Rw5G023530

F-box kelch-repeat protein At1g57790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000673
Physical Location & Seq
Forward (+)
33204636 .. 33205871
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G023530.1

Sequence Viewer

Length: 1236 bp
ATGAAGAAAAATTCTAGCAGAAAGAAAAACTCGTGTGATCAAACTCAAGCAGATCGTACCCCTCCAATCCGTTCAAACCATCGTTGTTGGTCTGATCTTCCAGTTGACCTATCAAGATCAGTGGCTGAACGTCTCATATATCCTGATTTTCTTCGCTTTCGTGCAGTATGCAAAAACTGGCAGCGAGCTTTTTCCGACGACGATGACCTTCAGCGACGTGCAGTATTTCCTTTGATACGGGTTGACAGTTCTCATTACTTCCACTATACCAAAACCCAAACAGTTTGTACAGCGCGCTTCTTTGATTTGCTGTCCCCATTACAAGTCTTCCCTATCAGAAACGTGGTAAAAGAACAAGTGCAAAAAGAGGACCTCGTTTATCCAAGCTTTTGTTGTTCGTACTCCGATTGGTTGCTGTTGTTAAAATCAGATCCCTCAGATTACTATAAAGAGATAAATTCCAGATTCTTTGTTCATAATCCTTTTCGCAGCGAGACTGTGGAATTGCATCTGCCTCCATCAGTTTCGCGGCACTACCTTTCCAGAGAGGTAGAGGTAGCAGGCTTCTCGACCTCTCCAACTTCTCTGGATTGTGTTATCTTTCTCCTGTGGAAAATTCATAAATGCAATGGTTATGATTCTGATCCTAATTACGAGGAGTGGAATGAGTTCTTTATTACCACGTACAACAGAAAACATCGAAACCAAAAGTGTAGAAGTTGGAGTGTGCATGAACTTCCTCATCGCAATCCCAAAAATAAGGAGTGGAAGTTCATCAAGGACGTGGCTTACATGGATGGAAGTTTCTATTGTGCTGTGGATATGAATTCAAAGGTTGTATTGGGTACCTTCAATGTAGCACTTCAAGAGTGGGTTATGATGATGAAGAGATCCTTGAGACTACCATCTCGTCCAGAACTCATGAACTTGGTTAAATCTAATGAAGGGCTACTATTGACAGTTTGTTATAAGGAGCAAGATGGTGATGAATTTTTCTTCCATATTTACCAGTTTGATTTGTCACGAAAAGAATGGACAAGAGTTAAAAGTTTGGGAAACCAAGTATTGATGTTGCATAGCCGTCCGTCAGTTGCGACTCCGGCGGTGGGGATGATCAGTAAATTAGCAAACATGATATTTGTCCGTGGCTTGAACTCTGACAGCTATGTTGCTTTTACTTGGGAAGTTGAAGGCGAATGGAGACGGCAGCAATTAGATAGCATTATATCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

411

Amino Acids

48.51

Weight (kDa)

8.83

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 30 - 68 1.7e-06 F-box domain
Beta-prop_KIB1-4 PF03478 118 - 380 1.7e-19 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 969
Acc65I GGTACC 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 845
AccII CGCG 2 cut(s) 295, 529
AciI CCGC 2 cut(s) 529, 1103
AclWI GGATC 3 cut(s) 425, 638, 885
AcsI RAATTY 5 cut(s) 10, 457, 615, 826, 989
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 5 cut(s) 58, 289, 401, 686, 847
AfiI CCNNNNNNNGG 1 cut(s) 1106
AgsI TTSAA 6 cut(s) 75, 831, 853, 866, 1153, 1190
AjiI CACGTC 2 cut(s) 218, 784
AloI GAACNNNNNNTCC 2 cut(s) 755, 787
AluBI AGCT 3 cut(s) 188, 387, 1164
AluI AGCT 3 cut(s) 188, 387, 1164
Alw26I GTCTC 4 cut(s) 137, 488, 892, 1195
AlwI GGATC 3 cut(s) 425, 638, 885
AlwNI CAGNNNCTG 1 cut(s) 125
ApeKI GCWGC 3 cut(s) 181, 489, 1207
ApoI RAATTY 5 cut(s) 10, 457, 615, 826, 989
Asp700I GAANNNNTTC 1 cut(s) 668
Asp718I GGTACC 1 cut(s) 845
AspLEI GCGC 2 cut(s) 295, 297
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 995
AvaII GGWCC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 845
BauI CACGAG 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 319
BbvI GCAGC 3 cut(s) 193, 501, 1219
BccI CCATC 5 cut(s) 87, 526, 791, 913, 974
BceAI ACGGC 2 cut(s) 1065, 1220
BcgI CGANNNNNNTGC 2 cut(s) 549, 583
BclI TGATCA 2 cut(s) 37, 1113
BcoDI GTCTC 4 cut(s) 137, 488, 892, 1195
BfaI CTAG 1 cut(s) 15
BisI GCNGC 4 cut(s) 182, 490, 530, 1208
BlsI GCNGC 4 cut(s) 183, 491, 531, 1209
Bme18I GGWCC 1 cut(s) 370
BmgBI CACGTC 2 cut(s) 218, 784
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 847
BmsI GCATC 1 cut(s) 517
BpiI GAAGAC 1 cut(s) 319
BpuEI CTTGAG 2 cut(s) 30, 916
BsaAI YACGTR 1 cut(s) 684
BsaBI GATNNNNATC 1 cut(s) 642
BsaJI CCNNGG 1 cut(s) 1144
BsaXI ACNNNNNCTCC 2 cut(s) 755, 785
Bsc4I CCNNNNNNNGG 1 cut(s) 1106
Bse1I ACTGG 3 cut(s) 101, 182, 1009
Bse3DI GCAATG 1 cut(s) 634
Bse8I GATNNNNATC 1 cut(s) 642
BseDI CCNNGG 1 cut(s) 1144
BseGI GGATG 2 cut(s) 802, 1116
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 1 cut(s) 1106
BseMI GCAATG 1 cut(s) 634
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 3 cut(s) 101, 182, 1009
BsePI GCGCGC 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 671
BseXI GCAGC 3 cut(s) 193, 501, 1219
BsgI GTGCAG 2 cut(s) 183, 240
Bsh1236I CGCG 2 cut(s) 295, 529
BshNI GGYRCC 1 cut(s) 845
BsiSI CCGG 1 cut(s) 1100
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 1106
BsmAI GTCTC 4 cut(s) 137, 488, 892, 1195
BsmBI CGTCTC 2 cut(s) 137, 1195
BsmFI GGGAC 1 cut(s) 298
Bsp1407I TGTACA 1 cut(s) 287
Bsp143I GATC 8 cut(s) 37, 52, 94, 116, 430, 643, 890, 1113
BspACI CCGC 2 cut(s) 529, 1103
BspCNI CTCAG 1 cut(s) 449
BspFNI CGCG 2 cut(s) 295, 529
BspHI TCATGA 1 cut(s) 921
BspLI GGNNCC 1 cut(s) 847
BspPI GGATC 3 cut(s) 425, 638, 885
BspT107I GGYRCC 1 cut(s) 845
BsrDI GCAATG 1 cut(s) 634
BsrGI TGTACA 1 cut(s) 287
BsrI ACTGG 3 cut(s) 101, 182, 1009
BssECI CCNNGG 1 cut(s) 1144
BssHII GCGCGC 1 cut(s) 293
BssMI GATC 8 cut(s) 37, 52, 94, 116, 430, 643, 890, 1113
BssSI CACGAG 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 31
Bst4CI ACNGT 4 cut(s) 248, 283, 499, 961
Bst6I CTCTTC 1 cut(s) 881
BstAUI TGTACA 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 684
BstC8I GCNNGC 3 cut(s) 186, 295, 562
BstDEI CTNAG 2 cut(s) 436, 1230
BstDSI CCRYGG 1 cut(s) 1144
BstF5I GGATG 2 cut(s) 802, 1116
BstFNI CGCG 2 cut(s) 295, 529
BstHHI GCGC 2 cut(s) 295, 297
BstKTI GATC 8 cut(s) 40, 55, 97, 119, 433, 646, 893, 1116
BstMAI GTCTC 4 cut(s) 137, 488, 892, 1195
BstMBI GATC 8 cut(s) 37, 52, 94, 116, 430, 643, 890, 1113
BstMWI GCNNNNNNNGC 1 cut(s) 1100
BstUI CGCG 2 cut(s) 295, 529
BstV1I GCAGC 3 cut(s) 193, 501, 1219
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 2 cut(s) 430, 890
BstYI RGATCY 2 cut(s) 430, 890
BtgI CCRYGG 1 cut(s) 1144
BtgZI GCGATG 1 cut(s) 728
BtrI CACGTC 2 cut(s) 218, 784
BtsCI GGATG 2 cut(s) 802, 1116
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 3 cut(s) 186, 295, 562
CaiI CAGNNNCTG 1 cut(s) 125
CciI TCATGA 1 cut(s) 921
CfoI GCGC 2 cut(s) 295, 297
Cfr13I GGNCC 1 cut(s) 370
Csp6I GTAC 5 cut(s) 57, 288, 400, 685, 846
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 4 cut(s) 731, 793, 922, 1132
CviJI RGCY 9 cut(s) 125, 188, 387, 564, 788, 949, 1080, 1149, 1164
CviKI_1 RGCY 9 cut(s) 125, 188, 387, 564, 788, 949, 1080, 1149, 1164
CviQI GTAC 5 cut(s) 57, 288, 400, 685, 846
DdeI CTNAG 2 cut(s) 436, 1230
DpnI GATC 8 cut(s) 39, 54, 96, 118, 432, 645, 892, 1115
DpnII GATC 8 cut(s) 37, 52, 94, 116, 430, 643, 890, 1113
Eam1104I CTCTTC 1 cut(s) 881
EarI CTCTTC 1 cut(s) 881
Eco47I GGWCC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 826
Esp3I CGTCTC 2 cut(s) 137, 1195
FaeI CATG 4 cut(s) 734, 796, 925, 1135
FalI AAGNNNNNCTT 2 cut(s) 878, 910
FaqI GGGAC 1 cut(s) 298
FatI CATG 4 cut(s) 730, 792, 921, 1131
FbaI TGATCA 2 cut(s) 37, 1113
Fnu4HI GCNGC 4 cut(s) 182, 490, 530, 1208
FokI GGATG 2 cut(s) 809, 1123
Fsp4HI GCNGC 4 cut(s) 182, 490, 530, 1208
FspBI CTAG 1 cut(s) 15
GlaI GCGC 2 cut(s) 294, 296
GluI GCNGC 4 cut(s) 182, 490, 530, 1208
HapII CCGG 1 cut(s) 1100
HhaI GCGC 2 cut(s) 295, 297
Hin1II CATG 4 cut(s) 734, 796, 925, 1135
Hin6I GCGC 2 cut(s) 293, 295
HinP1I GCGC 2 cut(s) 293, 295
HincII GTYRAC 2 cut(s) 106, 244
HindII GTYRAC 2 cut(s) 106, 244
HindIII AAGCTT 1 cut(s) 385
HinfI GANTC 3 cut(s) 465, 638, 1096
HpaII CCGG 1 cut(s) 1100
HphI GGTGA 1 cut(s) 995
Hpy166II GTNNAC 2 cut(s) 106, 244
Hpy188I TCNGA 8 cut(s) 94, 196, 338, 406, 430, 439, 643, 1159
Hpy8I GTNNAC 2 cut(s) 106, 244
Hpy99I CGWCG 3 cut(s) 200, 203, 219
HpyAV CCTTC 4 cut(s) 218, 859, 938, 1184
HpyCH4III ACNGT 4 cut(s) 248, 283, 499, 961
HpyCH4IV ACGT 5 cut(s) 130, 217, 342, 683, 783
HpyCH4V TGCA 8 cut(s) 164, 171, 221, 361, 508, 627, 730, 1075
HpyF10VI GCNNNNNNNGC 1 cut(s) 1100
HpyF3I CTNAG 2 cut(s) 436, 1230
HpySE526I ACGT 5 cut(s) 130, 217, 342, 683, 783
Hsp92II CATG 4 cut(s) 734, 796, 925, 1135
HspAI GCGC 2 cut(s) 293, 295
KpnI GGTACC 1 cut(s) 849
Ksp22I TGATCA 2 cut(s) 37, 1113
Kzo9I GATC 8 cut(s) 37, 52, 94, 116, 430, 643, 890, 1113
LmnI GCTCC 1 cut(s) 973
Lsp1109I GCAGC 3 cut(s) 193, 501, 1219
LweI GCATC 1 cut(s) 517
MaeI CTAG 1 cut(s) 15
MaeII ACGT 5 cut(s) 130, 217, 342, 683, 783
MaeIII GTNAC 1 cut(s) 1020
MalI GATC 8 cut(s) 39, 54, 96, 118, 432, 645, 892, 1115
MboI GATC 8 cut(s) 37, 52, 94, 116, 430, 643, 890, 1113
MboII GAAGA 6 cut(s) 16, 89, 143, 319, 898, 988
MflI RGATCY 2 cut(s) 430, 890
MluCI AATT 9 cut(s) 10, 457, 503, 615, 649, 826, 989, 1121, 1211
MlyI GAGTC 1 cut(s) 1090
MmeI TCCRAC 3 cut(s) 219, 602, 701
MroXI GAANNNNTTC 1 cut(s) 668
MseI TTAA 3 cut(s) 422, 933, 1044
MspI CCGG 1 cut(s) 1100
MvnI CGCG 2 cut(s) 295, 529
MwoI GCNNNNNNNGC 1 cut(s) 1100
NdeII GATC 8 cut(s) 37, 52, 94, 116, 430, 643, 890, 1113
NlaIII CATG 4 cut(s) 734, 796, 925, 1135
NlaIV GGNNCC 1 cut(s) 847
NmuCI GTSAC 1 cut(s) 1020
PagI TCATGA 1 cut(s) 921
PauI GCGCGC 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 2 cut(s) 465, 638
PkrI GCNGC 4 cut(s) 183, 491, 531, 1209
PleI GAGTC 1 cut(s) 1090
PpsI GAGTC 1 cut(s) 1090
Ppu21I YACGTR 1 cut(s) 684
PpuMI RGGWCCY 1 cut(s) 370
PsiI TTATAA 1 cut(s) 969
Psp5II RGGWCCY 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 847
PspPI GGNCC 1 cut(s) 370
PspPPI RGGWCCY 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 125
PsuI RGATCY 2 cut(s) 430, 890
PteI GCGCGC 1 cut(s) 293
RsaI GTAC 5 cut(s) 58, 289, 401, 686, 847
RsaNI GTAC 5 cut(s) 57, 288, 400, 685, 846
SaqAI TTAA 3 cut(s) 422, 933, 1044
SatI GCNGC 4 cut(s) 182, 490, 530, 1208
Sau3AI GATC 8 cut(s) 37, 52, 94, 116, 430, 643, 890, 1113
Sau96I GGNCC 1 cut(s) 370
SchI GAGTC 1 cut(s) 1090
SfaNI GCATC 1 cut(s) 517
SinI GGWCC 1 cut(s) 370
SmlI CTYRAG 2 cut(s) 45, 895
SmoI CTYRAG 2 cut(s) 45, 895
Sse9I AATT 9 cut(s) 10, 457, 503, 615, 649, 826, 989, 1121, 1211
SsiI CCGC 2 cut(s) 529, 1103
SspMI CTAG 1 cut(s) 15
TaaI ACNGT 4 cut(s) 248, 283, 499, 961
TaiI ACGT 5 cut(s) 133, 220, 345, 686, 786
TaqI TCGA 2 cut(s) 569, 700
TasI AATT 9 cut(s) 10, 457, 503, 615, 649, 826, 989, 1121, 1211
TatI WGTACW 1 cut(s) 287
TauI GCSGC 1 cut(s) 532
TfiI GAWTC 2 cut(s) 465, 638
Tru1I TTAA 3 cut(s) 422, 933, 1044
Tru9I TTAA 3 cut(s) 422, 933, 1044
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 1020
TseI GCWGC 3 cut(s) 181, 489, 1207
Tsp45I GTSAC 1 cut(s) 1020
TspGWI ACGGA 3 cut(s) 59, 1074, 1133
TspRI CASTG 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 370
XapI RAATTY 5 cut(s) 10, 457, 615, 826, 989
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.