Rh1AG322000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
55595496 .. 55595984
489 bp
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UTR
Exon/CDS
Intron
Rh1AG322000.1

Sequence Viewer

Length: 489 bp
ATGGAAGGAAATTTTTACTGTGCTTTTGATGGAGGTGCATCATTATGGGTAGGTAAATTCAACGTTGCTCTTCAAGATTGGACTGCGATGGATGATTGTTATTCCCCCCTTTTAAACATCAACTCTGGCTTACCTTGCTTTAAGTTGGTCGAGTCTGATGGAGATCTCTTATTGGCGGTTCATAATAATTTCGGGATGGCGAGACCCATATCTATTGTCCGGTTTGATTGGTCTCAGAATGTTTGGATTCGACTTAGAAACTTGGGGAAACGAGTGTTGTTTTGCTCGCTGTTAGGAGCGTTTGCAATGCCAGCAGTGGGAGAGAGCAGTGAGTTTGCAAATATGATAATTTGGAGTTGGATGGCCAATGAATATTGTTGTATTTGTTATACTGAAGGTACTTGGACTGAGAGTACTGATAAGTTTCGGAAATTACTTTCAAGTAATGGTAGACAAACTTGGATTGAACCCTTCTCACTGTGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.41

Weight (kDa)

4.91

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 451
AciI CCGC 1 cut(s) 176
AclI AACGTT 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 2 cut(s) 10, 56
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 2 cut(s) 400, 415
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 4 cut(s) 61, 74, 441, 467
Alw26I GTCTC 2 cut(s) 196, 237
AoxI GGCC 1 cut(s) 363
ApoI RAATTY 2 cut(s) 10, 56
BalI TGGCCA 1 cut(s) 365
BccI CCATC 5 cut(s) 23, 82, 152, 190, 355
BcoDI GTCTC 2 cut(s) 196, 237
BglII AGATCT 1 cut(s) 163
BmcAI AGTACT 1 cut(s) 415
BmsI GCATC 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 162
BsaI GGTCTC 2 cut(s) 196, 237
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 162
BseGI GGATG 3 cut(s) 97, 201, 366
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 248, 399
BshFI GGCC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 196, 237
BsnI GGCC 1 cut(s) 365
Bso31I GGTCTC 2 cut(s) 196, 237
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 2 cut(s) 247, 400
BspQI GCTCTTC 1 cut(s) 75
BspTNI GGTCTC 2 cut(s) 196, 237
BsrDI GCAATG 1 cut(s) 312
BssMI GATC 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 20, 480
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 287, 312
BstDEI CTNAG 3 cut(s) 234, 254, 408
BstF5I GGATG 3 cut(s) 97, 201, 366
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 2 cut(s) 196, 237
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 135, 311
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 1 cut(s) 365
BtgZI GCGATG 1 cut(s) 101
BtsCI GGATG 3 cut(s) 97, 201, 366
BtsI GCAGTG 2 cut(s) 321, 334
BtsIMutI CAGTG 3 cut(s) 321, 334, 476
Cac8I GCNNGC 2 cut(s) 287, 312
Csp6I GTAC 2 cut(s) 399, 414
CviJI RGCY 2 cut(s) 129, 365
CviKI_1 RGCY 2 cut(s) 129, 365
CviQI GTAC 2 cut(s) 399, 414
DdeI CTNAG 3 cut(s) 234, 254, 408
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DraI TTTAAA 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco31I GGTCTC 2 cut(s) 196, 237
Eco57I CTGAAG 1 cut(s) 414
FaiI YATR 6 cut(s) 46, 183, 209, 344, 390, 487
FblI GTMKAC 1 cut(s) 451
FokI GGATG 3 cut(s) 104, 208, 373
HaeIII GGCC 1 cut(s) 365
HapII CCGG 1 cut(s) 220
HinfI GANTC 2 cut(s) 152, 247
HpaII CCGG 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 3 cut(s) 157, 237, 429
Hpy188III TCNNGA 2 cut(s) 74, 193
Hpy8I GTNNAC 1 cut(s) 452
HpyAV CCTTC 2 cut(s) 389, 481
HpyCH4III ACNGT 2 cut(s) 20, 480
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 3 cut(s) 38, 305, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 311
HpyF3I CTNAG 3 cut(s) 234, 254, 408
HpySE526I ACGT 1 cut(s) 63
Kzo9I GATC 1 cut(s) 163
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 3 cut(s) 111, 233, 324
LweI GCATC 1 cut(s) 47
MaeII ACGT 1 cut(s) 63
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 1 cut(s) 62
MflI RGATCY 1 cut(s) 163
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 5 cut(s) 10, 56, 187, 348, 431
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 1 cut(s) 26
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MseI TTAA 2 cut(s) 113, 141
MslI CAYNNNNRTG 1 cut(s) 43
Msp20I TGGCCA 1 cut(s) 365
MspI CCGG 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 135, 311
NdeII GATC 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 247
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp1406I AACGTT 1 cut(s) 63
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 2 cut(s) 400, 415
RsaNI GTAC 2 cut(s) 399, 414
RseI CAYNNNNRTG 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 113, 141
Sau3AI GATC 1 cut(s) 163
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 1 cut(s) 161
SetI ASST 5 cut(s) 37, 55, 66, 136, 400
SfaNI GCATC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 43
Sse9I AATT 5 cut(s) 10, 56, 187, 348, 431
SsiI CCGC 1 cut(s) 176
SspI AATATT 1 cut(s) 374
TaaI ACNGT 2 cut(s) 20, 480
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 150, 250
TasI AATT 5 cut(s) 10, 56, 187, 348, 431
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 2 cut(s) 113, 141
Tru9I TTAA 2 cut(s) 113, 141
TscAI CASTG 3 cut(s) 321, 334, 483
TspDTI ATGAA 2 cut(s) 170, 384
TspRI CASTG 3 cut(s) 321, 334, 483
XapI RAATTY 2 cut(s) 10, 56
XmiI GTMKAC 1 cut(s) 451
ZrmI AGTACT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.