Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000673

Physical Location & Seq

Genomic Coordinates Reverse (-)

19729709 .. 19730815

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43964

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCATCATTGTCTGATCTTTCAAACGATATCTTAATCACAATCGCCCTACTTCTTTCTTATTGTGATCTTGTTCGCCTTGCTACACTATGCAAGACATTCCACCGATTAGCTGTTTATGTGGTTCAACTTCAACGTCGTCGAGATATACCATGGCTGATGGACATTAATCGCTATACGCTTCAAAGTAATATCTTCAAATCTGAGCTTTTGGATTTCCAGTTCAACCAGAGTTTCTCTCTTTCAAAAATTATAGGGAGCCAAGTGCGAGAACTACTCTATATTGGTTCTGTTGTGGCTTCAAAATATGGATGGTTGCTTATAACAGAATCTCGGTTTCCGACGAATCCTAAGTACTGTTTTTGTAGTCCTCTTACAAATGAGATTATCGAATTGCCTCCAATAGGGTCGGACGACTATTTCATAGGTGCAACGTTCTCCAGCCCTCCAACTTCCTCCGATTGTGTTGTATTCCTGATATGTAAAAGAGGTTTAACTAAAGCAAAAAGAAATATCTGCAGCATAAGCACATGCAATCTCAGAGAAAGAAGATGGACAACTTATACCTCTAACGTTCCTCCGGAAGCCCAAATTTGGGAAGTAGCGTATGTGAATGGAAGTTTTTATTGTGCCTTCACTGACGGTTCAACCGTGCTATTAGGTACCTTCAATGTTGCACTTCAGGACTGGACTATAGTGGACTATTCATCCTCCATAGAGATCAAACCGTGTGATTGTGTCTATCTGGTTGATTCTGATGGGGAGCTCTTACTAATGGTTCTTCGTCACCATCGTTTTGGGCGTGTTTATAGTGTTTGTCATCAGTTTAATCGATTACGAAAAGATTGGACTCTAATTGAGAGCTTGGGAAATCAAGTGTTGTTTTTCTCAGACAAGGGATCCATTGTAGTTCCAGCAGTTGGGGTCGTTAGTGCTTTTGCTAATATGATAGTTTGGCTTGGCTTGTCGACCGAACTCAAGTCTTCTACTTACAAAACTGAAGGCCGTTGGAAATATCACGAGTTGAAAACATGGAACACCACCACGTTGCCAATCTGGATTGAACCCCTATATATTTTAGAAAAGAGGTCCTTTTTAACTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

368

Amino Acids

42.03

Weight (kDa)

8.19

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	96 - 317	8e-26	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26661 FvH4_2g26662 FvH4_3g21700 FvH4_3g21711 FvH4_3g21801 FvH4_4g17781 FvH4_4g20671 FvH4_5g08112 FvH4_5g19010
pyrus_communis	pycom11g20050 pycom12g20870
rosa_chinensis	RchiOBHm_Chr3g0473991 RchiOBHm_Chr6g0295501
rosa_laevigata	RLG00000011844 RLG00000011846 RLG00000011847 RLG00000023960 RLG00000025447 RLG00000025455 RLG00000027507 RLG00000029040 RLG00000033754 RLG00000033763 RLG00000033780 RLG00000033784
rosa_multiflora	Rmu_co8461177.1_g000001 Rmu_sc0000006.1_g000007 Rmu_sc0000475.1_g000005 Rmu_sc0001331.1_g000009 Rmu_sc0001576.1_g000022 Rmu_sc0002271.1_g000033 Rmu_sc0002414.1_g000009 Rmu_sc0002521.1_g000001 Rmu_sc0003170.1_g000006 Rmu_sc0003854.1_g000002 Rmu_sc0004190.1_g000002 Rmu_sc0005137.1_g000016 Rmu_sc0006633.1_g000002 Rmu_sc0012290.1_g000003 Rmu_sc0022254.1_g000001 Rmu_sc0027615.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043510 Rroxscaffold_1G00043580 Rroxscaffold_1G00043780 Rroxscaffold_3G00266190 Rroxscaffold_4G00311360 Rroxscaffold_5G00368090 Rroxscaffold_6G00407580 Rroxscaffold_6G00425070 Rroxscaffold_6G00425130 Rroxscaffold_7G00173050
rosa_rugosa	Rorug02G0654500 Rorug04G0209000
rosa_samantha	Rh1AG322000 Rh1BG144900 Rh2CG355900 Rh3BG060900 Rh3BG216400 Rh3DG212200 Rh4CG284500 Rh5AG254200 Rh5BG255100 Rh5BG256200 Rh5CG287800 Rh5CG289200 Rh5CG289300 Rh6AG364700 Rh6BG366800 Rh6DG360500 Rh7AG097700 Rh7BG098700 Rh7CG099600
rosa_wichuraiana	Rw3G004540 Rw5G023530 Rw6G031400 Rw6G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
Acc65I	GGTACC	1 cut(s)	662
AccB1I	GGYRCC	1 cut(s)	662
AccB7I	CCANNNNNTGG	1 cut(s)	920
AccI	GTMKAC	1 cut(s)	968
AccIII	TCCGGA	1 cut(s)	580
AclI	AACGTT	2 cut(s)	434, 573
AclWI	GGATC	2 cut(s)	894, 907
AcsI	RAATTY	1 cut(s)	591
AcuI	CTGAAG	2 cut(s)	665, 1020
AfaI	GTAC	2 cut(s)	356, 664
AfiI	CCNNNNNNNGG	4 cut(s)	404, 594, 595, 920
AloI	GAACNNNNNNTCC	2 cut(s)	206, 238
AluBI	AGCT	4 cut(s)	113, 208, 766, 864
AluI	AGCT	4 cut(s)	113, 208, 766, 864
Alw21I	GWGCWC	1 cut(s)	768
AlwI	GGATC	2 cut(s)	894, 907
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	1 cut(s)	1003
ApeKI	GCWGC	1 cut(s)	519
ApoI	RAATTY	1 cut(s)	591
AseI	ATTAAT	1 cut(s)	168
Asp718I	GGTACC	1 cut(s)	662
AspS9I	GGNCC	1 cut(s)	1089
AsuHPI	GGTGA	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	1089
BamHI	GGATCC	1 cut(s)	899
BanI	GGYRCC	1 cut(s)	662
BanII	GRGCYC	1 cut(s)	768
BauI	CACGAG	1 cut(s)	1019
BbsI	GAAGAC	1 cut(s)	975
Bbv12I	GWGCWC	1 cut(s)	768
BbvI	GCAGC	1 cut(s)	531
BccI	CCATC	5 cut(s)	154, 306, 546, 752, 798
BceAI	ACGGC	1 cut(s)	990
BfmI	CTRYAG	2 cut(s)	517, 693
BisI	GCNGC	1 cut(s)	520
BlsI	GCNGC	1 cut(s)	521
BmcAI	AGTACT	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	1089
BmgT120I	GGNCC	1 cut(s)	1089
BmiI	GGNNCC	3 cut(s)	260, 664, 901
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	975
BplI	GAGNNNNNCTC	4 cut(s)	223, 255, 261, 293
BpmI	CTGGAG	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	962
Bsa29I	ATCGAT	1 cut(s)	832
BsaJI	CCNNGG	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	4 cut(s)	404, 594, 595, 920
Bse1I	ACTGG	3 cut(s)	220, 692, 1105
BseAI	TCCGGA	1 cut(s)	580
BseCI	ATCGAT	1 cut(s)	832
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	2 cut(s)	317, 707
BseLI	CCNNNNNNNGG	4 cut(s)	404, 594, 595, 920
BseMII	CTCAG	3 cut(s)	195, 553, 903
BseNI	ACTGG	3 cut(s)	220, 692, 1105
BseXI	GCAGC	1 cut(s)	531
Bsh1285I	CGRYCG	1 cut(s)	972
BshFI	GGCC	1 cut(s)	1005
BshNI	GGYRCC	1 cut(s)	662
BshVI	ATCGAT	1 cut(s)	832
BsiEI	CGRYCG	1 cut(s)	972
BsiHKAI	GWGCWC	1 cut(s)	768
BsiSI	CCGG	1 cut(s)	581
BslI	CCNNNNNNNGG	4 cut(s)	404, 594, 595, 920
BsnI	GGCC	1 cut(s)	1005
Bsp1286I	GDGCHC	1 cut(s)	768
Bsp13I	TCCGGA	1 cut(s)	580
Bsp143I	GATC	4 cut(s)	16, 67, 720, 899
Bsp19I	CCATGG	1 cut(s)	152
BspANI	GGCC	1 cut(s)	1005
BspCNI	CTCAG	3 cut(s)	196, 552, 902
BspDI	ATCGAT	1 cut(s)	832
BspEI	TCCGGA	1 cut(s)	580
BspLI	GGNNCC	3 cut(s)	260, 664, 901
BspMAI	CTGCAG	1 cut(s)	521
BspPI	GGATC	2 cut(s)	894, 907
BspT107I	GGYRCC	1 cut(s)	662
BsrI	ACTGG	3 cut(s)	220, 692, 1105
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	4 cut(s)	16, 67, 720, 899
BssSI	CACGAG	1 cut(s)	1019
BssT1I	CCWWGG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	1019
Bst4CI	ACNGT	4 cut(s)	359, 644, 652, 729
BstDEI	CTNAG	4 cut(s)	204, 351, 539, 889
BstDSI	CCRYGG	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	317, 707
BstKTI	GATC	4 cut(s)	19, 70, 723, 902
BstMBI	GATC	4 cut(s)	16, 67, 720, 899
BstMCI	CGRYCG	1 cut(s)	972
BstMWI	GCNNNNNNNGC	1 cut(s)	525
BstNSI	RCATGY	1 cut(s)	534
BstSFI	CTRYAG	2 cut(s)	517, 693
BstV1I	GCAGC	1 cut(s)	531
BstV2I	GAAGAC	1 cut(s)	975
BstX2I	RGATCY	1 cut(s)	899
BstXI	CCANNNNNNTGG	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	899
Bsu15I	ATCGAT	1 cut(s)	832
BsuRI	GGCC	1 cut(s)	1005
BsuTUI	ATCGAT	1 cut(s)	832
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	317, 707
BtsIMutI	CAGTG	1 cut(s)	636
Cfr13I	GGNCC	1 cut(s)	1089
ClaI	ATCGAT	1 cut(s)	832
Csp6I	GTAC	2 cut(s)	355, 663
CviAII	CATG	3 cut(s)	153, 531, 1032
CviQI	GTAC	2 cut(s)	355, 663
DdeI	CTNAG	4 cut(s)	204, 351, 539, 889
DpnI	GATC	4 cut(s)	18, 69, 722, 901
DpnII	GATC	4 cut(s)	16, 67, 720, 899
Ecl136II	GAGCTC	1 cut(s)	766
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	768
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	1089
Eco53kI	GAGCTC	1 cut(s)	766
Eco57I	CTGAAG	2 cut(s)	665, 1020
EcoICRI	GAGCTC	1 cut(s)	766
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	1089
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	3 cut(s)	156, 534, 1035
FalI	AAGNNNNNCTT	1 cut(s)	1076
FatI	CATG	3 cut(s)	152, 530, 1031
FblI	GTMKAC	1 cut(s)	968
Fnu4HI	GCNGC	1 cut(s)	520
FokI	GGATG	2 cut(s)	324, 694
FriOI	GRGCYC	1 cut(s)	768
Fsp4HI	GCNGC	1 cut(s)	520
GluI	GCNGC	1 cut(s)	520
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	1 cut(s)	1005
HapII	CCGG	1 cut(s)	581
Hin1II	CATG	3 cut(s)	156, 534, 1035
HincII	GTYRAC	1 cut(s)	969
HindII	GTYRAC	1 cut(s)	969
HinfI	GANTC	4 cut(s)	329, 346, 752, 850
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	1 cut(s)	779
Hpy166II	GTNNAC	2 cut(s)	700, 969
Hpy188I	TCNGA	8 cut(s)	16, 205, 342, 412, 460, 542, 757, 892
Hpy188III	TCNNGA	6 cut(s)	143, 475, 581, 683, 1019, 1057
Hpy8I	GTNNAC	2 cut(s)	700, 969
Hpy99I	CGWCG	3 cut(s)	141, 144, 346
HpyAV	CCTTC	3 cut(s)	643, 676, 995
HpyCH4III	ACNGT	4 cut(s)	359, 644, 652, 729
HpyCH4IV	ACGT	4 cut(s)	136, 434, 573, 1046
HpyCH4V	TGCA	5 cut(s)	93, 431, 519, 534, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	525
HpyF3I	CTNAG	4 cut(s)	204, 351, 539, 889
HpySE526I	ACGT	4 cut(s)	136, 434, 573, 1046
Hsp92II	CATG	3 cut(s)	156, 534, 1035
Kpn2I	TCCGGA	1 cut(s)	580
KpnI	GGTACC	1 cut(s)	666
Kzo9I	GATC	4 cut(s)	16, 67, 720, 899
LmnI	GCTCC	2 cut(s)	258, 763
Lsp1109I	GCAGC	1 cut(s)	531
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	4 cut(s)	136, 434, 573, 1046
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	4 cut(s)	18, 69, 722, 901
MboI	GATC	4 cut(s)	16, 67, 720, 899
MboII	GAAGA	4 cut(s)	187, 561, 773, 975
MflI	RGATCY	1 cut(s)	899
MhlI	GDGCHC	1 cut(s)	768
MluCI	AATT	4 cut(s)	249, 392, 591, 855
MlyI	GAGTC	1 cut(s)	844
MmeI	TCCRAC	4 cut(s)	365, 390, 473, 989
MnlI	CCTC	9 cut(s)	381, 408, 456, 466, 482, 577, 588, 721, 1080
MroI	TCCGGA	1 cut(s)	580
MseI	TTAA	5 cut(s)	35, 168, 494, 828, 1097
MspI	CCGG	1 cut(s)	581
MwoI	GCNNNNNNNGC	1 cut(s)	525
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	16, 67, 720, 899
NlaIII	CATG	3 cut(s)	156, 534, 1035
NlaIV	GGNNCC	3 cut(s)	260, 664, 901
NmuCI	GTSAC	1 cut(s)	785
NspI	RCATGY	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	3 cut(s)	648, 790, 799
PfeI	GAWTC	3 cut(s)	329, 346, 752
PflMI	CCANNNNNTGG	1 cut(s)	920
PkrI	GCNGC	1 cut(s)	521
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
PpuMI	RGGWCCY	1 cut(s)	1089
PshBI	ATTAAT	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	768
Psp1406I	AACGTT	2 cut(s)	434, 573
Psp5II	RGGWCCY	1 cut(s)	1089
PspN4I	GGNNCC	3 cut(s)	260, 664, 901
PspPI	GGNCC	1 cut(s)	1089
PspPPI	RGGWCCY	1 cut(s)	1089
PstI	CTGCAG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	899
RsaI	GTAC	2 cut(s)	356, 664
RsaNI	GTAC	2 cut(s)	355, 663
SacI	GAGCTC	1 cut(s)	768
SalI	GTCGAC	1 cut(s)	967
SaqAI	TTAA	5 cut(s)	35, 168, 494, 828, 1097
SatI	GCNGC	1 cut(s)	520
Sau3AI	GATC	4 cut(s)	16, 67, 720, 899
Sau96I	GGNCC	1 cut(s)	1089
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	1 cut(s)	844
SduI	GDGCHC	1 cut(s)	768
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	2 cut(s)	517, 693
SinI	GGWCC	1 cut(s)	1089
SmlI	CTYRAG	1 cut(s)	977
SmoI	CTYRAG	1 cut(s)	977
Sse9I	AATT	4 cut(s)	249, 392, 591, 855
SstI	GAGCTC	1 cut(s)	768
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	4 cut(s)	359, 644, 652, 729
TaiI	ACGT	4 cut(s)	139, 437, 576, 1049
TaqI	TCGA	4 cut(s)	142, 390, 832, 968
TaqII	GACCGA	1 cut(s)	986
TasI	AATT	4 cut(s)	249, 392, 591, 855
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	3 cut(s)	329, 346, 752
Tru1I	TTAA	5 cut(s)	35, 168, 494, 828, 1097
Tru9I	TTAA	5 cut(s)	35, 168, 494, 828, 1097
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	1 cut(s)	519
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	2 cut(s)	412, 696
TspRI	CASTG	1 cut(s)	643
Van91I	CCANNNNNTGG	1 cut(s)	920
VpaK11BI	GGWCC	1 cut(s)	1089
VspI	ATTAAT	1 cut(s)	168
XagI	CCTNNNNNAGG	1 cut(s)	402
XapI	RAATTY	1 cut(s)	591
XceI	RCATGY	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	968
ZrmI	AGTACT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.