Rmu_sc0002414.1_g000009

F-box kelch-repeat protein At1g57790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002414.1
OG0000673
Physical Location & Seq
Forward (+)
22188 .. 24519
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002414.1_g000009.1.cds

Sequence Viewer

Length: 1329 bp
atggcatcattgtctgatctttcaaacgatatcttaatcacaatcgccctacttctttcttattgtgatcttgttcgccttgctacactatgcaagacattccaccgattagctgtttatgtggttcaacttcaacgtcgtcgagatataccatggctgatggacattgatcgctatacgcttcacagtaatatcttcaaatctgagcttttggatttccagttcaaccagagtttctctctttcaaaaattatagggagccaagtgcgagaactactctatattggttctgttgtggcttcaaaatatggatggttgcttataacagaatctcggtttccgacgaatcctaagtactgtttttgtagtcctcttacaaatgagattatcgaattgcctccaatagggtcggacgactatttcataggtgcaacgttctccagccctccaacttcctccgattgtgttgtattcctgatatgtaaaagaggtttaactaaagcaaaaagaaatatctgcagcataagcacatgcaatctcagagaaagaagatggacaacttatacctctaatgttcctccggaagcccaaatttgggaagtagcgtatgtgaatggaagtttttattgtgccttcactgacggttcaaccgtgctattaggtaccttcaatgttgcacttcaggactggactatagtggactattcatcctccatagagatcaaaccgtgtgattgtgtctatctggttgattctgatggggagctcttactaatggttcttcgtcaccatcgttttgggagtgtttatagtgtttgtcatcagtttaatcgattacgaaaagattggactctaattgagagcttgggaaatcaagtgttgtttttctcagacaagggatccattgtagttccagcagttggggtcgttagtgcttttgccaatatgatagtttggcttggcttgtcgaccgaactcaagtcttctacttacaaaactgcaggcggttggaaatatcacgagttgaaaacatggaacaccaccacgttgccaatctggattgaacccctatatattttagaaaagagctctctctctcctccgtccccgacggaaaacagagcaaccttcaccggccatgttctccaccgtccggccacctctgggcgagtaaccactcccataagctttgcctcactcctccgaagctgtctgtggccacctttcaaggcggagcagcccctagcggcggcggcggcccggtttcgatttaagctcgattttggtcaacgccggttttctcctagctccgggcaccaaaacttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

442

Amino Acids

49.93

Weight (kDa)

8.71

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
Acc65I GGTACC 1 cut(s) 662
AccB1I GGYRCC 2 cut(s) 662, 1314
AccB7I CCANNNNNTGG 1 cut(s) 920
AccI GTMKAC 1 cut(s) 968
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 6 cut(s) 1005, 1232, 1247, 1250, 1253, 1256
AclI AACGTT 1 cut(s) 434
AclWI GGATC 2 cut(s) 894, 907
AcoI YGGCCR 3 cut(s) 1135, 1155, 1217
AcsI RAATTY 1 cut(s) 591
AcuI CTGAAG 1 cut(s) 665
AfaI GTAC 2 cut(s) 356, 664
AfiI CCNNNNNNNGG 8 cut(s) 404, 594, 595, 920, 1153, 1164, 1249, 1310
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
AluBI AGCT 9 cut(s) 113, 208, 766, 864, 1089, 1188, 1209, 1276, 1308
AluI AGCT 9 cut(s) 113, 208, 766, 864, 1089, 1188, 1209, 1276, 1308
Alw21I GWGCWC 2 cut(s) 768, 1091
AlwI GGATC 2 cut(s) 894, 907
Aor13HI TCCGGA 1 cut(s) 580
AoxI GGCC 4 cut(s) 1135, 1155, 1217, 1257
ApeKI GCWGC 2 cut(s) 519, 1237
ApoI RAATTY 1 cut(s) 591
Asp718I GGTACC 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 1258
AsuC2I CCSGG 2 cut(s) 1261, 1312
AsuHPI GGTGA 2 cut(s) 779, 1123
BaeGI GKGCMC 1 cut(s) 1317
BalI TGGCCA 1 cut(s) 1219
BamHI GGATCC 1 cut(s) 899
BanI GGYRCC 2 cut(s) 662, 1314
BanII GRGCYC 2 cut(s) 768, 1091
BauI CACGAG 1 cut(s) 1019
BbsI GAAGAC 1 cut(s) 975
Bbv12I GWGCWC 2 cut(s) 768, 1091
BbvI GCAGC 2 cut(s) 531, 1249
BccI CCATC 5 cut(s) 154, 306, 546, 752, 798
BcnI CCSGG 2 cut(s) 1261, 1312
BfaI CTAG 2 cut(s) 1244, 1305
BfmI CTRYAG 3 cut(s) 517, 693, 999
BisI GCNGC 6 cut(s) 520, 1238, 1248, 1251, 1254, 1257
BlsI GCNGC 6 cut(s) 521, 1239, 1249, 1252, 1255, 1258
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 2 cut(s) 1261, 1312
BmgT120I GGNCC 1 cut(s) 1258
BmiI GGNNCC 4 cut(s) 260, 664, 901, 1316
BmrFI CCNGG 2 cut(s) 1261, 1312
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 975
BplI GAGNNNNNCTC 4 cut(s) 223, 255, 261, 293
BpmI CTGGAG 1 cut(s) 424
BpuEI CTTGAG 1 cut(s) 962
BpuMI CCSGG 2 cut(s) 1261, 1312
Bsa29I ATCGAT 1 cut(s) 832
BsaJI CCNNGG 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 8 cut(s) 404, 594, 595, 920, 1153, 1164, 1249, 1310
Bse118I RCCGGY 2 cut(s) 1133, 1293
Bse1I ACTGG 2 cut(s) 220, 692
BseAI TCCGGA 1 cut(s) 580
BseCI ATCGAT 1 cut(s) 832
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 317, 707
BseLI CCNNNNNNNGG 8 cut(s) 404, 594, 595, 920, 1153, 1164, 1249, 1310
BseMII CTCAG 3 cut(s) 195, 553, 903
BseNI ACTGG 2 cut(s) 220, 692
BseRI GAGGAG 2 cut(s) 1089, 1190
BseSI GKGCMC 1 cut(s) 1317
BseXI GCAGC 2 cut(s) 531, 1249
Bsh1285I CGRYCG 1 cut(s) 972
BshFI GGCC 4 cut(s) 1137, 1157, 1219, 1259
BshNI GGYRCC 2 cut(s) 662, 1314
BshVI ATCGAT 1 cut(s) 832
BsiEI CGRYCG 1 cut(s) 972
BsiHKAI GWGCWC 2 cut(s) 768, 1091
BsiSI CCGG 6 cut(s) 581, 1134, 1154, 1261, 1294, 1311
BslFI GGGAC 1 cut(s) 1090
BslI CCNNNNNNNGG 8 cut(s) 404, 594, 595, 920, 1153, 1164, 1249, 1310
BsmFI GGGAC 1 cut(s) 1090
BsnI GGCC 4 cut(s) 1137, 1157, 1219, 1259
Bsp1286I GDGCHC 3 cut(s) 768, 1091, 1317
Bsp13I TCCGGA 1 cut(s) 580
Bsp143I GATC 5 cut(s) 16, 67, 169, 720, 899
Bsp19I CCATGG 1 cut(s) 152
BspACI CCGC 6 cut(s) 1005, 1232, 1247, 1250, 1253, 1256
BspANI GGCC 4 cut(s) 1137, 1157, 1219, 1259
BspCNI CTCAG 3 cut(s) 196, 552, 902
BspDI ATCGAT 1 cut(s) 832
BspEI TCCGGA 1 cut(s) 580
BspLI GGNNCC 4 cut(s) 260, 664, 901, 1316
BspMAI CTGCAG 2 cut(s) 521, 1003
BspPI GGATC 2 cut(s) 894, 907
BspT107I GGYRCC 2 cut(s) 662, 1314
BsrFI RCCGGY 2 cut(s) 1133, 1293
BsrI ACTGG 2 cut(s) 220, 692
BssAI RCCGGY 2 cut(s) 1133, 1293
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 5 cut(s) 16, 67, 169, 720, 899
BssSI CACGAG 1 cut(s) 1019
BssT1I CCWWGG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 1019
Bst4CI ACNGT 6 cut(s) 188, 359, 644, 652, 729, 1151
BstC8I GCNNGC 1 cut(s) 1003
BstDEI CTNAG 4 cut(s) 204, 351, 539, 889
BstDSI CCRYGG 1 cut(s) 152
BstENI CCTNNNNNAGG 1 cut(s) 402
BstF5I GGATG 2 cut(s) 317, 707
BstKTI GATC 5 cut(s) 19, 70, 172, 723, 902
BstMBI GATC 5 cut(s) 16, 67, 169, 720, 899
BstMCI CGRYCG 1 cut(s) 972
BstMWI GCNNNNNNNGC 3 cut(s) 525, 1253, 1256
BstNSI RCATGY 1 cut(s) 534
BstSCI CCNGG 2 cut(s) 1259, 1310
BstSFI CTRYAG 3 cut(s) 517, 693, 999
BstSLI GKGCMC 1 cut(s) 1317
BstV1I GCAGC 2 cut(s) 531, 1249
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 1 cut(s) 899
BstXI CCANNNNNNTGG 1 cut(s) 797
BstYI RGATCY 1 cut(s) 899
Bsu15I ATCGAT 1 cut(s) 832
BsuRI GGCC 4 cut(s) 1137, 1157, 1219, 1259
BsuTUI ATCGAT 1 cut(s) 832
BtgI CCRYGG 1 cut(s) 152
BtsCI GGATG 2 cut(s) 317, 707
BtsIMutI CAGTG 1 cut(s) 636
Cac8I GCNNGC 1 cut(s) 1003
Cfr10I RCCGGY 2 cut(s) 1133, 1293
Cfr13I GGNCC 1 cut(s) 1258
ClaI ATCGAT 1 cut(s) 832
Csp6I GTAC 2 cut(s) 355, 663
CviAII CATG 4 cut(s) 153, 531, 1032, 1139
CviQI GTAC 2 cut(s) 355, 663
DdeI CTNAG 4 cut(s) 204, 351, 539, 889
DpnI GATC 5 cut(s) 18, 69, 171, 722, 901
DpnII GATC 5 cut(s) 16, 67, 169, 720, 899
EaeI YGGCCR 3 cut(s) 1135, 1155, 1217
EciI GGCGGA 1 cut(s) 1247
Ecl136II GAGCTC 2 cut(s) 766, 1089
Eco130I CCWWGG 1 cut(s) 152
Eco24I GRGCYC 2 cut(s) 768, 1091
Eco32I GATATC 1 cut(s) 31
Eco53kI GAGCTC 2 cut(s) 766, 1089
Eco57I CTGAAG 1 cut(s) 665
EcoICRI GAGCTC 2 cut(s) 766, 1089
EcoNI CCTNNNNNAGG 1 cut(s) 402
EcoRV GATATC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 152
EcoT38I GRGCYC 2 cut(s) 768, 1091
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 4 cut(s) 156, 534, 1035, 1142
FaqI GGGAC 1 cut(s) 1090
FatI CATG 4 cut(s) 152, 530, 1031, 1138
FblI GTMKAC 1 cut(s) 968
Fnu4HI GCNGC 6 cut(s) 520, 1238, 1248, 1251, 1254, 1257
FokI GGATG 2 cut(s) 324, 694
FriOI GRGCYC 2 cut(s) 768, 1091
Fsp4HI GCNGC 6 cut(s) 520, 1238, 1248, 1251, 1254, 1257
FspBI CTAG 2 cut(s) 1244, 1305
GluI GCNGC 6 cut(s) 520, 1238, 1248, 1251, 1254, 1257
GsuI CTGGAG 1 cut(s) 424
HaeIII GGCC 4 cut(s) 1137, 1157, 1219, 1259
HapII CCGG 6 cut(s) 581, 1134, 1154, 1261, 1294, 1311
Hin1II CATG 4 cut(s) 156, 534, 1035, 1142
HincII GTYRAC 2 cut(s) 969, 1289
HindII GTYRAC 2 cut(s) 969, 1289
HindIII AAGCTT 1 cut(s) 1186
HinfI GANTC 4 cut(s) 329, 346, 752, 850
HpaII CCGG 6 cut(s) 581, 1134, 1154, 1261, 1294, 1311
HphI GGTGA 2 cut(s) 779, 1123
Hpy166II GTNNAC 3 cut(s) 700, 969, 1289
Hpy188III TCNNGA 6 cut(s) 143, 475, 581, 683, 1019, 1057
Hpy8I GTNNAC 3 cut(s) 700, 969, 1289
Hpy99I CGWCG 4 cut(s) 141, 144, 346, 1114
HpyAV CCTTC 3 cut(s) 643, 676, 1138
HpyCH4III ACNGT 6 cut(s) 188, 359, 644, 652, 729, 1151
HpyCH4IV ACGT 3 cut(s) 136, 434, 1046
HpyCH4V TGCA 6 cut(s) 93, 431, 519, 534, 677, 1001
HpyF10VI GCNNNNNNNGC 3 cut(s) 525, 1253, 1256
HpyF3I CTNAG 4 cut(s) 204, 351, 539, 889
HpySE526I ACGT 3 cut(s) 136, 434, 1046
Hsp92II CATG 4 cut(s) 156, 534, 1035, 1142
Kpn2I TCCGGA 1 cut(s) 580
KpnI GGTACC 1 cut(s) 666
Kzo9I GATC 5 cut(s) 16, 67, 169, 720, 899
LmnI GCTCC 4 cut(s) 258, 763, 1234, 1313
Lsp1109I GCAGC 2 cut(s) 531, 1249
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 1244, 1305
MaeII ACGT 3 cut(s) 136, 434, 1046
MaeIII GTNAC 2 cut(s) 785, 1171
MalI GATC 5 cut(s) 18, 69, 171, 722, 901
MboI GATC 5 cut(s) 16, 67, 169, 720, 899
MboII GAAGA 4 cut(s) 187, 561, 773, 975
MflI RGATCY 1 cut(s) 899
MhlI GDGCHC 3 cut(s) 768, 1091, 1317
MlsI TGGCCA 1 cut(s) 1219
MluCI AATT 4 cut(s) 249, 392, 591, 855
MluNI TGGCCA 1 cut(s) 1219
MlyI GAGTC 1 cut(s) 844
MmeI TCCRAC 4 cut(s) 365, 390, 473, 989
Mox20I TGGCCA 1 cut(s) 1219
MroI TCCGGA 1 cut(s) 580
MscI TGGCCA 1 cut(s) 1219
MseI TTAA 4 cut(s) 35, 494, 828, 1272
Msp20I TGGCCA 1 cut(s) 1219
MspI CCGG 6 cut(s) 581, 1134, 1154, 1261, 1294, 1311
MspR9I CCNGG 2 cut(s) 1261, 1312
MwoI GCNNNNNNNGC 3 cut(s) 525, 1253, 1256
NciI CCSGG 2 cut(s) 1261, 1312
NcoI CCATGG 1 cut(s) 152
NdeII GATC 5 cut(s) 16, 67, 169, 720, 899
NlaIII CATG 4 cut(s) 156, 534, 1035, 1142
NlaIV GGNNCC 4 cut(s) 260, 664, 901, 1316
NmuCI GTSAC 1 cut(s) 785
NspI RCATGY 1 cut(s) 534
PcsI WCGNNNNNNNCGW 2 cut(s) 648, 790
PfeI GAWTC 3 cut(s) 329, 346, 752
PflMI CCANNNNNTGG 1 cut(s) 920
PkrI GCNGC 6 cut(s) 521, 1239, 1249, 1252, 1255, 1258
PleI GAGTC 1 cut(s) 844
PpsI GAGTC 1 cut(s) 844
PsiI TTATAA 1 cut(s) 323
Psp124BI GAGCTC 2 cut(s) 768, 1091
Psp1406I AACGTT 1 cut(s) 434
PspN4I GGNNCC 4 cut(s) 260, 664, 901, 1316
PspPI GGNCC 1 cut(s) 1258
PstI CTGCAG 2 cut(s) 521, 1003
PsuI RGATCY 1 cut(s) 899
RsaI GTAC 2 cut(s) 356, 664
RsaNI GTAC 2 cut(s) 355, 663
SacI GAGCTC 2 cut(s) 768, 1091
SalI GTCGAC 1 cut(s) 967
SaqAI TTAA 4 cut(s) 35, 494, 828, 1272
SatI GCNGC 6 cut(s) 520, 1238, 1248, 1251, 1254, 1257
Sau3AI GATC 5 cut(s) 16, 67, 169, 720, 899
Sau96I GGNCC 1 cut(s) 1258
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 1 cut(s) 844
ScrFI CCNGG 2 cut(s) 1261, 1312
SduI GDGCHC 3 cut(s) 768, 1091, 1317
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 3 cut(s) 517, 693, 999
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
Sse9I AATT 4 cut(s) 249, 392, 591, 855
SsiI CCGC 6 cut(s) 1005, 1232, 1247, 1250, 1253, 1256
SspMI CTAG 2 cut(s) 1244, 1305
SstI GAGCTC 2 cut(s) 768, 1091
StyD4I CCNGG 2 cut(s) 1259, 1310
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 6 cut(s) 188, 359, 644, 652, 729, 1151
TaiI ACGT 3 cut(s) 139, 437, 1049
TaqI TCGA 6 cut(s) 142, 390, 832, 968, 1267, 1278
TaqII GACCGA 1 cut(s) 986
TasI AATT 4 cut(s) 249, 392, 591, 855
TatI WGTACW 1 cut(s) 354
TauI GCSGC 4 cut(s) 1250, 1253, 1256, 1259
TfiI GAWTC 3 cut(s) 329, 346, 752
Tru1I TTAA 4 cut(s) 35, 494, 828, 1272
Tru9I TTAA 4 cut(s) 35, 494, 828, 1272
TscAI CASTG 1 cut(s) 643
TseFI GTSAC 1 cut(s) 785
TseI GCWGC 2 cut(s) 519, 1237
Tsp45I GTSAC 1 cut(s) 785
TspDTI ATGAA 2 cut(s) 412, 696
TspGWI ACGGA 2 cut(s) 1092, 1127
TspRI CASTG 1 cut(s) 643
Van91I CCANNNNNTGG 1 cut(s) 920
XagI CCTNNNNNAGG 1 cut(s) 402
XapI RAATTY 1 cut(s) 591
XceI RCATGY 1 cut(s) 534
XmiI GTMKAC 1 cut(s) 968
XspI CTAG 2 cut(s) 1244, 1305
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.