FvH4_5g19010

F-box kelch-repeat protein At1g57790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000673
Physical Location & Seq
Forward (+)
10936305 .. 10937683
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19010.t1

Sequence Viewer

Length: 642 bp
ATGGAATCATCAAGTCCAACTTCTCCTGATTGTGTTATATTTATCCTGTGGAACACAGTCACAGTTAATGATGATCTTGAGAGGAGCAGGTACTTCACTATAACCACATATACCCATAAAGATAGAAGATGGAGTATCTATGAGAATCCTTGTTTCAATGGTGGAGTATTTGAGGGTGCTGCTTATGCTTGTGGAGTTTTCTACTGTGCTCTAGTTAACGATAATTCCGAGTTAGCATTGGGTACCTTCAATGTCGCACTCCGAGAATGGGAGGTGATGGATGATTCTACCTGCTTGGAACTAAATTACGGCCCCGTTTATTTGGTTAATTCTGGTTCTAAGGATCTCCTATTGGCATCTTTTCATGAGTATGATGAGCAAACTTATGATTACCACTGTTGCCATATTTACCGGTTTGATTTGTCCCAAAAAGAATGGACAAGATTTGCCAGTTTGGGCAACCGGGTACTGATTATCAGCGAATCGGTCAGGTCATCACATCTATGTCCGGCTGCCGGAGTGACTAGTGAATATGCTAACTTGATACTTCATTCCTCCCGGAAGAAGATCAATAAGTTTTGTGCTCGCAAGGGAGATGAAAAGGAATGGGAATGGATATTGTATGCAAAGAAAAATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

214

Amino Acids

24.53

Weight (kDa)

5.38

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 3 - 165 5.6e-09 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 78, 299
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AclWI GGATC 1 cut(s) 351
AfaI GTAC 3 cut(s) 92, 244, 468
AfiI CCNNNNNNNGG 2 cut(s) 268, 515
AgeI ACCGGT 1 cut(s) 411
AgsI TTSAA 2 cut(s) 157, 250
AhlI ACTAGT 1 cut(s) 524
Alw21I GWGCWC 2 cut(s) 211, 586
AlwI GGATC 1 cut(s) 351
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 179, 512
AsiGI ACCGGT 1 cut(s) 411
Asp718I GGTACC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 311
AsuC2I CCSGG 2 cut(s) 464, 559
AsuHPI GGTGA 1 cut(s) 286
BanI GGYRCC 1 cut(s) 242
Bbv12I GWGCWC 2 cut(s) 211, 586
BbvI GCAGC 2 cut(s) 166, 499
BccI CCATC 2 cut(s) 123, 271
BceAI ACGGC 1 cut(s) 325
BcnI CCSGG 2 cut(s) 464, 559
BcuI ACTAGT 1 cut(s) 524
BfaI CTAG 2 cut(s) 212, 525
BfuAI ACCTGC 2 cut(s) 78, 299
BisI GCNGC 2 cut(s) 180, 513
BlsI GCNGC 2 cut(s) 181, 514
Bme1390I CCNGG 2 cut(s) 464, 559
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 2 cut(s) 244, 313
BmrFI CCNGG 2 cut(s) 464, 559
BmsI GCATC 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 2 cut(s) 464, 559
BsaWI WCCGGW 1 cut(s) 411
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 515
Bse118I RCCGGY 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 450
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 268, 515
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 2 cut(s) 166, 499
BshFI GGCC 1 cut(s) 312
BshNI GGYRCC 1 cut(s) 242
BshTI ACCGGT 1 cut(s) 411
BsiHKAI GWGCWC 2 cut(s) 211, 586
BsiSI CCGG 5 cut(s) 412, 463, 509, 516, 559
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 2 cut(s) 268, 515
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 1 cut(s) 312
Bsp1286I GDGCHC 2 cut(s) 211, 586
Bsp143I GATC 3 cut(s) 73, 343, 567
BspANI GGCC 1 cut(s) 312
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 244, 313
BspMI ACCTGC 2 cut(s) 78, 299
BspPI GGATC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 411
BsrI ACTGG 1 cut(s) 450
BssAI RCCGGY 1 cut(s) 411
BssMI GATC 3 cut(s) 73, 343, 567
Bst4CI ACNGT 4 cut(s) 58, 64, 206, 398
BstC8I GCNNGC 1 cut(s) 586
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 3 cut(s) 76, 346, 570
BstMBI GATC 3 cut(s) 73, 343, 567
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 462, 557
BstV1I GCAGC 2 cut(s) 166, 499
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 394
BveI ACCTGC 2 cut(s) 78, 299
Cac8I GCNNGC 1 cut(s) 586
CciI TCATGA 1 cut(s) 364
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 3 cut(s) 91, 243, 467
CspAI ACCGGT 1 cut(s) 411
CviAII CATG 2 cut(s) 365, 639
CviJI RGCY 2 cut(s) 312, 512
CviKI_1 RGCY 2 cut(s) 312, 512
CviQI GTAC 3 cut(s) 91, 243, 467
DdeI CTNAG 1 cut(s) 339
DpnI GATC 3 cut(s) 75, 345, 569
DpnII GATC 3 cut(s) 73, 343, 567
FaeI CATG 2 cut(s) 368, 642
FalI AAGNNNNNCTT 1 cut(s) 36
FaqI GGGAC 1 cut(s) 409
FatI CATG 2 cut(s) 364, 638
Fnu4HI GCNGC 2 cut(s) 180, 513
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 180, 513
FspBI CTAG 2 cut(s) 212, 525
GluI GCNGC 2 cut(s) 180, 513
HaeIII GGCC 1 cut(s) 312
HapII CCGG 5 cut(s) 412, 463, 509, 516, 559
Hin1II CATG 2 cut(s) 368, 642
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 4 cut(s) 5, 145, 284, 482
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 5 cut(s) 412, 463, 509, 516, 559
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 229, 263
Hpy188III TCNNGA 3 cut(s) 26, 77, 365
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 4 cut(s) 58, 64, 206, 398
HpyCH4V TGCA 1 cut(s) 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 339
Hsp92II CATG 2 cut(s) 368, 642
KpnI GGTACC 1 cut(s) 246
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 3 cut(s) 73, 343, 567
LmnI GCTCC 1 cut(s) 84
Lsp1109I GCAGC 2 cut(s) 166, 499
LweI GCATC 1 cut(s) 365
MaeI CTAG 2 cut(s) 212, 525
MaeIII GTNAC 2 cut(s) 58, 520
MalI GATC 3 cut(s) 75, 345, 569
MboI GATC 3 cut(s) 73, 343, 567
MboII GAAGA 3 cut(s) 138, 574, 577
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 211, 586
MluCI AATT 3 cut(s) 223, 304, 328
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 4 cut(s) 75, 166, 265, 565
MseI TTAA 3 cut(s) 66, 216, 327
MslI CAYNNNNRTG 2 cut(s) 369, 502
MspI CCGG 5 cut(s) 412, 463, 509, 516, 559
MspR9I CCNGG 2 cut(s) 464, 559
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 2 cut(s) 464, 559
NdeII GATC 3 cut(s) 73, 343, 567
NlaIII CATG 2 cut(s) 368, 642
NlaIV GGNNCC 2 cut(s) 244, 313
NmuCI GTSAC 2 cut(s) 58, 520
PagI TCATGA 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 4 cut(s) 5, 145, 284, 482
PfoI TCCNGGA 1 cut(s) 557
PinAI ACCGGT 1 cut(s) 411
PkrI GCNGC 2 cut(s) 181, 514
PspN4I GGNNCC 2 cut(s) 244, 313
PspPI GGNCC 1 cut(s) 311
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 3 cut(s) 92, 244, 468
RsaNI GTAC 3 cut(s) 91, 243, 467
RseI CAYNNNNRTG 2 cut(s) 369, 502
SaqAI TTAA 3 cut(s) 66, 216, 327
SatI GCNGC 2 cut(s) 180, 513
Sau3AI GATC 3 cut(s) 73, 343, 567
Sau96I GGNCC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 464, 559
SduI GDGCHC 2 cut(s) 211, 586
SetI ASST 5 cut(s) 92, 248, 276, 293, 494
SfaNI GCATC 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 369, 502
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SpeI ACTAGT 1 cut(s) 524
Sse9I AATT 3 cut(s) 223, 304, 328
SspMI CTAG 2 cut(s) 212, 525
StyD4I CCNGG 2 cut(s) 462, 557
TaaI ACNGT 4 cut(s) 58, 64, 206, 398
TaqII GACCGA 1 cut(s) 475
TasI AATT 3 cut(s) 223, 304, 328
TfiI GAWTC 4 cut(s) 5, 145, 284, 482
Tru1I TTAA 3 cut(s) 66, 216, 327
Tru9I TTAA 3 cut(s) 66, 216, 327
TscAI CASTG 1 cut(s) 401
TseFI GTSAC 2 cut(s) 58, 520
TseI GCWGC 2 cut(s) 179, 512
Tsp45I GTSAC 2 cut(s) 58, 520
TspDTI ATGAA 3 cut(s) 353, 539, 612
TspRI CASTG 1 cut(s) 401
XspI CTAG 2 cut(s) 212, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.