FvH4_3g21801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000673
Physical Location & Seq
Forward (+)
14856848 .. 14857555
708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21801.t1

Sequence Viewer

Length: 507 bp
ATGAGGTTTCAAGGCGGACGTGTGCGGGAGTGGGATGAGTTCGTTATAACAACCACATACTACCGAATGGATTCAAACCAAGAGCATATTAGCTGGAGTGTAACTGAACTTCCTCTTAGCAATCCCAAAAATAAGGAATGGAAGTTCATCAAGGACGTAGCTTACGTGGATGGAATTTTCTATTGTGCTGTGGATATGGACTCGAAAGTTATATTGGGAACCTTCAATGGCTCCTACTGGGCAGTTCGTTACAAAGGAGCAATTGTTGATGATGATGAAAATTTCTACCACATTTACCAGTTTGATTTGACACGAGAAGAATGGACAAGAGTAAAAAGTTTGGGAAACCGAGTATTGATGTTGCGAAGCTGTTCGTCAGTTGTGACTCCGGCGGTGGGGGTGATCAGTAGATTAGCAAACATGATATTTGTTTGTGGCTCGTATTCGGATAGCTATGTTGCTTTTACTTGGGAAATTGAAGGTGGCGGCAAGCCGGCAACTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.34

Weight (kDa)

5.41

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 80 - 145 1.7e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AciI CCGC 4 cut(s) 15, 25, 392, 486
AcsI RAATTY 2 cut(s) 174, 280
AfiI CCNNNNNNNGG 1 cut(s) 395
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 4 cut(s) 11, 75, 226, 479
AjiI CACGTC 1 cut(s) 20
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 5 cut(s) 93, 161, 369, 453, 504
AluI AGCT 5 cut(s) 93, 161, 369, 453, 504
ApoI RAATTY 2 cut(s) 174, 280
Asp700I GAANNNNTTC 2 cut(s) 70, 370
AsuHPI GGTGA 1 cut(s) 412
BarI GAAGNNNNNNTAC 2 cut(s) 93, 125
BauI CACGAG 1 cut(s) 312
BccI CCATC 1 cut(s) 164
BclI TGATCA 1 cut(s) 402
BfaI CTAG 2 cut(s) 501, 505
BisI GCNGC 1 cut(s) 487
BlsI GCNGC 1 cut(s) 488
BmgBI CACGTC 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 220, 232
BmrI ACTGGG 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 115
BsaAI YACGTR 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse118I RCCGGY 1 cut(s) 493
Bse1I ACTGG 2 cut(s) 242, 298
BseGI GGATG 2 cut(s) 40, 175
BseLI CCNNNNNNNGG 1 cut(s) 395
BseNI ACTGG 2 cut(s) 242, 298
BsiSI CCGG 2 cut(s) 389, 494
BslI CCNNNNNNNGG 1 cut(s) 395
Bsp143I GATC 1 cut(s) 402
BspACI CCGC 4 cut(s) 15, 25, 392, 486
BspLI GGNNCC 2 cut(s) 220, 232
BsrFI RCCGGY 1 cut(s) 493
BsrI ACTGG 2 cut(s) 242, 298
BssAI RCCGGY 1 cut(s) 493
BssMI GATC 1 cut(s) 402
BssSI CACGAG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 312
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 491, 495
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 2 cut(s) 40, 175
BstKTI GATC 1 cut(s) 405
BstMBI GATC 1 cut(s) 402
BtrI CACGTC 1 cut(s) 20
BtsCI GGATG 2 cut(s) 40, 175
Cac8I GCNNGC 2 cut(s) 491, 495
Cfr10I RCCGGY 1 cut(s) 493
CviAII CATG 1 cut(s) 421
CviJI RGCY 8 cut(s) 93, 161, 231, 369, 438, 453, 493, 504
CviKI_1 RGCY 8 cut(s) 93, 161, 231, 369, 438, 453, 493, 504
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
EciI GGCGGA 1 cut(s) 30
FaeI CATG 1 cut(s) 424
FaiI YATR 7 cut(s) 47, 58, 87, 197, 212, 422, 456
FatI CATG 1 cut(s) 420
FauI CCCGC 1 cut(s) 18
FbaI TGATCA 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 487
FokI GGATG 2 cut(s) 47, 182
Fsp4HI GCNGC 1 cut(s) 487
FspBI CTAG 2 cut(s) 501, 505
GluI GCNGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 115
HapII CCGG 2 cut(s) 389, 494
Hin1II CATG 1 cut(s) 424
HinfI GANTC 3 cut(s) 71, 200, 385
HpaII CCGG 2 cut(s) 389, 494
HphI GGTGA 1 cut(s) 412
Hpy188I TCNGA 1 cut(s) 448
HpyAV CCTTC 2 cut(s) 232, 473
HpyCH4IV ACGT 3 cut(s) 19, 156, 165
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 3 cut(s) 19, 156, 165
Hsp92II CATG 1 cut(s) 424
KroI GCCGGC 1 cut(s) 493
KroNI GCCGGC 1 cut(s) 495
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 1 cut(s) 402
LmnI GCTCC 2 cut(s) 236, 257
LpnPI CCDG 4 cut(s) 79, 223, 311, 402
MaeI CTAG 2 cut(s) 501, 505
MaeII ACGT 3 cut(s) 19, 156, 165
MaeIII GTNAC 3 cut(s) 100, 248, 382
MalI GATC 1 cut(s) 404
MboI GATC 1 cut(s) 402
MboII GAAGA 1 cut(s) 329
MfeI CAATTG 1 cut(s) 261
MluCI AATT 4 cut(s) 174, 261, 280, 474
MlyI GAGTC 2 cut(s) 194, 379
MnlI CCTC 1 cut(s) 123
MroNI GCCGGC 1 cut(s) 493
MroXI GAANNNNTTC 2 cut(s) 70, 370
MspI CCGG 2 cut(s) 389, 494
MunI CAATTG 1 cut(s) 261
NaeI GCCGGC 1 cut(s) 495
NdeII GATC 1 cut(s) 402
NgoMIV GCCGGC 1 cut(s) 493
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 2 cut(s) 220, 232
NmuCI GTSAC 1 cut(s) 382
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdiI GCCGGC 1 cut(s) 495
PdmI GAANNNNTTC 2 cut(s) 70, 370
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 488
PleI GAGTC 2 cut(s) 194, 379
PpsI GAGTC 2 cut(s) 194, 379
Ppu21I YACGTR 1 cut(s) 166
PsiI TTATAA 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 220, 232
SatI GCNGC 1 cut(s) 487
Sau3AI GATC 1 cut(s) 402
SchI GAGTC 2 cut(s) 194, 379
Sse9I AATT 4 cut(s) 174, 261, 280, 474
SsiI CCGC 4 cut(s) 15, 25, 392, 486
SspMI CTAG 2 cut(s) 501, 505
TaiI ACGT 3 cut(s) 22, 159, 168
TaqI TCGA 1 cut(s) 203
TasI AATT 4 cut(s) 174, 261, 280, 474
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 1 cut(s) 71
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 2 cut(s) 136, 291
XapI RAATTY 2 cut(s) 174, 280
XmnI GAANNNNTTC 2 cut(s) 70, 370
XspI CTAG 2 cut(s) 501, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.