(s)	1161
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	5 cut(s)	186, 332, 640, 716, 1091
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	5 cut(s)	182, 328, 636, 712, 1087
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	1 cut(s)	577
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	577
FspBI	CTAG	3 cut(s)	144, 909, 999
GluI	GCNGC	1 cut(s)	577
HapII	CCGG	1 cut(s)	931
HgaI	GACGC	1 cut(s)	737
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	5 cut(s)	186, 332, 640, 716, 1091
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	2 cut(s)	958, 1079
HpaII	CCGG	1 cut(s)	931
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	360, 498
Hpy188I	TCNGA	3 cut(s)	31, 253, 691
Hpy188III	TCNNGA	6 cut(s)	422, 476, 620, 899, 1076, 1157
Hpy8I	GTNNAC	2 cut(s)	360, 498
Hpy99I	CGWCG	3 cut(s)	168, 171, 364
HpyAV	CCTTC	1 cut(s)	829
HpyCH4III	ACNGT	2 cut(s)	469, 632
HpyCH4IV	ACGT	4 cut(s)	67, 166, 494, 946
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1169
HpyF3I	CTNAG	2 cut(s)	55, 856
HpySE526I	ACGT	4 cut(s)	67, 166, 494, 946
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	5 cut(s)	186, 332, 640, 716, 1091
LmnI	GCTCC	2 cut(s)	668, 735
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	3 cut(s)	497, 1030, 1150
MaeI	CTAG	3 cut(s)	144, 909, 999
MaeII	ACGT	4 cut(s)	67, 166, 494, 946
MaeIII	GTNAC	4 cut(s)	444, 632, 920, 942
MboII	GAAGA	4 cut(s)	439, 709, 741, 813
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	2 cut(s)	874, 937
MhlI	GDGCHC	1 cut(s)	1174
MlyI	GAGTC	1 cut(s)	1073
MmeI	TCCRAC	3 cut(s)	533, 915, 991
MnlI	CCTC	8 cut(s)	64, 406, 820, 823, 826, 829, 856, 1164
MseI	TTAA	8 cut(s)	50, 192, 375, 411, 753, 783, 827, 1148
MslI	CAYNNNNRTG	1 cut(s)	238
MspCI	CTTAAG	2 cut(s)	752, 826
MspI	CCGG	1 cut(s)	931
MunI	CAATTG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	748
MwoI	GCNNNNNNNGC	1 cut(s)	1169
NcoI	CCATGG	1 cut(s)	182
NlaIII	CATG	5 cut(s)	186, 332, 640, 716, 1091
NlaIV	GGNNCC	2 cut(s)	118, 939
NmuCI	GTSAC	3 cut(s)	632, 920, 942
NspI	RCATGY	2 cut(s)	332, 716
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	958
PkrI	GCNGC	1 cut(s)	578
Ple19I	CGATCG	1 cut(s)	705
PleI	GAGTC	1 cut(s)	1073
PpsI	GAGTC	1 cut(s)	1073
Ppu21I	YACGTR	1 cut(s)	947
PshBI	ATTAAT	1 cut(s)	375
Psp1406I	AACGTT	1 cut(s)	494
PspN4I	GGNNCC	2 cut(s)	118, 939
PspPI	GGNCC	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	2 cut(s)	874, 937
PvuI	CGATCG	1 cut(s)	705
RsaI	GTAC	2 cut(s)	394, 1111
RsaNI	GTAC	2 cut(s)	393, 1110
RseI	CAYNNNNRTG	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	358
SaqAI	TTAA	8 cut(s)	50, 192, 375, 411, 753, 783, 827, 1148
SatI	GCNGC	1 cut(s)	577
Sau96I	GGNCC	1 cut(s)	27
ScaI	AGTACT	1 cut(s)	1111
SchI	GAGTC	1 cut(s)	1073
SduI	GDGCHC	1 cut(s)	1174
SfaNI	GCATC	3 cut(s)	497, 1030, 1150
SinI	GGWCC	1 cut(s)	27
SmiI	ATTTAAAT	1 cut(s)	1149
SmiMI	CAYNNNNRTG	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	752, 826
SmoI	CTYRAG	2 cut(s)	752, 826
SsiI	CCGC	1 cut(s)	1031
SspMI	CTAG	3 cut(s)	144, 909, 999
StyI	CCWWGG	1 cut(s)	182
SwaI	ATTTAAAT	1 cut(s)	1149
TaaI	ACNGT	2 cut(s)	469, 632
TaiI	ACGT	4 cut(s)	70, 169, 497, 949
TaqI	TCGA	7 cut(s)	163, 359, 441, 701, 961, 982, 1075
TatI	WGTACW	1 cut(s)	1109
TfiI	GAWTC	1 cut(s)	958
Tru1I	TTAA	8 cut(s)	50, 192, 375, 411, 753, 783, 827, 1148
Tru9I	TTAA	8 cut(s)	50, 192, 375, 411, 753, 783, 827, 1148
TscAI	CASTG	5 cut(s)	94, 328, 526, 635, 1174
TseFI	GTSAC	3 cut(s)	632, 920, 942
TseI	GCWGC	1 cut(s)	576
Tsp45I	GTSAC	3 cut(s)	632, 920, 942
TspGWI	ACGGA	5 cut(s)	109, 377, 681, 748, 930
TspRI	CASTG	5 cut(s)	94, 328, 526, 635, 1174
Vha464I	CTTAAG	2 cut(s)	752, 826
VpaK11BI	GGWCC	1 cut(s)	27
VspI	ATTAAT	1 cut(s)	375
XagI	CCTNNNNNAGG	1 cut(s)	1161
XapI	RAATTY	5 cut(s)	270, 454, 460, 570, 1049
XceI	RCATGY	2 cut(s)	332, 716
XmiI	GTMKAC	1 cut(s)	359
XspI	CTAG	3 cut(s)	144, 909, 999
ZraI	GACGTC	1 cut(s)	167
ZrmI	AGTACT	1 cut(s)	1111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.