Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000673

Physical Location & Seq

Genomic Coordinates Forward (+)

45807961 .. 45809158

Gene Structure 1198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025447

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCAAACACTAATGATCGTTCGTGGTCCGATATGCCAATTGAAATCTTAACCTCAGTTGCTGAACGTCTCTCACCTACACCAATCACTGCTGATATCAATCTTTTTCACTTTGGTTCCGTCTGCAAAACTTGGCGACAAGCTAGCTTTCGTGCAGGAGTTCGACGTCGTTCAGACGGGATTTCGATAGTATTGCATGTCTTCACATTTAGAAGACGGAGCTTTCTATCACGTCTTAAGAAAGCCATTGGACAAGCTGATGATGGTGAACAATGTGATCCATTCGTTATCTCCTCCTCCTCCTCTTCCTTAAGAAAGAAGGAGAATGATGATCTCTACTTAGTTGAGGCTGATGGGGATCTCTTATTAGCAATTTGTTCTATTGATGACACTCCCAGTTATTGTCACATATACCGGTTGGATCGATCACGTAAAAAATGGAATCGAATTAAGAACTTGGGAAATCGAGTAATGATTTTGTCTAGCGATGGTGTTGGATCGTTTGTAGTTCCTGCGGTGCGAGATGCTAAAGACTTTGCAAATACGATCTTTATTTATCGAGACTCAAGTAATGCTCATGCTATCTGCGAAAGTACTGAAGCCACTTGGATATTTGACAAAATCCATCATGTAAATCCTTCTGAAGCAGGCACTACTCTCATTGAACCCCCTGACTTATGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

229

Amino Acids

25.77

Weight (kDa)

7.05

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	67 - 186	4.2e-09	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26661 FvH4_2g26662 FvH4_3g21700 FvH4_3g21711 FvH4_3g21801 FvH4_4g17781 FvH4_4g20671 FvH4_5g08112 FvH4_5g19010
pyrus_communis	pycom11g20050 pycom12g20870
rosa_chinensis	RchiOBHm_Chr3g0473991 RchiOBHm_Chr6g0295501
rosa_laevigata	RLG00000011844 RLG00000011846 RLG00000011847 RLG00000023960 RLG00000025447 RLG00000025455 RLG00000027507 RLG00000029040 RLG00000033754 RLG00000033763 RLG00000033780 RLG00000033784
rosa_multiflora	Rmu_co8461177.1_g000001 Rmu_sc0000006.1_g000007 Rmu_sc0000475.1_g000005 Rmu_sc0001331.1_g000009 Rmu_sc0001576.1_g000022 Rmu_sc0002271.1_g000033 Rmu_sc0002414.1_g000009 Rmu_sc0002521.1_g000001 Rmu_sc0003170.1_g000006 Rmu_sc0003854.1_g000002 Rmu_sc0004190.1_g000002 Rmu_sc0005137.1_g000016 Rmu_sc0006633.1_g000002 Rmu_sc0012290.1_g000003 Rmu_sc0022254.1_g000001 Rmu_sc0027615.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043510 Rroxscaffold_1G00043580 Rroxscaffold_1G00043780 Rroxscaffold_3G00266190 Rroxscaffold_4G00311360 Rroxscaffold_5G00368090 Rroxscaffold_6G00407580 Rroxscaffold_6G00425070 Rroxscaffold_6G00425130 Rroxscaffold_7G00173050
rosa_rugosa	Rorug02G0654500 Rorug04G0209000
rosa_samantha	Rh1AG322000 Rh1BG144900 Rh2CG355900 Rh3BG060900 Rh3BG216400 Rh3DG212200 Rh4CG284500 Rh5AG254200 Rh5BG255100 Rh5BG256200 Rh5CG287800 Rh5CG289200 Rh5CG289300 Rh6AG364700 Rh6BG366800 Rh6DG360500 Rh7AG097700 Rh7BG098700 Rh7CG099600
rosa_wichuraiana	Rw3G004540 Rw5G023530 Rw6G031400 Rw6G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	169
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	4 cut(s)	272, 366, 429, 505
AcuI	CTGAAG	2 cut(s)	618, 663
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	1 cut(s)	595
AflII	CTTAAG	2 cut(s)	236, 310
AgeI	ACCGGT	1 cut(s)	414
AgsI	TTSAA	2 cut(s)	44, 665
AjiI	CACGTC	1 cut(s)	233
AluBI	AGCT	4 cut(s)	143, 147, 222, 257
AluI	AGCT	4 cut(s)	143, 147, 222, 257
Alw26I	GTCTC	2 cut(s)	74, 555
AlwI	GGATC	4 cut(s)	272, 366, 429, 505
AlwNI	CAGNNNCTG	1 cut(s)	62
AsiGI	ACCGGT	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	66, 278
AsuNHI	GCTAGC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	27
BbsI	GAAGAC	2 cut(s)	193, 220
BccI	CCATC	4 cut(s)	257, 347, 482, 633
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BcoDI	GTCTC	2 cut(s)	74, 555
BfaI	CTAG	2 cut(s)	144, 483
BfrI	CTTAAG	2 cut(s)	236, 310
BmcAI	AGTACT	1 cut(s)	595
Bme18I	GGWCC	1 cut(s)	27
BmgBI	CACGTC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	514
BmtI	GCTAGC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	390
BpiI	GAAGAC	2 cut(s)	193, 220
BpuEI	CTTGAG	1 cut(s)	550
Bsa29I	ATCGAT	1 cut(s)	424
BsaAI	YACGTR	1 cut(s)	431
BsaBI	GATNNNNATC	2 cut(s)	99, 357
BsaHI	GRCGYC	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	414
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	1 cut(s)	396
Bse8I	GATNNNNATC	2 cut(s)	99, 357
BseCI	ATCGAT	1 cut(s)	424
BseJI	GATNNNNATC	2 cut(s)	99, 357
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	4 cut(s)	283, 286, 289, 292
BsgI	GTGCAG	1 cut(s)	174
BshTI	ACCGGT	1 cut(s)	414
BshVI	ATCGAT	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	415
BsmAI	GTCTC	2 cut(s)	74, 555
BsmBI	CGTCTC	1 cut(s)	74
Bsp143I	GATC	8 cut(s)	16, 277, 331, 358, 421, 425, 497, 546
BspACI	CCGC	1 cut(s)	515
BspCNI	CTCAG	1 cut(s)	68
BspDI	ATCGAT	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	118
BspOI	GCTAGC	1 cut(s)	147
BspPI	GGATC	4 cut(s)	272, 366, 429, 505
BspTI	CTTAAG	2 cut(s)	236, 310
BsrFI	RCCGGY	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	414
BssMI	GATC	8 cut(s)	16, 277, 331, 358, 421, 425, 497, 546
BssNI	GRCGYC	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	166
BstAFI	CTTAAG	2 cut(s)	236, 310
BstBAI	YACGTR	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	145, 649
BstDEI	CTNAG	2 cut(s)	55, 340
BstKTI	GATC	8 cut(s)	19, 280, 334, 361, 424, 428, 500, 549
BstMAI	GTCTC	2 cut(s)	74, 555
BstMBI	GATC	8 cut(s)	16, 277, 331, 358, 421, 425, 497, 546
BstNSI	RCATGY	1 cut(s)	200
BstV2I	GAAGAC	2 cut(s)	193, 220
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	424
BsuTUI	ATCGAT	1 cut(s)	424
BtgZI	GCGATG	1 cut(s)	501
BtrI	CACGTC	1 cut(s)	233
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	145, 649
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	594
CspAI	ACCGGT	1 cut(s)	414
CviAII	CATG	3 cut(s)	197, 578, 629
CviJI	RGCY	7 cut(s)	143, 147, 222, 245, 257, 350, 602
CviKI_1	RGCY	7 cut(s)	143, 147, 222, 245, 257, 350, 602
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	2 cut(s)	55, 340
DpnI	GATC	8 cut(s)	18, 279, 333, 360, 423, 427, 499, 548
DpnII	GATC	8 cut(s)	16, 277, 331, 358, 421, 425, 497, 546
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	618, 663
EcoRV	GATATC	1 cut(s)	97
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	3 cut(s)	200, 581, 632
FaiI	YATR	7 cut(s)	35, 198, 410, 412, 579, 630, 679
FatI	CATG	3 cut(s)	196, 577, 628
FspBI	CTAG	2 cut(s)	144, 483
HapII	CCGG	1 cut(s)	415
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	3 cut(s)	200, 581, 632
HinfI	GANTC	2 cut(s)	442, 563
HpaII	CCGG	1 cut(s)	415
HphI	GGTGA	2 cut(s)	66, 278
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	3 cut(s)	31, 175, 643
Hpy188III	TCNNGA	1 cut(s)	560
Hpy8I	GTNNAC	1 cut(s)	269
Hpy99I	CGWCG	2 cut(s)	168, 171
HpyAV	CCTTC	2 cut(s)	313, 648
HpyCH4IV	ACGT	4 cut(s)	67, 166, 232, 430
HpyCH4V	TGCA	4 cut(s)	126, 155, 196, 539
HpyF3I	CTNAG	2 cut(s)	55, 340
HpySE526I	ACGT	4 cut(s)	67, 166, 232, 430
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	3 cut(s)	200, 581, 632
Kzo9I	GATC	8 cut(s)	16, 277, 331, 358, 421, 425, 497, 546
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	5 cut(s)	141, 409, 428, 525, 633
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	2 cut(s)	144, 483
MaeII	ACGT	4 cut(s)	67, 166, 232, 430
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	8 cut(s)	18, 279, 333, 360, 423, 427, 499, 548
MboI	GATC	8 cut(s)	16, 277, 331, 358, 421, 425, 497, 546
MboII	GAAGA	3 cut(s)	193, 225, 297
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	3 cut(s)	39, 372, 447
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	2 cut(s)	399, 475
MnlI	CCTC	6 cut(s)	64, 304, 307, 310, 313, 340
MseI	TTAA	4 cut(s)	50, 237, 311, 450
MspCI	CTTAAG	2 cut(s)	236, 310
MspI	CCGG	1 cut(s)	415
MunI	CAATTG	1 cut(s)	39
NdeII	GATC	8 cut(s)	16, 277, 331, 358, 421, 425, 497, 546
NheI	GCTAGC	1 cut(s)	143
NlaIII	CATG	3 cut(s)	200, 581, 632
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	404
NspI	RCATGY	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	442
PinAI	ACCGGT	1 cut(s)	414
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
Ppu21I	YACGTR	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
SaqAI	TTAA	4 cut(s)	50, 237, 311, 450
Sau3AI	GATC	8 cut(s)	16, 277, 331, 358, 421, 425, 497, 546
Sau96I	GGNCC	1 cut(s)	27
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	1 cut(s)	557
SfaNI	GCATC	1 cut(s)	514
SinI	GGWCC	1 cut(s)	27
SmlI	CTYRAG	3 cut(s)	236, 310, 565
SmoI	CTYRAG	3 cut(s)	236, 310, 565
Sse9I	AATT	3 cut(s)	39, 372, 447
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	2 cut(s)	144, 483
TaiI	ACGT	4 cut(s)	70, 169, 235, 433
TaqI	TCGA	6 cut(s)	163, 185, 424, 445, 466, 559
TasI	AATT	3 cut(s)	39, 372, 447
TatI	WGTACW	1 cut(s)	593
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	4 cut(s)	50, 237, 311, 450
Tru9I	TTAA	4 cut(s)	50, 237, 311, 450
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	404
TspGWI	ACGGA	2 cut(s)	109, 232
TspRI	CASTG	1 cut(s)	94
Vha464I	CTTAAG	2 cut(s)	236, 310
VpaK11BI	GGWCC	1 cut(s)	27
XceI	RCATGY	1 cut(s)	200
XspI	CTAG	2 cut(s)	144, 483
ZraI	GACGTC	1 cut(s)	167
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.