RLG00000029040

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000673
Physical Location & Seq
Forward (+)
31824593 .. 31826085
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029040

Sequence Viewer

Length: 1347 bp
ATGAATGTACAAGGTAGAGAAAACATGATCTCTGAGTCGAGAGTCAGGGTTGATCATAGACCCAGAAGATGCAGCAGTAGTACCAGGGCTTGCTATGTGTGCGGCAAGGTTGGCCATATAGCTGTGGAATGCAATGAATCAAAAAAATTAGGGACTTATGTGAACCGGCGTTGCTACAATTGCACGCGGAATTGCAGCAACAAATTAGGCTCTGCAGGTGCAACTGGTAGTAGCAGTACTAGTACTGGGATATTTAGAGGTAGAGATATTCCAACTGATATCTTTACCCTAGTCACTGAACGTCTCCCAGTTGATGATGTTATTCACTTGGGGGTTGTATGCAAGACTTGGCAGCAAGCTATTCGAGTTCAACCTCGTTGTCGTGCATGTATGCCCTGGGTAATGCACTCTTTGACATCGACTGATAAGGCATCCTCTTGCAAATTCAAGATTTCCGACTTTTGGAGAAATCGAACTTACCCTCTTGATAGAATCCTAAACAAAGATATGAAAGAATTATGTCATAATTATCATGGCAAATTCAGAGTCTGTGATTCAAAATATGGTTGGTTGTTGCTCTTCTTCGAACACAGGTCTTCCTTCACATACCCACGCAAAGTCCAGATCTTGTTTTACAATCCTTTCCGTAATGTGACTATCAAATTGCCTTCATTATATTTGGCGGGGGATGAACATGTAGGGATAGCAAAGTTCATGACAACTCCATCTGGCCGTCCTCCTACTTGCGATATCGTTTTCATGAGTCATCGTGAATATAGATATTATCAAGCAACATGTGATTACATGTTGTATACATGTAATGAAGATAGACGCTGGAGTAAGTATAAAATTGATGCATTGCAAGCGTACAGACAGTGTAACGTTGCTTATGCAGATGAAACTTTTTACTGTGCTTTTCATTCTTTCGACTTTGTAGTGATGGGTACCTTCAGCGTTGCACTCCAACGTTTTACCATAGATCCTTCCCTTTTTTTAGGACTTGATGGTTTTGATCACCTGTACCTTGTTGAGTTTGGTGGAGATCTCTGTTCCATTCCTATTAAGCATGGTGTTTGTCATGTTTACCAGCTTGATCGGTCACGAAAAGTATGGACTCGAATTAAAAGCTTGGGAAATCGGGTTTTGATTTTGTGCGACCGCTCGTCAAGTATTGTAGTTCCTGCCGTGGGAGAAGCTGAGGAATATGCAGACATGATATTTTTGTATGGAAACGACCAGCGACTGGCCTTTATTAGTGACACTGAAGGCTCTTGGAGACTTAACAAACAACATGATTTAGGAGATTCCTTGAGAGACTGTATTTGTATTCAGCCGCCTAACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

449

Amino Acids

51.62

Weight (kDa)

8.88

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 179 - 394 4e-17 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 206
Acc36I ACCTGC 1 cut(s) 206
Acc65I GGTACC 1 cut(s) 944
AccB1I GGYRCC 1 cut(s) 944
AccB7I CCANNNNNTGG 1 cut(s) 1243
AccBSI CCGCTC 1 cut(s) 1161
AccI GTMKAC 1 cut(s) 812
AccII CGCG 1 cut(s) 187
AciI CCGC 5 cut(s) 102, 187, 683, 1159, 1334
AclI AACGTT 2 cut(s) 882, 967
AclWI GGATC 1 cut(s) 974
AcoI YGGCCR 2 cut(s) 112, 730
AcsI RAATTY 2 cut(s) 443, 539
AcuI CTGAAG 2 cut(s) 934, 1284
AfaI GTAC 7 cut(s) 9, 82, 238, 244, 869, 946, 1022
AfiI CCNNNNNNNGG 3 cut(s) 462, 1187, 1243
AflIII ACRYGT 4 cut(s) 694, 794, 804, 815
AgsI TTSAA 3 cut(s) 371, 448, 558
AhdI GACNNNNNGTC 1 cut(s) 1162
AhlI ACTAGT 1 cut(s) 239
AjnI CCWGG 2 cut(s) 83, 395
AluBI AGCT 5 cut(s) 122, 359, 1090, 1128, 1196
AluI AGCT 5 cut(s) 122, 359, 1090, 1128, 1196
Alw26I GTCTC 3 cut(s) 308, 1270, 1308
AlwI GGATC 1 cut(s) 974
AlwNI CAGNNNCTG 2 cut(s) 549, 1243
AoxI GGCC 3 cut(s) 112, 730, 1245
ApeKI GCWGC 3 cut(s) 72, 195, 352
ApoI RAATTY 2 cut(s) 443, 539
ArsI GACNNNNNNTTYG 2 cut(s) 531, 563
Asp718I GGTACC 1 cut(s) 944
AsuHPI GGTGA 1 cut(s) 1007
AsuII TTCGAA 1 cut(s) 585
BalI TGGCCA 1 cut(s) 114
BanI GGYRCC 1 cut(s) 944
BbsI GAAGAC 1 cut(s) 588
BbvCI CCTCAGC 1 cut(s) 1197
BbvI GCAGC 3 cut(s) 84, 207, 364
BccI CCATC 3 cut(s) 733, 934, 998
BceAI ACGGC 2 cut(s) 717, 1169
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 2 cut(s) 85, 397
BclI TGATCA 2 cut(s) 52, 1012
BcoDI GTCTC 3 cut(s) 308, 1270, 1308
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 2 cut(s) 240, 290
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 206
BglII AGATCT 2 cut(s) 624, 1042
BisI GCNGC 5 cut(s) 73, 103, 196, 353, 1334
BlsI GCNGC 5 cut(s) 74, 104, 197, 354, 1335
BmcAI AGTACT 2 cut(s) 238, 244
Bme1390I CCNGG 2 cut(s) 85, 397
BmeRI GACNNNNNGTC 1 cut(s) 1162
BmiI GGNNCC 1 cut(s) 946
BmrFI CCNGG 2 cut(s) 85, 397
BmrI ACTGGG 2 cut(s) 255, 302
BmsI GCATC 3 cut(s) 59, 440, 844
BmuI ACTGGG 2 cut(s) 255, 302
BpiI GAAGAC 1 cut(s) 588
BpmI CTGGAG 1 cut(s) 856
Bpu10I CCTNAGC 1 cut(s) 1197
Bpu14I TTCGAA 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 1330
BsaJI CCNNGG 4 cut(s) 84, 395, 396, 1185
Bsc4I CCNNNNNNNGG 3 cut(s) 462, 1187, 1243
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 4 cut(s) 229, 250, 308, 1248
Bse3DI GCAATG 2 cut(s) 139, 857
BseBI CCWGG 2 cut(s) 85, 397
BseDI CCNNGG 4 cut(s) 84, 395, 396, 1185
BseGI GGATG 2 cut(s) 431, 694
BseLI CCNNNNNNNGG 3 cut(s) 462, 1187, 1243
BseMI GCAATG 2 cut(s) 139, 857
BseMII CTCAG 2 cut(s) 24, 1188
BseNI ACTGG 4 cut(s) 229, 250, 308, 1248
BseXI GCAGC 3 cut(s) 84, 207, 364
Bsh1236I CGCG 1 cut(s) 187
Bsh1285I CGRYCG 1 cut(s) 1159
BshFI GGCC 3 cut(s) 114, 732, 1247
BshNI GGYRCC 1 cut(s) 944
BsiEI CGRYCG 1 cut(s) 1159
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 3 cut(s) 462, 1187, 1243
BsmAI GTCTC 3 cut(s) 308, 1270, 1308
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 3 cut(s) 114, 732, 1247
Bsp119I TTCGAA 1 cut(s) 585
Bsp1407I TGTACA 1 cut(s) 7
Bsp143I GATC 7 cut(s) 27, 52, 624, 979, 1012, 1042, 1093
BspACI CCGC 5 cut(s) 102, 187, 683, 1159, 1334
BspANI GGCC 3 cut(s) 114, 732, 1247
BspCNI CTCAG 2 cut(s) 25, 1189
BspFNI CGCG 1 cut(s) 187
BspHI TCATGA 2 cut(s) 714, 759
BspLI GGNNCC 1 cut(s) 946
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 974
BspQI GCTCTTC 1 cut(s) 584
BspT104I TTCGAA 1 cut(s) 585
BspT107I GGYRCC 1 cut(s) 944
BsrBI CCGCTC 1 cut(s) 1161
BsrDI GCAATG 2 cut(s) 139, 857
BsrFI RCCGGY 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 7
BsrI ACTGG 4 cut(s) 229, 250, 308, 1248
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 4 cut(s) 84, 395, 396, 1185
BssMI GATC 7 cut(s) 27, 52, 624, 979, 1012, 1042, 1093
BssNAI GTATAC 1 cut(s) 813
Bst1107I GTATAC 1 cut(s) 813
Bst2UI CCWGG 2 cut(s) 85, 397
Bst4CI ACNGT 3 cut(s) 876, 911, 1319
Bst6I CTCTTC 1 cut(s) 584
BstAUI TGTACA 1 cut(s) 7
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 4 cut(s) 91, 185, 357, 864
BstDEI CTNAG 2 cut(s) 33, 1197
BstDSI CCRYGG 1 cut(s) 1185
BstF5I GGATG 2 cut(s) 431, 694
BstFNI CGCG 1 cut(s) 187
BstKTI GATC 7 cut(s) 30, 55, 627, 982, 1015, 1045, 1096
BstMAI GTCTC 3 cut(s) 308, 1270, 1308
BstMBI GATC 7 cut(s) 27, 52, 624, 979, 1012, 1042, 1093
BstMCI CGRYCG 1 cut(s) 1159
BstMWI GCNNNNNNNGC 4 cut(s) 99, 111, 180, 863
BstNI CCWGG 2 cut(s) 85, 397
BstNSI RCATGY 5 cut(s) 390, 698, 798, 808, 819
BstSCI CCNGG 2 cut(s) 83, 395
BstSFI CTRYAG 1 cut(s) 213
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 84, 207, 364
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 3 cut(s) 624, 979, 1042
BstYI RGATCY 3 cut(s) 624, 979, 1042
BstZ17I GTATAC 1 cut(s) 813
BsuRI GGCC 3 cut(s) 114, 732, 1247
BtgI CCRYGG 1 cut(s) 1185
BtsCI GGATG 2 cut(s) 431, 694
BtsIMutI CAGTG 3 cut(s) 294, 881, 1260
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 4 cut(s) 91, 185, 357, 864
CaiI CAGNNNCTG 2 cut(s) 549, 1243
CciI TCATGA 2 cut(s) 714, 759
Cfr10I RCCGGY 1 cut(s) 165
CseI GACGC 1 cut(s) 840
Csp6I GTAC 7 cut(s) 8, 81, 237, 243, 868, 945, 1021
CviQI GTAC 7 cut(s) 8, 81, 237, 243, 868, 945, 1021
DdeI CTNAG 2 cut(s) 33, 1197
DpnI GATC 7 cut(s) 29, 54, 626, 981, 1014, 1044, 1095
DpnII GATC 7 cut(s) 27, 52, 624, 979, 1012, 1042, 1093
DriI GACNNNNNGTC 1 cut(s) 1162
EaeI YGGCCR 2 cut(s) 112, 730
Eam1104I CTCTTC 1 cut(s) 584
Eam1105I GACNNNNNGTC 1 cut(s) 1162
EarI CTCTTC 1 cut(s) 584
Eco32I GATATC 2 cut(s) 280, 751
Eco57I CTGAAG 2 cut(s) 934, 1284
EcoRII CCWGG 2 cut(s) 83, 395
EcoRV GATATC 2 cut(s) 280, 751
EcoT22I ATGCAT 1 cut(s) 859
Esp3I CGTCTC 1 cut(s) 308
FaqI GGGAC 1 cut(s) 166
FauI CCCGC 1 cut(s) 676
FbaI TGATCA 2 cut(s) 52, 1012
FblI GTMKAC 1 cut(s) 812
Fnu4HI GCNGC 5 cut(s) 73, 103, 196, 353, 1334
FokI GGATG 2 cut(s) 418, 701
Fsp4HI GCNGC 5 cut(s) 73, 103, 196, 353, 1334
FspBI CTAG 2 cut(s) 240, 290
GluI GCNGC 5 cut(s) 73, 103, 196, 353, 1334
GsuI CTGGAG 1 cut(s) 856
HaeIII GGCC 3 cut(s) 114, 732, 1247
HapII CCGG 1 cut(s) 166
HgaI GACGC 1 cut(s) 840
HindIII AAGCTT 1 cut(s) 1126
HinfI GANTC 9 cut(s) 35, 42, 137, 492, 546, 554, 763, 1114, 1304
HpaII CCGG 1 cut(s) 166
HphI GGTGA 1 cut(s) 1007
Hpy166II GTNNAC 3 cut(s) 163, 813, 1084
Hpy188I TCNGA 3 cut(s) 34, 457, 545
Hpy188III TCNNGA 8 cut(s) 39, 448, 485, 622, 715, 760, 770, 1101
Hpy8I GTNNAC 3 cut(s) 163, 813, 1084
HpyAV CCTTC 5 cut(s) 610, 678, 958, 993, 1259
HpyCH4III ACNGT 3 cut(s) 876, 911, 1319
HpyCH4IV ACGT 3 cut(s) 301, 882, 967
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 111, 180, 863
HpyF3I CTNAG 2 cut(s) 33, 1197
HpySE526I ACGT 3 cut(s) 301, 882, 967
KpnI GGTACC 1 cut(s) 948
Ksp22I TGATCA 2 cut(s) 52, 1012
Kzo9I GATC 7 cut(s) 27, 52, 624, 979, 1012, 1042, 1093
LguI GCTCTTC 1 cut(s) 584
Lsp1109I GCAGC 3 cut(s) 84, 207, 364
LweI GCATC 3 cut(s) 59, 440, 844
MaeI CTAG 2 cut(s) 240, 290
MaeII ACGT 3 cut(s) 301, 882, 967
MaeIII GTNAC 5 cut(s) 292, 652, 878, 1098, 1256
MalI GATC 7 cut(s) 29, 54, 626, 981, 1014, 1044, 1095
MbiI CCGCTC 1 cut(s) 1161
MboI GATC 7 cut(s) 27, 52, 624, 979, 1012, 1042, 1093
MboII GAAGA 5 cut(s) 78, 571, 574, 588, 836
MfeI CAATTG 1 cut(s) 178
MflI RGATCY 3 cut(s) 624, 979, 1042
MlsI TGGCCA 1 cut(s) 114
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 5 cut(s) 44, 51, 555, 772, 1108
MmeI TCCRAC 3 cut(s) 296, 480, 988
MnlI CCTC 6 cut(s) 251, 384, 445, 492, 747, 1192
Mox20I TGGCCA 1 cut(s) 114
Mph1103I ATGCAT 1 cut(s) 859
MscI TGGCCA 1 cut(s) 114
MseI TTAA 3 cut(s) 1062, 1122, 1281
Msp20I TGGCCA 1 cut(s) 114
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 2 cut(s) 85, 397
MunI CAATTG 1 cut(s) 178
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 2 cut(s) 85, 397
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 4 cut(s) 99, 111, 180, 863
NdeII GATC 7 cut(s) 27, 52, 624, 979, 1012, 1042, 1093
NlaIV GGNNCC 1 cut(s) 946
NmuCI GTSAC 4 cut(s) 292, 652, 1098, 1256
NsiI ATGCAT 1 cut(s) 859
NspI RCATGY 5 cut(s) 390, 698, 798, 808, 819
NspV TTCGAA 1 cut(s) 585
PagI TCATGA 2 cut(s) 714, 759
PaqCI CACCTGC 1 cut(s) 206
PasI CCCWGGG 1 cut(s) 396
PciI ACATGT 4 cut(s) 694, 794, 804, 815
PciSI GCTCTTC 1 cut(s) 584
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 4 cut(s) 137, 492, 554, 1304
PflMI CCANNNNNTGG 1 cut(s) 1243
PkrI GCNGC 5 cut(s) 74, 104, 197, 354, 1335
PleI GAGTC 5 cut(s) 43, 50, 554, 771, 1108
PpsI GAGTC 5 cut(s) 43, 50, 554, 771, 1108
PscI ACATGT 4 cut(s) 694, 794, 804, 815
Psp1406I AACGTT 2 cut(s) 882, 967
Psp6I CCWGG 2 cut(s) 83, 395
PspGI CCWGG 2 cut(s) 83, 395
PspN4I GGNNCC 1 cut(s) 946
PstI CTGCAG 1 cut(s) 217
PstNI CAGNNNCTG 2 cut(s) 549, 1243
PsuI RGATCY 3 cut(s) 624, 979, 1042
RsaI GTAC 7 cut(s) 9, 82, 238, 244, 869, 946, 1022
RsaNI GTAC 7 cut(s) 8, 81, 237, 243, 868, 945, 1021
SapI GCTCTTC 1 cut(s) 584
SaqAI TTAA 3 cut(s) 1062, 1122, 1281
SatI GCNGC 5 cut(s) 73, 103, 196, 353, 1334
Sau3AI GATC 7 cut(s) 27, 52, 624, 979, 1012, 1042, 1093
ScaI AGTACT 2 cut(s) 238, 244
SchI GAGTC 5 cut(s) 44, 51, 555, 772, 1108
ScrFI CCNGG 2 cut(s) 85, 397
SfaNI GCATC 3 cut(s) 59, 440, 844
SfcI CTRYAG 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 585
SmlI CTYRAG 1 cut(s) 1309
SmoI CTYRAG 1 cut(s) 1309
SpeI ACTAGT 1 cut(s) 239
SsiI CCGC 5 cut(s) 102, 187, 683, 1159, 1334
SspMI CTAG 2 cut(s) 240, 290
StyD4I CCNGG 2 cut(s) 83, 395
TaaI ACNGT 3 cut(s) 876, 911, 1319
TaiI ACGT 3 cut(s) 304, 885, 970
TaqI TCGA 7 cut(s) 38, 364, 419, 472, 585, 927, 1117
TaqII GACCGA 1 cut(s) 1086
TatI WGTACW 3 cut(s) 7, 236, 242
TauI GCSGC 2 cut(s) 105, 1336
TfiI GAWTC 4 cut(s) 137, 492, 554, 1304
Tru1I TTAA 3 cut(s) 1062, 1122, 1281
Tru9I TTAA 3 cut(s) 1062, 1122, 1281
TscAI CASTG 3 cut(s) 301, 881, 1267
TseFI GTSAC 4 cut(s) 292, 652, 1098, 1256
TseI GCWGC 3 cut(s) 72, 195, 352
Tsp45I GTSAC 4 cut(s) 292, 652, 1098, 1256
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 3 cut(s) 301, 881, 1267
Van91I CCANNNNNTGG 1 cut(s) 1243
XapI RAATTY 2 cut(s) 443, 539
XceI RCATGY 5 cut(s) 390, 698, 798, 808, 819
XmiI GTMKAC 1 cut(s) 812
XspI CTAG 2 cut(s) 240, 290
ZrmI AGTACT 2 cut(s) 238, 244
Zsp2I ATGCAT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.