Rh1BG144900

F-box kelch-repeat protein At1g57790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000673
Physical Location & Seq
Reverse (-)
23969898 .. 23970851
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG144900.1

Sequence Viewer

Length: 954 bp
ATGCCCTGGGTAATGCACTCTTTGACATCAACTGATAAGGCATCCTCTTGCAAATTCAAGATTTCCGACTTTTGGAGAAATCGAACTTACCCTCTTGATAGAATCCTAAACAAAGATATGAAAGAATTATGTCATAATTATCATGGCAAATTCAGAGTTTGTGATTCAAAATATGGTTGGTTGTTGCTCTTCTTTGAACACATACATTCTGTCGCATGGCCGCGCAAAGTCCAGTTCTTGTTTTACAATCCTTTCCGTAATGTGACTATCAAATTACCTTCATTACATTTGGCAGGGGATGAAGATGTAGGGATAGCAAAGTTCATGACAACTCCATCTGGCTGTCCTCCTACTTGCGATATCGTTTTCATGTGTCATCAACATAGATATTATGGAGCAACAAAAGATTACATGTTGTATACATTTAATGAAGATAGACGCTGGAGTAAGTTTAAAATTGATACATTTCTACGGTACACACAATGTGACGTTGCTTATGCAGATGAAACTTTTTACTGTGCTTTTCATCACTTCGGATTGGTAGCGATGGGTACCTTCAGCGTTGCACTCCAACGTTTTGCCATGGATCTTTCCTTTTTTTCAGGACTTGATGGTATTGATCACCTGTACCTGGTTGAGTTTGGTGGAGATATCTATTCCATTCCTATTAAGCATGGTGTTTGTAATGTTTACCAGCTTGAGCGGTCACGAAAAGTATGGACTCGAATTAAAAGCTTGGGAAATCGGGTTTTTATTTTGTGCGACCGCTCGTCAAGTATGGTAGTTCCTGCTGTGGGAGAAGCCGAGGAATGTGCAGACATGATATTTTTGTATGGAAACGACCGGCGACGGGTCTTTATTAGCGACACTGAAGGCACTTGGAGAATTAACAAACAACATGATTTAGGAGATTCCTTGAGAGAATATATTTTCATTCAGCCGCCTGACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

317

Amino Acids

37.15

Weight (kDa)

7.97

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 49 - 265 5.2e-17 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 551
AccBSI CCGCTC 2 cut(s) 703, 768
AccI GTMKAC 1 cut(s) 419
AccII CGCG 1 cut(s) 223
AciI CCGC 4 cut(s) 221, 703, 766, 941
AclI AACGTT 1 cut(s) 574
AclWI GGATC 1 cut(s) 594
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 2 cut(s) 53, 149
AcuI CTGAAG 2 cut(s) 541, 891
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 3 cut(s) 476, 553, 629
AfiI CCNNNNNNNGG 4 cut(s) 72, 631, 794, 850
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 3 cut(s) 58, 168, 197
AhdI GACNNNNNGTC 1 cut(s) 769
AjnI CCWGG 2 cut(s) 5, 630
AluBI AGCT 2 cut(s) 697, 735
AluI AGCT 2 cut(s) 697, 735
AlwI GGATC 1 cut(s) 594
AoxI GGCC 1 cut(s) 218
ApoI RAATTY 2 cut(s) 53, 149
Asp718I GGTACC 1 cut(s) 551
AspLEI GCGC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 614
BanI GGYRCC 1 cut(s) 551
BccI CCATC 3 cut(s) 343, 541, 605
BcgI CGANNNNNNTGC 2 cut(s) 794, 828
BciT130I CCWGG 2 cut(s) 7, 632
BclI TGATCA 1 cut(s) 619
BisI GCNGC 2 cut(s) 221, 941
BlsI GCNGC 2 cut(s) 222, 942
Bme1390I CCNGG 2 cut(s) 7, 632
BmeRI GACNNNNNGTC 1 cut(s) 769
BmiI GGNNCC 1 cut(s) 553
BmrFI CCNGG 2 cut(s) 7, 632
BmsI GCATC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 463
BpuEI CTTGAG 2 cut(s) 719, 937
BsaJI CCNNGG 4 cut(s) 5, 6, 582, 804
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 631, 794, 850
Bse118I RCCGGY 1 cut(s) 843
Bse1I ACTGG 1 cut(s) 232
BseBI CCWGG 2 cut(s) 7, 632
BseDI CCNNGG 4 cut(s) 5, 6, 582, 804
BseGI GGATG 2 cut(s) 41, 304
BseLI CCNNNNNNNGG 4 cut(s) 72, 631, 794, 850
BseNI ACTGG 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 834
Bsh1236I CGCG 1 cut(s) 223
Bsh1285I CGRYCG 2 cut(s) 766, 844
BshFI GGCC 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 551
BsiEI CGRYCG 2 cut(s) 766, 844
BsiSI CCGG 1 cut(s) 844
BslI CCNNNNNNNGG 4 cut(s) 72, 631, 794, 850
BsnI GGCC 1 cut(s) 220
Bsp143I GATC 2 cut(s) 586, 619
Bsp19I CCATGG 1 cut(s) 582
BspACI CCGC 4 cut(s) 221, 703, 766, 941
BspANI GGCC 1 cut(s) 220
BspFNI CGCG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 553
BspPI GGATC 1 cut(s) 594
BspQI GCTCTTC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 551
BsrBI CCGCTC 2 cut(s) 703, 768
BsrFI RCCGGY 1 cut(s) 843
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 843
BssECI CCNNGG 4 cut(s) 5, 6, 582, 804
BssMI GATC 2 cut(s) 586, 619
BssNAI GTATAC 1 cut(s) 420
BssT1I CCWWGG 1 cut(s) 582
Bst1107I GTATAC 1 cut(s) 420
Bst2UI CCWGG 2 cut(s) 7, 632
Bst4CI ACNGT 2 cut(s) 474, 518
Bst6I CTCTTC 1 cut(s) 194
BstDSI CCRYGG 1 cut(s) 582
BstF5I GGATG 2 cut(s) 41, 304
BstFNI CGCG 1 cut(s) 223
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 2 cut(s) 589, 622
BstMBI GATC 2 cut(s) 586, 619
BstMCI CGRYCG 2 cut(s) 766, 844
BstNI CCWGG 2 cut(s) 7, 632
BstNSI RCATGY 1 cut(s) 415
BstSCI CCNGG 2 cut(s) 5, 630
BstUI CGCG 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BstZ17I GTATAC 1 cut(s) 420
BsuRI GGCC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 582
BtgZI GCGATG 1 cut(s) 560
BtsCI GGATG 2 cut(s) 41, 304
BtsIMutI CAGTG 1 cut(s) 867
CciI TCATGA 1 cut(s) 324
CfoI GCGC 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 843
CseI GACGC 1 cut(s) 447
CsiI ACCWGGT 1 cut(s) 630
Csp6I GTAC 3 cut(s) 475, 552, 628
CviAII CATG 9 cut(s) 143, 216, 325, 370, 412, 583, 674, 820, 899
CviJI RGCY 6 cut(s) 220, 342, 697, 735, 803, 940
CviKI_1 RGCY 6 cut(s) 220, 342, 697, 735, 803, 940
CviQI GTAC 3 cut(s) 475, 552, 628
DpnI GATC 2 cut(s) 588, 621
DpnII GATC 2 cut(s) 586, 619
DraI TTTAAA 1 cut(s) 454
DraIII CACNNNGTG 1 cut(s) 485
DriI GACNNNNNGTC 1 cut(s) 769
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 194
Eam1105I GACNNNNNGTC 1 cut(s) 769
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 582
Eco32I GATATC 2 cut(s) 361, 652
Eco57I CTGAAG 2 cut(s) 541, 891
EcoRII CCWGG 2 cut(s) 5, 630
EcoRV GATATC 2 cut(s) 361, 652
EcoT14I CCWWGG 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 9 cut(s) 146, 219, 328, 373, 415, 586, 677, 823, 902
FatI CATG 9 cut(s) 142, 215, 324, 369, 411, 582, 673, 819, 898
FbaI TGATCA 1 cut(s) 619
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 2 cut(s) 221, 941
FokI GGATG 2 cut(s) 28, 311
Fsp4HI GCNGC 2 cut(s) 221, 941
GlaI GCGC 1 cut(s) 224
GluI GCNGC 2 cut(s) 221, 941
GsuI CTGGAG 1 cut(s) 463
HaeIII GGCC 1 cut(s) 220
HapII CCGG 1 cut(s) 844
HgaI GACGC 1 cut(s) 447
HhaI GCGC 1 cut(s) 225
Hin1II CATG 9 cut(s) 146, 219, 328, 373, 415, 586, 677, 823, 902
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 733
HinfI GANTC 4 cut(s) 102, 164, 721, 911
HpaII CCGG 1 cut(s) 844
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 3 cut(s) 420, 477, 691
Hpy188I TCNGA 3 cut(s) 67, 155, 536
Hpy188III TCNNGA 5 cut(s) 58, 95, 325, 603, 708
Hpy8I GTNNAC 3 cut(s) 420, 477, 691
Hpy99I CGWCG 1 cut(s) 852
HpyAV CCTTC 3 cut(s) 288, 565, 866
HpyCH4III ACNGT 2 cut(s) 474, 518
HpyCH4IV ACGT 2 cut(s) 489, 574
HpyCH4V TGCA 5 cut(s) 16, 51, 500, 566, 815
HpySE526I ACGT 2 cut(s) 489, 574
Hsp92II CATG 9 cut(s) 146, 219, 328, 373, 415, 586, 677, 823, 902
HspAI GCGC 1 cut(s) 223
KpnI GGTACC 1 cut(s) 555
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 2 cut(s) 586, 619
LguI GCTCTTC 1 cut(s) 194
LmnI GCTCC 1 cut(s) 395
LweI GCATC 1 cut(s) 50
MabI ACCWGGT 1 cut(s) 630
MaeII ACGT 2 cut(s) 489, 574
MaeIII GTNAC 3 cut(s) 262, 485, 705
MalI GATC 2 cut(s) 588, 621
MbiI CCGCTC 2 cut(s) 703, 768
MboI GATC 2 cut(s) 586, 619
MboII GAAGA 3 cut(s) 181, 314, 443
MflI RGATCY 1 cut(s) 586
MluCI AATT 8 cut(s) 53, 125, 136, 149, 272, 456, 726, 885
MlyI GAGTC 1 cut(s) 715
MmeI TCCRAC 2 cut(s) 90, 595
MnlI CCTC 4 cut(s) 55, 102, 357, 799
MseI TTAA 5 cut(s) 426, 453, 669, 729, 888
MspI CCGG 1 cut(s) 844
MspR9I CCNGG 2 cut(s) 7, 632
MvaI CCWGG 2 cut(s) 7, 632
MvnI CGCG 1 cut(s) 223
NcoI CCATGG 1 cut(s) 582
NdeII GATC 2 cut(s) 586, 619
NlaIII CATG 9 cut(s) 146, 219, 328, 373, 415, 586, 677, 823, 902
NlaIV GGNNCC 1 cut(s) 553
NmeAIII GCCGAG 1 cut(s) 829
NmuCI GTSAC 3 cut(s) 262, 485, 705
NspI RCATGY 1 cut(s) 415
PagI TCATGA 1 cut(s) 324
PasI CCCWGGG 1 cut(s) 6
PciI ACATGT 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 194
PfeI GAWTC 3 cut(s) 102, 164, 911
PkrI GCNGC 2 cut(s) 222, 942
PleI GAGTC 1 cut(s) 715
PpsI GAGTC 1 cut(s) 715
PscI ACATGT 1 cut(s) 411
Psp1406I AACGTT 1 cut(s) 574
Psp6I CCWGG 2 cut(s) 5, 630
PspGI CCWGG 2 cut(s) 5, 630
PspN4I GGNNCC 1 cut(s) 553
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 3 cut(s) 476, 553, 629
RsaNI GTAC 3 cut(s) 475, 552, 628
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 5 cut(s) 426, 453, 669, 729, 888
SatI GCNGC 2 cut(s) 221, 941
Sau3AI GATC 2 cut(s) 586, 619
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 2 cut(s) 7, 632
SetI ASST 8 cut(s) 280, 492, 557, 577, 627, 633, 699, 737
SexAI ACCWGGT 1 cut(s) 630
SfaNI GCATC 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 698, 916
SmoI CTYRAG 2 cut(s) 698, 916
Sse9I AATT 8 cut(s) 53, 125, 136, 149, 272, 456, 726, 885
SsiI CCGC 4 cut(s) 221, 703, 766, 941
StyD4I CCNGG 2 cut(s) 5, 630
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 2 cut(s) 474, 518
TaiI ACGT 2 cut(s) 492, 577
TaqI TCGA 2 cut(s) 82, 724
TasI AATT 8 cut(s) 53, 125, 136, 149, 272, 456, 726, 885
TauI GCSGC 2 cut(s) 223, 943
TfiI GAWTC 3 cut(s) 102, 164, 911
Tru1I TTAA 5 cut(s) 426, 453, 669, 729, 888
Tru9I TTAA 5 cut(s) 426, 453, 669, 729, 888
TscAI CASTG 1 cut(s) 874
TseFI GTSAC 3 cut(s) 262, 485, 705
Tsp45I GTSAC 3 cut(s) 262, 485, 705
TspDTI ATGAA 9 cut(s) 134, 270, 313, 315, 358, 444, 515, 519, 922
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 1 cut(s) 874
XapI RAATTY 2 cut(s) 53, 149
XceI RCATGY 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.