Rh6BG366800

F-box kelch-repeat protein At1g57790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000673
Physical Location & Seq
Reverse (-)
59605465 .. 59606100
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG366800.1

Sequence Viewer

Length: 636 bp
ATGCCAGGCCTGAGTTTATCCAGTCCATATCATCAAGACGAACACGGCCGGGTAATAAGCTTCTTTGATATATCAATCCAGAAAATCCGCCGTATAAAGCTTAAGAGTCGAGAAGAATTAAAAACATTCTGGCAACTTGATTCAAAATATGGTTGGATCATTTTGCAAAAAGGGTGCAAATCCAAACCTGCACTCGTCTTGTATAATCCTTTAACCAAAGAGATTATACAACTGCCACAGTTGAACCTAAGCACCAATAGTGAATGTATAGCAACATTCACAAGCCCTCCGACTTCTGCTGACTGTGTCATCTTTGCCTTCTACCAAGTAGAAAGAGGAGAAGCTTGCATTGTAGGCACATGTAAGCTGGGAGATAATATATGGAGATTTCGAAAAATAACAGGTTGGAAGGGCGCGAACTACGTTGCGAATGTGACCTATTTCAATGGAATTCTCTGTTTTGTTATTAAAAAATGGTCATCTGATTGGTCGGTAGAGTTGGGTACCTTGGATGTATCGGTTCAAGACTGGGTCATGGACTATGCTTCCATAACAGTAGCACAAGAACAGTATCGGTATTGGGAGTGGTATTGGCTGGTTGAGTCTGATGGGATAGCCATGGGGATGTTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

211

Amino Acids

24.35

Weight (kDa)

7.54

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 21 - 204 5.1e-12 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
Acc65I GGTACC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 503
AccII CGCG 1 cut(s) 416
AciI CCGC 1 cut(s) 88
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 450
AfaI GTAC 1 cut(s) 505
AflII CTTAAG 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 4 cut(s) 144, 244, 445, 524
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 4 cut(s) 60, 100, 344, 367
AluI AGCT 4 cut(s) 60, 100, 344, 367
AlwI GGATC 1 cut(s) 164
AoxI GGCC 2 cut(s) 7, 46
ApoI RAATTY 1 cut(s) 450
Asp718I GGTACC 1 cut(s) 503
AspLEI GCGC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 50
AsuII TTCGAA 1 cut(s) 391
BanI GGYRCC 1 cut(s) 503
BccI CCATC 1 cut(s) 602
BceAI ACGGC 2 cut(s) 61, 75
BciT130I CCWGG 1 cut(s) 6
BcnI CCSGG 1 cut(s) 50
BfrI CTTAAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 196
Bme1390I CCNGG 2 cut(s) 6, 50
BmiI GGNNCC 1 cut(s) 505
BmrFI CCNGG 2 cut(s) 6, 50
BmrI ACTGGG 1 cut(s) 538
BmuI ACTGGG 1 cut(s) 538
Bpu10I CCTNAGC 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 391
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 507, 618
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bse1I ACTGG 2 cut(s) 21, 533
BseBI CCWGG 1 cut(s) 6
BseDI CCNNGG 2 cut(s) 507, 618
BseGI GGATG 2 cut(s) 517, 630
BseNI ACTGG 2 cut(s) 21, 533
BseRI GAGGAG 1 cut(s) 351
BseX3I CGGCCG 1 cut(s) 46
BseYI CCCAGC 1 cut(s) 367
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 416
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 2 cut(s) 9, 48
BshNI GGYRCC 1 cut(s) 503
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 1 cut(s) 49
BsnI GGCC 2 cut(s) 9, 48
Bsp119I TTCGAA 1 cut(s) 391
Bsp143I GATC 1 cut(s) 156
Bsp19I CCATGG 1 cut(s) 618
BspACI CCGC 1 cut(s) 88
BspANI GGCC 2 cut(s) 9, 48
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 1 cut(s) 505
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 1 cut(s) 164
BspT104I TTCGAA 1 cut(s) 391
BspT107I GGYRCC 1 cut(s) 503
BspTI CTTAAG 1 cut(s) 101
BsrI ACTGG 2 cut(s) 21, 533
BssECI CCNNGG 2 cut(s) 507, 618
BssMI GATC 1 cut(s) 156
BssT1I CCWWGG 2 cut(s) 507, 618
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 4 cut(s) 240, 305, 556, 570
BstAFI CTTAAG 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 11, 248
BstDSI CCRYGG 1 cut(s) 618
BstF5I GGATG 2 cut(s) 517, 630
BstFNI CGCG 1 cut(s) 416
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNI CCWGG 1 cut(s) 6
BstNSI RCATGY 1 cut(s) 363
BstSCI CCNGG 2 cut(s) 4, 48
BstUI CGCG 1 cut(s) 416
BstZI CGGCCG 1 cut(s) 46
BsuRI GGCC 2 cut(s) 9, 48
BtgI CCRYGG 1 cut(s) 618
BtsCI GGATG 2 cut(s) 517, 630
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 346
CfoI GCGC 1 cut(s) 416
Csp6I GTAC 1 cut(s) 504
CviAII CATG 3 cut(s) 360, 535, 619
CviJI RGCY 9 cut(s) 9, 48, 60, 100, 285, 344, 367, 595, 617
CviKI_1 RGCY 9 cut(s) 9, 48, 60, 100, 285, 344, 367, 595, 617
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 2 cut(s) 11, 248
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 46
EagI CGGCCG 1 cut(s) 46
EciI GGCGGA 1 cut(s) 77
EclXI CGGCCG 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 507, 618
Eco147I AGGCCT 1 cut(s) 9
Eco52I CGGCCG 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 4
EcoT14I CCWWGG 2 cut(s) 507, 618
ErhI CCWWGG 2 cut(s) 507, 618
FaeI CATG 3 cut(s) 363, 538, 622
FatI CATG 3 cut(s) 359, 534, 618
FokI GGATG 1 cut(s) 524
GlaI GCGC 1 cut(s) 415
GsaI CCCAGC 1 cut(s) 371
HaeIII GGCC 2 cut(s) 9, 48
HapII CCGG 1 cut(s) 49
HhaI GCGC 1 cut(s) 416
Hin1II CATG 3 cut(s) 363, 538, 622
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HindIII AAGCTT 3 cut(s) 58, 98, 342
HinfI GANTC 3 cut(s) 106, 140, 602
HpaII CCGG 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 291, 484, 607
Hpy188III TCNNGA 4 cut(s) 35, 79, 110, 524
HpyAV CCTTC 2 cut(s) 328, 403
HpyCH4III ACNGT 4 cut(s) 240, 305, 556, 570
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 5 cut(s) 166, 177, 191, 348, 631
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
HpyF3I CTNAG 2 cut(s) 11, 248
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 3 cut(s) 363, 538, 622
HspAI GCGC 1 cut(s) 414
KpnI GGTACC 1 cut(s) 507
Kzo9I GATC 1 cut(s) 156
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 433
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 1 cut(s) 125
MluCI AATT 2 cut(s) 116, 450
MlyI GAGTC 2 cut(s) 115, 611
MmeI TCCRAC 3 cut(s) 134, 314, 386
MnlI CCTC 2 cut(s) 297, 329
MseI TTAA 4 cut(s) 102, 119, 212, 468
MslI CAYNNNNRTG 1 cut(s) 623
MspCI CTTAAG 1 cut(s) 101
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 2 cut(s) 6, 50
MvaI CCWGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 1 cut(s) 354
NciI CCSGG 1 cut(s) 50
NcoI CCATGG 1 cut(s) 618
NdeII GATC 1 cut(s) 156
NlaIII CATG 3 cut(s) 363, 538, 622
NlaIV GGNNCC 1 cut(s) 505
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 1 cut(s) 363
NspV TTCGAA 1 cut(s) 391
PceI AGGCCT 1 cut(s) 9
PciI ACATGT 1 cut(s) 359
PfeI GAWTC 1 cut(s) 140
PflFI GACNNNGTC 2 cut(s) 305, 530
PleI GAGTC 2 cut(s) 114, 610
PpsI GAGTC 2 cut(s) 114, 610
PscI ACATGT 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 505
PsyI GACNNNGTC 2 cut(s) 305, 530
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
RseI CAYNNNNRTG 1 cut(s) 623
SaqAI TTAA 4 cut(s) 102, 119, 212, 468
Sau3AI GATC 1 cut(s) 156
SchI GAGTC 2 cut(s) 115, 611
ScrFI CCNGG 2 cut(s) 6, 50
SfuI TTCGAA 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 116, 450
SseBI AGGCCT 1 cut(s) 9
SsiI CCGC 1 cut(s) 88
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 4, 48
StyI CCWWGG 2 cut(s) 507, 618
TaaI ACNGT 4 cut(s) 240, 305, 556, 570
TaiI ACGT 1 cut(s) 426
TaqI TCGA 2 cut(s) 109, 391
TasI AATT 2 cut(s) 116, 450
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 4 cut(s) 102, 119, 212, 468
Tru9I TTAA 4 cut(s) 102, 119, 212, 468
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
Tth111I GACNNNGTC 2 cut(s) 305, 530
Vha464I CTTAAG 1 cut(s) 101
XapI RAATTY 1 cut(s) 450
XceI RCATGY 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.