Rroxscaffold_6G00425130

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000673
Physical Location & Seq
Forward (+)
46129369 .. 46130535
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425130.1

Sequence Viewer

Length: 1167 bp
ATGCCAATTGAAATCTTAACCTCAGTTGCTGAACGTCTCTCACCTACACCAATCACTGCTGATATCAATCTTTTTCACTTTGGTTCCGTCTGCAAAACTTGGCGACAAGCTAGCTTTCGTGCAGGAGTTCGACGTCGTTCAAGTTTGCCATGGCTAATTAACGGCGAATACGAGTTGATTTGCAGAAATTTACCAGCATTGAAGTGTCAGTTCTCCGATTTCTGGTCCAAACAAATTTTATACTCCTATGCAGAAGTCTTACCGAAAAAATTGTGGAGAAACCCTACTGCACATGCTTCAAAAAATGGCTGGTTGCTTTTGTCGACGGATGAGTGTTTTAATCCTCTTATGGCAAGAACCTCATTCTTTTTTTTTAATCCTTTTCGTGAGAAGATGGCGATCATCGAGTTACCTGAAAATTTGAATTTTACAGTCAATCAGGAAATAGTAGCATCAACGTTCACAACAAATCCAACTTGTCCCAATGATTGTCATATCTTTGTAGCGTGTGGTAGATCATCTAACCGAAAAATTTGCAGCATATATACTTGTAATCTGCACGATGGCGAATGGAAAGATCAGGATATACACTGTGACATGGAACTATTTGATGTGGCATATATGGACGGAGCTTTCTATGGCGTTTTTTCAGACGGGATTTCAATAGTATTGCATGTCTTCACATTTAGAAGACGGAGCTTTCTATCGCGTCTTAAGAAAGCCATTGGACAAGCTGATGATGGTGAACAATGTGATCCATTCGTTATCTCCTCCTCCTCCTCTTCCTTAAGAAAGAAGGAGAATGATGATCTCTATTTAGTTGAGGCTGATGGGGATCTCTTATTAGCAATTTGTTCTATTGATGACACTCCCAGTTATTGTCACATATACCGGTTGGATCCGTCACGTAAAAAATGGAATCGAATTAGGAACTTGGGAAATCGAGTAATGATTTTGTCTTGCGATGGTGTTGGATCGTTTGTAGTTCCTGCAGTGCGAGATGCTAAAGAATTTGCAAATACGGTCTTTATTTATCGAGACTCAAGTAATGCTCATGCTATCTGCGAAAGTACTGAAGCCACTTGGATATTTGACAAAAAAATCCATCATGTAAATCCTTCTGAAGCAGGCACCACTCTCATTGAACCCCCTGACTTATGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

388

Amino Acids

44.26

Weight (kDa)

6.27

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 87 - 333 1.5e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 1130
AccI GTMKAC 1 cut(s) 323
AccII CGCG 1 cut(s) 709
AclI AACGTT 1 cut(s) 458
AclWI GGATC 5 cut(s) 749, 843, 893, 906, 982
AcsI RAATTY 6 cut(s) 187, 234, 418, 424, 531, 1010
AcuI CTGAAG 2 cut(s) 1095, 1143
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 1 cut(s) 1072
AfiI CCNNNNNNNGG 1 cut(s) 222
AflII CTTAAG 2 cut(s) 713, 787
AgeI ACCGGT 1 cut(s) 891
AgsI TTSAA 7 cut(s) 11, 141, 202, 300, 424, 663, 1145
AluBI AGCT 5 cut(s) 110, 114, 632, 699, 734
AluI AGCT 5 cut(s) 110, 114, 632, 699, 734
Alw26I GTCTC 2 cut(s) 41, 1032
AlwI GGATC 5 cut(s) 749, 843, 893, 906, 982
AlwNI CAGNNNCTG 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 537
ApoI RAATTY 6 cut(s) 187, 234, 418, 424, 531, 1010
AsiGI ACCGGT 1 cut(s) 891
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 33, 755
AsuNHI GCTAGC 1 cut(s) 110
AvaII GGWCC 1 cut(s) 225
BamHI GGATCC 1 cut(s) 898
BanI GGYRCC 1 cut(s) 1130
BbsI GAAGAC 2 cut(s) 670, 697
BbvI GCAGC 1 cut(s) 549
BccI CCATC 6 cut(s) 388, 557, 734, 824, 959, 1113
BceAI ACGGC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 516, 550
BcoDI GTCTC 2 cut(s) 41, 1032
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 990
BfrI CTTAAG 2 cut(s) 713, 787
BisI GCNGC 1 cut(s) 538
BlsI GCNGC 1 cut(s) 539
BmcAI AGTACT 1 cut(s) 1072
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 3 cut(s) 85, 900, 1132
BmrI ACTGGG 1 cut(s) 867
BmsI GCATC 2 cut(s) 461, 991
BmtI GCTAGC 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 867
BpiI GAAGAC 2 cut(s) 670, 697
BpuEI CTTGAG 1 cut(s) 1027
BsaAI YACGTR 1 cut(s) 908
BsaBI GATNNNNATC 3 cut(s) 66, 398, 834
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 891
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse118I RCCGGY 1 cut(s) 891
Bse1I ACTGG 1 cut(s) 873
Bse8I GATNNNNATC 3 cut(s) 66, 398, 834
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 3 cut(s) 66, 398, 834
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 873
BseRI GAGGAG 4 cut(s) 760, 763, 766, 769
BseXI GCAGC 1 cut(s) 549
BsgI GTGCAG 3 cut(s) 141, 273, 542
Bsh1236I CGCG 1 cut(s) 709
BshNI GGYRCC 1 cut(s) 1130
BshTI ACCGGT 1 cut(s) 891
BsiSI CCGG 1 cut(s) 892
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 41, 1032
BsmBI CGTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 465
Bsp143I GATC 8 cut(s) 399, 515, 577, 754, 808, 835, 898, 974
Bsp19I CCATGG 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 35
BspFNI CGCG 1 cut(s) 709
BspLI GGNNCC 3 cut(s) 85, 900, 1132
BspMAI CTGCAG 1 cut(s) 994
BspOI GCTAGC 1 cut(s) 114
BspPI GGATC 5 cut(s) 749, 843, 893, 906, 982
BspT107I GGYRCC 1 cut(s) 1130
BspTI CTTAAG 2 cut(s) 713, 787
BsrFI RCCGGY 1 cut(s) 891
BsrI ACTGG 1 cut(s) 873
BssAI RCCGGY 1 cut(s) 891
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 8 cut(s) 399, 515, 577, 754, 808, 835, 898, 974
BssNI GRCGYC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 149
Bst4CI ACNGT 3 cut(s) 433, 593, 1024
Bst6I CTCTTC 1 cut(s) 787
BstACI GRCGYC 1 cut(s) 133
BstAFI CTTAAG 2 cut(s) 713, 787
BstBAI YACGTR 1 cut(s) 908
BstC8I GCNNGC 2 cut(s) 112, 1129
BstDEI CTNAG 1 cut(s) 22
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 709
BstKTI GATC 8 cut(s) 402, 518, 580, 757, 811, 838, 901, 977
BstMAI GTCTC 2 cut(s) 41, 1032
BstMBI GATC 8 cut(s) 399, 515, 577, 754, 808, 835, 898, 974
BstNSI RCATGY 2 cut(s) 296, 677
BstSFI CTRYAG 1 cut(s) 990
BstUI CGCG 1 cut(s) 709
BstV1I GCAGC 1 cut(s) 549
BstV2I GAAGAC 2 cut(s) 670, 697
BstX2I RGATCY 2 cut(s) 835, 898
BstYI RGATCY 2 cut(s) 835, 898
BtgI CCRYGG 1 cut(s) 149
BtgZI GCGATG 1 cut(s) 978
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 2 cut(s) 54, 999
BtsIMutI CAGTG 3 cut(s) 54, 589, 999
Cac8I GCNNGC 2 cut(s) 112, 1129
CaiI CAGNNNCTG 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 891
Cfr13I GGNCC 1 cut(s) 225
CseI GACGC 1 cut(s) 698
Csp6I GTAC 1 cut(s) 1071
CspAI ACCGGT 1 cut(s) 891
CspCI CAANNNNNGTGG 2 cut(s) 1123, 1158
CviAII CATG 6 cut(s) 150, 293, 598, 674, 1055, 1109
CviQI GTAC 1 cut(s) 1071
DdeI CTNAG 1 cut(s) 22
DpnI GATC 8 cut(s) 401, 517, 579, 756, 810, 837, 900, 976
DpnII GATC 8 cut(s) 399, 515, 577, 754, 808, 835, 898, 974
Eam1104I CTCTTC 1 cut(s) 787
EarI CTCTTC 1 cut(s) 787
Eco130I CCWWGG 1 cut(s) 149
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 225
Eco57I CTGAAG 2 cut(s) 1095, 1143
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 6 cut(s) 153, 296, 601, 677, 1058, 1112
FaqI GGGAC 1 cut(s) 465
FatI CATG 6 cut(s) 149, 292, 597, 673, 1054, 1108
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 538
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 538
FspBI CTAG 1 cut(s) 111
GluI GCNGC 1 cut(s) 538
HapII CCGG 1 cut(s) 892
HgaI GACGC 1 cut(s) 698
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 6 cut(s) 153, 296, 601, 677, 1058, 1112
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 2 cut(s) 919, 1040
HpaII CCGG 1 cut(s) 892
HphI GGTGA 2 cut(s) 33, 755
Hpy166II GTNNAC 3 cut(s) 324, 462, 746
Hpy188I TCNGA 3 cut(s) 217, 652, 1123
Hpy188III TCNNGA 4 cut(s) 386, 440, 581, 1037
Hpy8I GTNNAC 3 cut(s) 324, 462, 746
Hpy99I CGWCG 3 cut(s) 135, 138, 328
HpyAV CCTTC 2 cut(s) 790, 1128
HpyCH4III ACNGT 3 cut(s) 433, 593, 1024
HpyCH4IV ACGT 4 cut(s) 34, 133, 458, 907
HpyF3I CTNAG 1 cut(s) 22
HpySE526I ACGT 4 cut(s) 34, 133, 458, 907
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 6 cut(s) 153, 296, 601, 677, 1058, 1112
Kzo9I GATC 8 cut(s) 399, 515, 577, 754, 808, 835, 898, 974
LmnI GCTCC 2 cut(s) 629, 696
Lsp1109I GCAGC 1 cut(s) 549
LweI GCATC 2 cut(s) 461, 991
MaeI CTAG 1 cut(s) 111
MaeII ACGT 4 cut(s) 34, 133, 458, 907
MaeIII GTNAC 4 cut(s) 408, 593, 881, 903
MalI GATC 8 cut(s) 401, 517, 579, 756, 810, 837, 900, 976
MboI GATC 8 cut(s) 399, 515, 577, 754, 808, 835, 898, 974
MboII GAAGA 4 cut(s) 403, 670, 702, 774
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 2 cut(s) 835, 898
MlyI GAGTC 1 cut(s) 1034
MmeI TCCRAC 3 cut(s) 497, 876, 952
MnlI CCTC 8 cut(s) 31, 354, 370, 781, 784, 787, 790, 817
MseI TTAA 6 cut(s) 17, 159, 339, 375, 714, 788
MslI CAYNNNNRTG 1 cut(s) 202
MspCI CTTAAG 2 cut(s) 713, 787
MspI CCGG 1 cut(s) 892
MunI CAATTG 1 cut(s) 6
MvnI CGCG 1 cut(s) 709
NcoI CCATGG 1 cut(s) 149
NdeII GATC 8 cut(s) 399, 515, 577, 754, 808, 835, 898, 974
NheI GCTAGC 1 cut(s) 110
NlaIII CATG 6 cut(s) 153, 296, 601, 677, 1058, 1112
NlaIV GGNNCC 3 cut(s) 85, 900, 1132
NmuCI GTSAC 3 cut(s) 593, 881, 903
NspI RCATGY 2 cut(s) 296, 677
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 1 cut(s) 919
PinAI ACCGGT 1 cut(s) 891
PkrI GCNGC 1 cut(s) 539
PleI GAGTC 1 cut(s) 1034
PpsI GAGTC 1 cut(s) 1034
Ppu21I YACGTR 1 cut(s) 908
Psp1406I AACGTT 1 cut(s) 458
PspN4I GGNNCC 3 cut(s) 85, 900, 1132
PspPI GGNCC 1 cut(s) 225
PstI CTGCAG 1 cut(s) 994
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 2 cut(s) 835, 898
RsaI GTAC 1 cut(s) 1072
RsaNI GTAC 1 cut(s) 1071
RseI CAYNNNNRTG 1 cut(s) 202
SalI GTCGAC 1 cut(s) 322
SaqAI TTAA 6 cut(s) 17, 159, 339, 375, 714, 788
SatI GCNGC 1 cut(s) 538
Sau3AI GATC 8 cut(s) 399, 515, 577, 754, 808, 835, 898, 974
Sau96I GGNCC 1 cut(s) 225
ScaI AGTACT 1 cut(s) 1072
SchI GAGTC 1 cut(s) 1034
SfaNI GCATC 2 cut(s) 461, 991
SfcI CTRYAG 1 cut(s) 990
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 202
SmlI CTYRAG 3 cut(s) 713, 787, 1042
SmoI CTYRAG 3 cut(s) 713, 787, 1042
SspMI CTAG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 3 cut(s) 433, 593, 1024
TaiI ACGT 4 cut(s) 37, 136, 461, 910
TaqI TCGA 6 cut(s) 130, 323, 405, 922, 943, 1036
TatI WGTACW 1 cut(s) 1070
TfiI GAWTC 1 cut(s) 919
Tru1I TTAA 6 cut(s) 17, 159, 339, 375, 714, 788
Tru9I TTAA 6 cut(s) 17, 159, 339, 375, 714, 788
TscAI CASTG 3 cut(s) 61, 596, 999
TseFI GTSAC 3 cut(s) 593, 881, 903
TseI GCWGC 1 cut(s) 537
Tsp45I GTSAC 3 cut(s) 593, 881, 903
TspGWI ACGGA 5 cut(s) 76, 341, 642, 709, 891
TspRI CASTG 3 cut(s) 61, 596, 999
Vha464I CTTAAG 2 cut(s) 713, 787
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 6 cut(s) 187, 234, 418, 424, 531, 1010
XceI RCATGY 2 cut(s) 296, 677
XmiI GTMKAC 1 cut(s) 323
XspI CTAG 1 cut(s) 111
ZraI GACGTC 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.