Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8461177.1

Orthogroup ID

OG0000673

Physical Location & Seq

Genomic Coordinates Reverse (-)

765 .. 1697

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8461177.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atgcagtataaccgtatcggaaacatgaatatccgtcaaggacatcagctctttggttgctgtcttcatgcttcgaaacacggttggttgcttttatcaaaaccacaagaaggaaagtgttattcattctttttctttgaccctctagcaggcaaaactatagaactaccttcactgaacaaggacggcaagtttgataatgaagaagatgttaaggtagcagctaccttttcgactagtccaactcattatgatgattgtgtcatctttgtggtcttacacagaagtactgatggtcaacgttctacgagcaaacattgttttataagcacatgtaacctcaataataaaagatggattactcgaaactactctcgccctcaagataacgaagttgaggccttagcttgtgtggatggagttttccactgtgttttttcccggggagtcttgtcattaatatttgctaccttccatgtatcctctgaagactgggtcatgacagactattccgccttttcgaaaatacaacgttttaagtttccagggaagtattacttagttgaggccggtggggagctcttatttgcattttatggtttagatcacagttttgatgggcatggagaaagaccttactggcatatctaccagtttgatcggtcacagaaaaattggactagagttttagagttagggaaccgagcattactcttatatggcacatcatcctccattatcatgagtctggcagagggggaaactagggaaattgcagacaaggtttttcgttttgattatgagtggaggcactgcactacctggattgataataataaaggtgagctactttgtccttcggataaaaagagccggtctagggagcaactcacaaaaatcacctttacctatcgacactttggttttaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

310

Amino Acids

36.03

Weight (kDa)

8.27

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26661 FvH4_2g26662 FvH4_3g21700 FvH4_3g21711 FvH4_3g21801 FvH4_4g17781 FvH4_4g20671 FvH4_5g08112 FvH4_5g19010
pyrus_communis	pycom11g20050 pycom12g20870
rosa_chinensis	RchiOBHm_Chr3g0473991 RchiOBHm_Chr6g0295501
rosa_laevigata	RLG00000011844 RLG00000011846 RLG00000011847 RLG00000023960 RLG00000025447 RLG00000025455 RLG00000027507 RLG00000029040 RLG00000033754 RLG00000033763 RLG00000033780 RLG00000033784
rosa_multiflora	Rmu_co8461177.1_g000001 Rmu_sc0000006.1_g000007 Rmu_sc0000475.1_g000005 Rmu_sc0001331.1_g000009 Rmu_sc0001576.1_g000022 Rmu_sc0002271.1_g000033 Rmu_sc0002414.1_g000009 Rmu_sc0002521.1_g000001 Rmu_sc0003170.1_g000006 Rmu_sc0003854.1_g000002 Rmu_sc0004190.1_g000002 Rmu_sc0005137.1_g000016 Rmu_sc0006633.1_g000002 Rmu_sc0012290.1_g000003 Rmu_sc0022254.1_g000001 Rmu_sc0027615.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043510 Rroxscaffold_1G00043580 Rroxscaffold_1G00043780 Rroxscaffold_3G00266190 Rroxscaffold_4G00311360 Rroxscaffold_5G00368090 Rroxscaffold_6G00407580 Rroxscaffold_6G00425070 Rroxscaffold_6G00425130 Rroxscaffold_7G00173050
rosa_rugosa	Rorug02G0654500 Rorug04G0209000
rosa_samantha	Rh1AG322000 Rh1BG144900 Rh2CG355900 Rh3BG060900 Rh3BG216400 Rh3DG212200 Rh4CG284500 Rh5AG254200 Rh5BG255100 Rh5BG256200 Rh5CG287800 Rh5CG289200 Rh5CG289300 Rh6AG364700 Rh6BG366800 Rh6DG360500 Rh7AG097700 Rh7BG098700 Rh7CG099600
rosa_wichuraiana	Rw3G004540 Rw5G023530 Rw6G031400 Rw6G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AciI	CCGC	1 cut(s)	513
AclI	AACGTT	2 cut(s)	301, 532
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	3 cut(s)	110, 149, 880
AflIII	ACRYGT	1 cut(s)	332
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	544, 821
AluBI	AGCT	5 cut(s)	49, 224, 407, 580, 847
AluI	AGCT	5 cut(s)	49, 224, 407, 580, 847
Alw21I	GWGCWC	1 cut(s)	582
Ama87I	CYCGRG	1 cut(s)	441
AoxI	GGCC	2 cut(s)	399, 567
ApeKI	GCWGC	1 cut(s)	221
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AseI	ATTAAT	1 cut(s)	458
AsuC2I	CCSGG	2 cut(s)	442, 443
AsuHPI	GGTGA	2 cut(s)	854, 892
AsuII	TTCGAA	2 cut(s)	74, 521
AvaI	CYCGRG	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	582
BbsI	GAAGAC	2 cut(s)	56, 495
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	4 cut(s)	287, 348, 410, 611
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	2 cut(s)	546, 823
BciVI	GTATCC	1 cut(s)	490
BcnI	CCSGG	2 cut(s)	442, 443
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	5 cut(s)	146, 237, 681, 765, 879
BfmI	CTRYAG	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	490
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	289
Bme1390I	CCNGG	4 cut(s)	442, 443, 546, 823
BmeT110I	CYCGRG	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	701
BmrFI	CCNGG	4 cut(s)	442, 443, 546, 823
BmrI	ACTGGG	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	502
BpiI	GAAGAC	2 cut(s)	56, 495
BplI	GAGNNNNNCTC	2 cut(s)	696, 728
Bpu10I	CCTNAGC	1 cut(s)	403
Bpu14I	TTCGAA	2 cut(s)	74, 521
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	2 cut(s)	442, 443
BsaJI	CCNNGG	3 cut(s)	441, 442, 545
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 149, 880
Bse118I	RCCGGY	2 cut(s)	569, 873
Bse1I	ACTGG	3 cut(s)	497, 644, 652
BseBI	CCWGG	2 cut(s)	546, 823
BseDI	CCNNGG	3 cut(s)	441, 442, 545
BseGI	GGATG	2 cut(s)	421, 728
BseLI	CCNNNNNNNGG	3 cut(s)	110, 149, 880
BseNI	ACTGG	3 cut(s)	497, 644, 652
BseXI	GCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	799
BshFI	GGCC	2 cut(s)	401, 569
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	441
BsiSI	CCGG	3 cut(s)	442, 570, 874
BslI	CCNNNNNNNGG	3 cut(s)	110, 149, 880
BsnI	GGCC	2 cut(s)	401, 569
BsoBI	CYCGRG	1 cut(s)	441
Bsp119I	TTCGAA	2 cut(s)	74, 521
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	2 cut(s)	604, 658
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	2 cut(s)	401, 569
BspHI	TCATGA	2 cut(s)	498, 741
BspLI	GGNNCC	1 cut(s)	701
BspT104I	TTCGAA	2 cut(s)	74, 521
BsrFI	RCCGGY	2 cut(s)	569, 873
BsrI	ACTGG	3 cut(s)	497, 644, 652
BssAI	RCCGGY	2 cut(s)	569, 873
BssECI	CCNNGG	3 cut(s)	441, 442, 545
BssMI	GATC	2 cut(s)	604, 658
Bst2UI	CCWGG	2 cut(s)	546, 823
Bst4CI	ACNGT	4 cut(s)	14, 83, 431, 611
BstBI	TTCGAA	2 cut(s)	74, 521
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	403, 559
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	421, 728
BstKTI	GATC	2 cut(s)	607, 661
BstMBI	GATC	2 cut(s)	604, 658
BstNI	CCWGG	2 cut(s)	546, 823
BstNSI	RCATGY	1 cut(s)	336
BstSCI	CCNGG	4 cut(s)	440, 441, 544, 821
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	2 cut(s)	56, 495
BsuI	GTATCC	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	401, 569
BtsCI	GGATG	2 cut(s)	421, 728
BtsI	GCAGTG	1 cut(s)	811
BtsIMutI	CAGTG	3 cut(s)	173, 427, 811
Cac8I	GCNNGC	1 cut(s)	151
CciI	TCATGA	2 cut(s)	498, 741
Cfr10I	RCCGGY	2 cut(s)	569, 873
Cfr9I	CCCGGG	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	7 cut(s)	25, 68, 333, 476, 499, 623, 742
CviJI	RGCY	8 cut(s)	49, 224, 401, 407, 569, 580, 847, 873
CviKI_1	RGCY	8 cut(s)	49, 224, 401, 407, 569, 580, 847, 873
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	403, 559
DpnI	GATC	2 cut(s)	606, 660
DpnII	GATC	2 cut(s)	604, 658
EciI	GGCGGA	1 cut(s)	502
Ecl136II	GAGCTC	1 cut(s)	580
Eco147I	AGGCCT	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	582
Eco53kI	GAGCTC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	580
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	544, 821
EcoT38I	GRGCYC	1 cut(s)	582
FaeI	CATG	7 cut(s)	28, 71, 336, 479, 502, 626, 745
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FatI	CATG	7 cut(s)	24, 67, 332, 475, 498, 622, 741
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	2 cut(s)	428, 715
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	5 cut(s)	146, 237, 681, 765, 879
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	401, 569
HapII	CCGG	3 cut(s)	442, 570, 874
Hin1II	CATG	7 cut(s)	28, 71, 336, 479, 502, 626, 745
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HinfI	GANTC	2 cut(s)	447, 745
HpaII	CCGG	3 cut(s)	442, 570, 874
HphI	GGTGA	2 cut(s)	854, 892
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	3 cut(s)	20, 487, 862
Hpy188III	TCNNGA	3 cut(s)	383, 499, 742
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	4 cut(s)	104, 180, 481, 867
HpyCH4III	ACNGT	4 cut(s)	14, 83, 431, 611
HpyCH4IV	ACGT	2 cut(s)	301, 532
HpyCH4V	TGCA	4 cut(s)	4, 590, 776, 816
HpyF3I	CTNAG	2 cut(s)	403, 559
HpySE526I	ACGT	2 cut(s)	301, 532
Hsp92II	CATG	7 cut(s)	28, 71, 336, 479, 502, 626, 745
Kzo9I	GATC	2 cut(s)	604, 658
LmnI	GCTCC	2 cut(s)	577, 883
Lsp1109I	GCAGC	1 cut(s)	233
MaeI	CTAG	5 cut(s)	146, 237, 681, 765, 879
MaeII	ACGT	2 cut(s)	301, 532
MaeIII	GTNAC	2 cut(s)	335, 663
MalI	GATC	2 cut(s)	606, 660
MboI	GATC	2 cut(s)	604, 658
MboII	GAAGA	4 cut(s)	56, 215, 218, 500
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	2 cut(s)	673, 771
MlyI	GAGTC	2 cut(s)	456, 754
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	9 cut(s)	153, 350, 390, 391, 493, 559, 742, 748, 801
MseI	TTAA	3 cut(s)	213, 458, 537
MslI	CAYNNNNRTG	3 cut(s)	252, 269, 740
MspI	CCGG	3 cut(s)	442, 570, 874
MspR9I	CCNGG	4 cut(s)	442, 443, 546, 823
MvaI	CCWGG	2 cut(s)	546, 823
NciI	CCSGG	2 cut(s)	442, 443
NdeII	GATC	2 cut(s)	604, 658
NlaIII	CATG	7 cut(s)	28, 71, 336, 479, 502, 626, 745
NlaIV	GGNNCC	1 cut(s)	701
NmuCI	GTSAC	1 cut(s)	663
NspI	RCATGY	1 cut(s)	336
NspV	TTCGAA	2 cut(s)	74, 521
PagI	TCATGA	2 cut(s)	498, 741
PceI	AGGCCT	1 cut(s)	401
PciI	ACATGT	1 cut(s)	332
PflFI	GACNNNGTC	1 cut(s)	494
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	455, 753
PpsI	GAGTC	2 cut(s)	455, 753
PscI	ACATGT	1 cut(s)	332
PshBI	ATTAAT	1 cut(s)	458
PsiI	TTATAA	1 cut(s)	326
Psp124BI	GAGCTC	1 cut(s)	582
Psp1406I	AACGTT	2 cut(s)	301, 532
Psp6I	CCWGG	2 cut(s)	544, 821
PspGI	CCWGG	2 cut(s)	544, 821
PspN4I	GGNNCC	1 cut(s)	701
PsyI	GACNNNGTC	1 cut(s)	494
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	3 cut(s)	252, 269, 740
SacI	GAGCTC	1 cut(s)	582
SaqAI	TTAA	3 cut(s)	213, 458, 537
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	604, 658
ScaI	AGTACT	1 cut(s)	289
SchI	GAGTC	2 cut(s)	456, 754
ScrFI	CCNGG	4 cut(s)	442, 443, 546, 823
SduI	GDGCHC	1 cut(s)	582
SfcI	CTRYAG	1 cut(s)	159
SfuI	TTCGAA	2 cut(s)	74, 521
SmaI	CCCGGG	1 cut(s)	443
SmiMI	CAYNNNNRTG	3 cut(s)	252, 269, 740
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	2 cut(s)	673, 771
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	1 cut(s)	513
SspI	AATATT	1 cut(s)	462
SspMI	CTAG	5 cut(s)	146, 237, 681, 765, 879
SstI	GAGCTC	1 cut(s)	582
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	4 cut(s)	440, 441, 544, 821
TaaI	ACNGT	4 cut(s)	14, 83, 431, 611
TaiI	ACGT	2 cut(s)	304, 535
TaqI	TCGA	5 cut(s)	74, 233, 364, 521, 913
TaqII	GACCGA	1 cut(s)	651
TasI	AATT	2 cut(s)	673, 771
TatI	WGTACW	1 cut(s)	287
Tru1I	TTAA	3 cut(s)	213, 458, 537
Tru9I	TTAA	3 cut(s)	213, 458, 537
TscAI	CASTG	3 cut(s)	180, 434, 818
TseFI	GTSAC	1 cut(s)	663
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	663
TspDTI	ATGAA	4 cut(s)	41, 56, 114, 216
TspGWI	ACGGA	1 cut(s)	23
TspMI	CCCGGG	1 cut(s)	441
TspRI	CASTG	3 cut(s)	180, 434, 818
Tth111I	GACNNNGTC	1 cut(s)	494
VspI	ATTAAT	1 cut(s)	458
XagI	CCTNNNNNAGG	1 cut(s)	147
XceI	RCATGY	1 cut(s)	336
XmaI	CCCGGG	1 cut(s)	441
XspI	CTAG	5 cut(s)	146, 237, 681, 765, 879
ZrmI	AGTACT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.