Rh7CG099600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000673
Physical Location & Seq
Forward (+)
7458959 .. 7468328
9370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG099600.1

Sequence Viewer

Length: 567 bp
ATGGAACTACCCCTTTTGAACATGGACATGTTTGATAATGACGAAGATGTTAAGGTAGCAGCAATCTTTTCGACTAGTCCAACTTGTCATGACTGTGTAATCTTTGTGATCCTCTATAGAAGTACCGATGGTCGATGTTCTACAAGCAAACATTGCTTTATAAGCACCTGTAAACTCAGTGATAAAAGATGGATTACTCGAGAGTATCCTCGGCCTCAAGATCATGAAATTGGGGGCTTAGCTTATGTGGATGGAGTTGTCCACTGTGTTTTTTACCTGGGATACTCGTCAATAACATTTGCTACCTTCCATGTAGCCCTTAAAGACTGGGTTATGATAGACTATTCCGCCTTTTCAAAACTACGTGTTTTCTTTCCATGGAAGTGTTACTTGGTTGAGTCTGGTAGGGAGCTCTTATTTGCATTTTACGGTCTGGACAACTCTTTTGATAAGGATAGAGAGATTCTTTACTGGCATATCTACCAATTTGATCGCTCAAGGAAAGATTGGACTAGAGTTTTAACTGATTTGATGCAAATTGTACCCCACCCAATTTCATTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

22.15

Weight (kDa)

5.94

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 2 - 173 7.3e-08 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 161
AciI CCGC 1 cut(s) 348
AclWI GGATC 1 cut(s) 103
AfaI GTAC 2 cut(s) 124, 543
AflIII ACRYGT 2 cut(s) 27, 364
AgsI TTSAA 2 cut(s) 19, 357
AhlI ACTAGT 1 cut(s) 74
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 2 cut(s) 242, 412
AluI AGCT 2 cut(s) 242, 412
Alw21I GWGCWC 1 cut(s) 414
AlwI GGATC 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 59
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AvaI CYCGRG 1 cut(s) 198
BanII GRGCYC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 71
BccI CCATC 3 cut(s) 122, 183, 245
BcgI CGANNNNNNTGC 2 cut(s) 51, 85
BciT130I CCWGG 1 cut(s) 278
BciVI GTATCC 2 cut(s) 216, 275
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 2 cut(s) 75, 513
BfmI CTRYAG 1 cut(s) 115
BfuI GTATCC 2 cut(s) 216, 275
BisI GCNGC 1 cut(s) 60
BlpI GCTNAGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 278
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 522
BmuI ACTGGG 1 cut(s) 337
Bpu1102I GCTNAGC 1 cut(s) 238
BpuEI CTTGAG 2 cut(s) 201, 481
BsaAI YACGTR 1 cut(s) 365
BsaJI CCNNGG 3 cut(s) 209, 277, 377
Bse1I ACTGG 2 cut(s) 332, 476
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 3 cut(s) 209, 277, 377
BseGI GGATG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 190
BseNI ACTGG 2 cut(s) 332, 476
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 198
BsnI GGCC 1 cut(s) 214
BsoBI CYCGRG 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 3 cut(s) 108, 220, 490
Bsp1720I GCTNAGC 1 cut(s) 238
Bsp19I CCATGG 1 cut(s) 377
BspACI CCGC 1 cut(s) 348
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 189
BspHI TCATGA 2 cut(s) 88, 223
BspPI GGATC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 2 cut(s) 332, 476
BssECI CCNNGG 3 cut(s) 209, 277, 377
BssMI GATC 3 cut(s) 108, 220, 490
BssT1I CCWWGG 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 3 cut(s) 95, 266, 431
BstAPI GCANNNNNTGC 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 365
BstDEI CTNAG 2 cut(s) 176, 238
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 3 cut(s) 111, 223, 493
BstMBI GATC 3 cut(s) 108, 220, 490
BstMWI GCNNNNNNNGC 2 cut(s) 153, 162
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 71
BsuI GTATCC 2 cut(s) 216, 275
BsuRI GGCC 1 cut(s) 214
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 2 cut(s) 184, 262
CciI TCATGA 2 cut(s) 88, 223
Csp6I GTAC 2 cut(s) 123, 542
CviAII CATG 6 cut(s) 22, 28, 89, 224, 311, 378
CviJI RGCY 5 cut(s) 214, 237, 242, 317, 412
CviKI_1 RGCY 5 cut(s) 214, 237, 242, 317, 412
CviQI GTAC 2 cut(s) 123, 542
DdeI CTNAG 2 cut(s) 176, 238
DpnI GATC 3 cut(s) 110, 222, 492
DpnII GATC 3 cut(s) 108, 220, 490
EciI GGCGGA 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 6 cut(s) 25, 31, 92, 227, 314, 381
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FatI CATG 6 cut(s) 21, 27, 88, 223, 310, 377
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 2 cut(s) 75, 513
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 6 cut(s) 25, 31, 92, 227, 314, 381
HinfI GANTC 2 cut(s) 398, 463
Hpy166II GTNNAC 2 cut(s) 173, 262
Hpy188III TCNNGA 5 cut(s) 89, 200, 218, 224, 434
Hpy8I GTNNAC 2 cut(s) 173, 262
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 3 cut(s) 95, 266, 431
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 2 cut(s) 422, 535
HpyF10VI GCNNNNNNNGC 2 cut(s) 153, 162
HpyF3I CTNAG 2 cut(s) 176, 238
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 6 cut(s) 25, 31, 92, 227, 314, 381
Kzo9I GATC 3 cut(s) 108, 220, 490
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 7 cut(s) 181, 263, 290, 313, 387, 419, 457
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 522
MaeI CTAG 2 cut(s) 75, 513
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 110, 222, 492
MboI GATC 3 cut(s) 108, 220, 490
MboII GAAGA 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 4 cut(s) 228, 485, 537, 552
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 3 cut(s) 122, 219, 225
MseI TTAA 3 cut(s) 51, 321, 521
MslI CAYNNNNRTG 3 cut(s) 26, 93, 382
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 153, 162
NcoI CCATGG 1 cut(s) 377
NdeII GATC 3 cut(s) 108, 220, 490
NlaIII CATG 6 cut(s) 25, 31, 92, 227, 314, 381
NmeAIII GCCGAG 1 cut(s) 190
NspI RCATGY 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 198
PagI TCATGA 2 cut(s) 88, 223
PciI ACATGT 1 cut(s) 27
PfeI GAWTC 1 cut(s) 463
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Ppu21I YACGTR 1 cut(s) 365
PscI ACATGT 1 cut(s) 27
PsiI TTATAA 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
RsaI GTAC 2 cut(s) 124, 543
RsaNI GTAC 2 cut(s) 123, 542
RseI CAYNNNNRTG 3 cut(s) 26, 93, 382
SacI GAGCTC 1 cut(s) 414
SaqAI TTAA 3 cut(s) 51, 321, 521
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 3 cut(s) 108, 220, 490
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 1 cut(s) 414
SetI ASST 7 cut(s) 57, 170, 244, 279, 308, 367, 414
SfaNI GCATC 1 cut(s) 522
SfcI CTRYAG 1 cut(s) 115
Sfr274I CTCGAG 1 cut(s) 198
SlaI CTCGAG 1 cut(s) 198
SmiMI CAYNNNNRTG 3 cut(s) 26, 93, 382
SmlI CTYRAG 3 cut(s) 198, 216, 496
SmoI CTYRAG 3 cut(s) 198, 216, 496
SpeI ACTAGT 1 cut(s) 74
Sse9I AATT 4 cut(s) 228, 485, 537, 552
SsiI CCGC 1 cut(s) 348
SspMI CTAG 2 cut(s) 75, 513
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 3 cut(s) 95, 266, 431
TaiI ACGT 1 cut(s) 367
TaqI TCGA 3 cut(s) 71, 133, 199
TasI AATT 4 cut(s) 228, 485, 537, 552
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 3 cut(s) 51, 321, 521
Tru9I TTAA 3 cut(s) 51, 321, 521
TscAI CASTG 2 cut(s) 184, 269
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 240, 546
TspRI CASTG 2 cut(s) 184, 269
XceI RCATGY 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 198
XspI CTAG 2 cut(s) 75, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.