Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000673

Physical Location & Seq

Genomic Coordinates Forward (+)

30200121 .. 30217418

Gene Structure 17298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCACCAGCTAAGTTCTTGTTCTCGAGCCATTGGGCTAGAAGGAATTCTCGATTATGTAATTCACTTTCGATTGTCTTACTAAGCATCATGCCACTCACGTGGACCCAAGCTGCTATCACATTTTTGGAGTTTACAAGATTGGGTGTGATGTGGAAGGTTACGAAGACGGGATTTCAATTGGGTTTTCTTCACCTCAACCTCCTCTACACGTCCGTGGAAGCCATCAAGCGTGGGTTGAGCCGTGGTGGGCGCCGCAAGGCCGAGAAGAAGCTTTGGCGGGGACGAAATCGCCTTTGTCGGAATTGGAGATTCCGGCCACCTTTGCCGGTGATTCTTGAGGGTTTTGGAGCCCGAGGACGTAGATGCTTGTCCCCAAGCATAAGCACATGCAATCTCAAAGAAAGAAGATGGACAACTTATACCTCTAATGTTCCTCCGGAAGCAGAAATTTGGGAAGTAGTGTATGTGAATGGAAGTTTTTATTGTGCCTTCACCGATGGTTCAACCGTGGTATTAGGTACCTTCAATGTTGCACTTCGGGACTGGTCTATAGTGGACCATTCATCCTCCATAGAGATCAAACGGTGTGATTGTGTCTATCCGAAACCGCTTCCGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

207

Amino Acids

23.75

Weight (kDa)

10.29

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26661 FvH4_2g26662 FvH4_3g21700 FvH4_3g21711 FvH4_3g21801 FvH4_4g17781 FvH4_4g20671 FvH4_5g08112 FvH4_5g19010
pyrus_communis	pycom11g20050 pycom12g20870
rosa_chinensis	RchiOBHm_Chr3g0473991 RchiOBHm_Chr6g0295501
rosa_laevigata	RLG00000011844 RLG00000011846 RLG00000011847 RLG00000023960 RLG00000025447 RLG00000025455 RLG00000027507 RLG00000029040 RLG00000033754 RLG00000033763 RLG00000033780 RLG00000033784
rosa_multiflora	Rmu_co8461177.1_g000001 Rmu_sc0000006.1_g000007 Rmu_sc0000475.1_g000005 Rmu_sc0001331.1_g000009 Rmu_sc0001576.1_g000022 Rmu_sc0002271.1_g000033 Rmu_sc0002414.1_g000009 Rmu_sc0002521.1_g000001 Rmu_sc0003170.1_g000006 Rmu_sc0003854.1_g000002 Rmu_sc0004190.1_g000002 Rmu_sc0005137.1_g000016 Rmu_sc0006633.1_g000002 Rmu_sc0012290.1_g000003 Rmu_sc0022254.1_g000001 Rmu_sc0027615.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043510 Rroxscaffold_1G00043580 Rroxscaffold_1G00043780 Rroxscaffold_3G00266190 Rroxscaffold_4G00311360 Rroxscaffold_5G00368090 Rroxscaffold_6G00407580 Rroxscaffold_6G00425070 Rroxscaffold_6G00425130 Rroxscaffold_7G00173050
rosa_rugosa	Rorug02G0654500 Rorug04G0209000
rosa_samantha	Rh1AG322000 Rh1BG144900 Rh2CG355900 Rh3BG060900 Rh3BG216400 Rh3DG212200 Rh4CG284500 Rh5AG254200 Rh5BG255100 Rh5BG256200 Rh5CG287800 Rh5CG289200 Rh5CG289300 Rh6AG364700 Rh6BG366800 Rh6DG360500 Rh7AG097700 Rh7BG098700 Rh7CG099600
rosa_wichuraiana	Rw3G004540 Rw5G023530 Rw6G031400 Rw6G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	2 cut(s)	252, 521
AccIII	TCCGGA	1 cut(s)	439
AciI	CCGC	3 cut(s)	256, 280, 611
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	2 cut(s)	46, 450
AcvI	CACGTG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	253
AfaI	GTAC	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	179, 507, 529
AjiI	CACGTC	1 cut(s)	213
AleI	CACNNNNGTG	2 cut(s)	100, 215
AluBI	AGCT	3 cut(s)	11, 113, 274
AluI	AGCT	3 cut(s)	11, 113, 274
Ama87I	CYCGRG	2 cut(s)	25, 354
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	2 cut(s)	261, 317
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	2 cut(s)	46, 450
Asp700I	GAANNNNTTC	1 cut(s)	46
Asp718I	GGTACC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	105, 559
AsuHPI	GGTGA	3 cut(s)	185, 343, 487
AvaI	CYCGRG	2 cut(s)	25, 354
AvaII	GGWCC	2 cut(s)	105, 559
BanI	GGYRCC	2 cut(s)	252, 521
BanII	GRGCYC	1 cut(s)	355
BbrPI	CACGTG	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	3 cut(s)	233, 405, 494
BceAI	ACGGC	1 cut(s)	228
BfaI	CTAG	2 cut(s)	39, 622
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	256
BisI	GCNGC	2 cut(s)	114, 256
BlsI	GCNGC	2 cut(s)	115, 257
Bme18I	GGWCC	2 cut(s)	105, 559
BmeT110I	CYCGRG	2 cut(s)	25, 354
BmgBI	CACGTC	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	105, 559
BmiI	GGNNCC	4 cut(s)	107, 254, 352, 523
BmsI	GCATC	2 cut(s)	96, 356
BpiI	GAAGAC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	359
BsaAI	YACGTR	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	253
BsaJI	CCNNGG	4 cut(s)	216, 244, 355, 510
BsaWI	WCCGGW	2 cut(s)	439, 616
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	551
BseAI	TCCGGA	1 cut(s)	439
BseDI	CCNNGG	4 cut(s)	216, 244, 355, 510
BseGI	GGATG	1 cut(s)	566
BseNI	ACTGG	1 cut(s)	551
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	100
BshFI	GGCC	2 cut(s)	263, 319
BshNI	GGYRCC	2 cut(s)	252, 521
BsiHKCI	CYCGRG	2 cut(s)	25, 354
BsiSI	CCGG	4 cut(s)	316, 329, 440, 617
BslFI	GGGAC	3 cut(s)	297, 358, 557
BsmFI	GGGAC	3 cut(s)	297, 358, 557
BsnI	GGCC	2 cut(s)	263, 319
BsoBI	CYCGRG	2 cut(s)	25, 354
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	579
BspACI	CCGC	3 cut(s)	256, 280, 611
BspANI	GGCC	2 cut(s)	263, 319
BspEI	TCCGGA	1 cut(s)	439
BspLI	GGNNCC	4 cut(s)	107, 254, 352, 523
BspT107I	GGYRCC	2 cut(s)	252, 521
BsrFI	RCCGGY	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	551
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	4 cut(s)	216, 244, 355, 510
BssMI	GATC	1 cut(s)	579
BssNI	GRCGYC	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	511, 588
BstACI	GRCGYC	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	12, 83
BstDSI	CCRYGG	3 cut(s)	216, 244, 510
BstF5I	GGATG	1 cut(s)	566
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	582
BstMBI	GATC	1 cut(s)	579
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	263, 319
BtgI	CCRYGG	3 cut(s)	216, 244, 510
BtrI	CACGTC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	566
CfoI	GCGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	105, 559
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	2 cut(s)	91, 390
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	2 cut(s)	12, 83
DinI	GGCGCC	1 cut(s)	254
DpnI	GATC	1 cut(s)	581
DpnII	GATC	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	355
Eco47I	GGWCC	2 cut(s)	105, 559
Eco72I	CACGTG	1 cut(s)	102
Eco88I	CYCGRG	2 cut(s)	25, 354
EcoRI	GAATTC	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	355
EgeI	GGCGCC	1 cut(s)	254
EheI	GGCGCC	1 cut(s)	254
FaeI	CATG	2 cut(s)	94, 393
FaiI	YATR	8 cut(s)	58, 92, 383, 391, 423, 468, 554, 575
FaqI	GGGAC	3 cut(s)	297, 358, 557
FatI	CATG	2 cut(s)	90, 389
FauI	CCCGC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	114, 256
FokI	GGATG	1 cut(s)	553
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	2 cut(s)	114, 256
FspBI	CTAG	2 cut(s)	39, 622
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	114, 256
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	2 cut(s)	263, 319
HapII	CCGG	4 cut(s)	316, 329, 440, 617
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	94, 393
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	2 cut(s)	312, 334
HpaII	CCGG	4 cut(s)	316, 329, 440, 617
HphI	GGTGA	3 cut(s)	185, 343, 487
Hpy166II	GTNNAC	3 cut(s)	105, 135, 559
Hpy188I	TCNGA	2 cut(s)	303, 606
Hpy188III	TCNNGA	5 cut(s)	25, 51, 338, 440, 542
Hpy8I	GTNNAC	3 cut(s)	105, 135, 559
HpyAV	CCTTC	4 cut(s)	36, 151, 502, 535
HpyCH4III	ACNGT	2 cut(s)	511, 588
HpyCH4IV	ACGT	3 cut(s)	101, 212, 361
HpyCH4V	TGCA	2 cut(s)	393, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	2 cut(s)	12, 83
HpySE526I	ACGT	3 cut(s)	101, 212, 361
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	94, 393
HspAI	GCGC	1 cut(s)	253
KasI	GGCGCC	1 cut(s)	252
Kpn2I	TCCGGA	1 cut(s)	439
KpnI	GGTACC	1 cut(s)	525
Kzo9I	GATC	1 cut(s)	579
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	5 cut(s)	21, 329, 342, 453, 532
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	2 cut(s)	96, 356
MaeI	CTAG	2 cut(s)	39, 622
MaeII	ACGT	3 cut(s)	101, 212, 361
MaeIII	GTNAC	2 cut(s)	3, 160
MalI	GATC	1 cut(s)	581
MboI	GATC	1 cut(s)	579
MboII	GAAGA	4 cut(s)	178, 182, 280, 420
MfeI	CAATTG	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	5 cut(s)	46, 61, 179, 304, 450
Mly113I	GGCGCC	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	8 cut(s)	206, 212, 215, 334, 350, 436, 447, 580
MroI	TCCGGA	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	46
MslI	CAYNNNNRTG	2 cut(s)	100, 215
MspI	CCGG	4 cut(s)	316, 329, 440, 617
MunI	CAATTG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	325
NarI	GGCGCC	1 cut(s)	253
NdeII	GATC	1 cut(s)	579
NlaIII	CATG	2 cut(s)	94, 393
NlaIV	GGNNCC	4 cut(s)	107, 254, 352, 523
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	393
OliI	CACNNNNGTG	2 cut(s)	100, 215
PaeR7I	CTCGAG	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	46
PfeI	GAWTC	2 cut(s)	312, 334
PkrI	GCNGC	2 cut(s)	115, 257
PluTI	GGCGCC	1 cut(s)	256
PmaCI	CACGTG	1 cut(s)	102
PmlI	CACGTG	1 cut(s)	102
Ppu21I	YACGTR	1 cut(s)	102
PspCI	CACGTG	1 cut(s)	102
PspN4I	GGNNCC	4 cut(s)	107, 254, 352, 523
PspPI	GGNCC	2 cut(s)	105, 559
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	2 cut(s)	100, 215
SatI	GCNGC	2 cut(s)	114, 256
Sau3AI	GATC	1 cut(s)	579
Sau96I	GGNCC	2 cut(s)	105, 559
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	96, 356
SfcI	CTRYAG	1 cut(s)	552
SfoI	GGCGCC	1 cut(s)	254
Sfr274I	CTCGAG	1 cut(s)	25
SinI	GGWCC	2 cut(s)	105, 559
SlaI	CTCGAG	1 cut(s)	25
SmiMI	CAYNNNNRTG	2 cut(s)	100, 215
SmlI	CTYRAG	2 cut(s)	25, 338
SmoI	CTYRAG	2 cut(s)	25, 338
Sse9I	AATT	5 cut(s)	46, 61, 179, 304, 450
SsiI	CCGC	3 cut(s)	256, 280, 611
SspDI	GGCGCC	1 cut(s)	252
SspMI	CTAG	2 cut(s)	39, 622
TaaI	ACNGT	2 cut(s)	511, 588
TaiI	ACGT	3 cut(s)	104, 215, 364
TaqI	TCGA	3 cut(s)	26, 52, 71
TasI	AATT	5 cut(s)	46, 61, 179, 304, 450
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	312, 334
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	555
TspGWI	ACGGA	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	105, 559
XapI	RAATTY	2 cut(s)	46, 450
XceI	RCATGY	1 cut(s)	393
XhoI	CTCGAG	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	46
XspI	CTAG	2 cut(s)	39, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.