Rh4CG284500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000673
Physical Location & Seq
Forward (+)
54145861 .. 54146637
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG284500.1

Sequence Viewer

Length: 777 bp
ATGTTCACTGTTCCGCCGACTTCTCCTGATTGTGTTATCTTCGTTGTATCCGAAAGACGTGGAGTTGGCTATTCTGGTGATTGGAGAACAATCTTCAACATAAATACTTTTAGTCTCAAAGATGGAAGACGGAGTACAATTCATACAACTGGTCCTAGTGCTGCTGATATTGGTGATTTGGTCTGTATTGATGGAGTTTTACACTGCCTTTATTATAATGAGAGTGATATTTCGTTATTGAAATTGGCTACCTTCAATGTCACACTTCAAGATTGGACTGTGATGAACTATATATACTCTGAAAGTTCGTTACTGAAACTAGCTGCCTCCGATGCCGCAGTTAATCGGACTCGAAAGAACGATAATTACTTTCATAAATATAACCCTAGGTTTTACTGCTTGGTTGAGTCGACTGATGGGGAGCTGTTCTTAGCAATCAGGTCTACATGTTACAAGTATACTGCTATTAACCAAAGTTATTGGCAAGTTTATCGATTTGATCTGTCCGAATATGAATGGACTCGAATTAACAGTTTGGGAAATCAAGTATTGTTAATGAATGAGCAGGAATTTCGAGAGGATGGGTGTAAGCAGTGGTCGGCAATGGCAGTTCCAACAGTAGGAGAGGCTAGGAAATTTGCAAACATGATAGTTGTTCTTGAAGGGTATCGATGCCGGTGTTTTACCTGCAACACTGAAGGCAATTGGAGGTATCATGCAACTTTCCCTTTGGACAAGGAGAAAGGATACTACAGTTGGATTGAACGCCCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

29.92

Weight (kDa)

6.12

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 4 - 188 4.3e-09 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
Acc36I ACCTGC 1 cut(s) 695
AccI GTMKAC 3 cut(s) 410, 443, 458
AciI CCGC 2 cut(s) 14, 336
AcsI RAATTY 2 cut(s) 569, 635
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 446
AgsI TTSAA 6 cut(s) 97, 241, 256, 269, 662, 764
AjiI CACGTC 1 cut(s) 59
AluBI AGCT 2 cut(s) 323, 424
AluI AGCT 2 cut(s) 323, 424
Alw26I GTCTC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 161, 323
ApoI RAATTY 2 cut(s) 569, 635
AspA2I CCTAGG 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 89, 185
AvaII GGWCC 1 cut(s) 152
AvrII CCTAGG 1 cut(s) 386
BaeI ACNNNNGTAYC 2 cut(s) 739, 772
BarI GAAGNNNNNNTAC 2 cut(s) 118, 150
BbsI GAAGAC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 148, 310
BccI CCATC 4 cut(s) 116, 185, 410, 575
BcgI CGANNNNNNTGC 4 cut(s) 473, 507, 554, 588
BciVI GTATCC 2 cut(s) 58, 740
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 4 cut(s) 156, 320, 387, 630
BfmI CTRYAG 1 cut(s) 751
BfuAI ACCTGC 1 cut(s) 695
BfuI GTATCC 2 cut(s) 58, 740
BisI GCNGC 3 cut(s) 162, 324, 336
BlnI CCTAGG 1 cut(s) 386
BlsI GCNGC 3 cut(s) 163, 325, 337
Bme18I GGWCC 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 152
BmsI GCATC 2 cut(s) 322, 662
BpiI GAAGAC 1 cut(s) 133
Bsa29I ATCGAT 2 cut(s) 493, 670
BsaJI CCNNGG 1 cut(s) 386
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse118I RCCGGY 1 cut(s) 675
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 609
BseCI ATCGAT 2 cut(s) 493, 670
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 1 cut(s) 609
BseNI ACTGG 1 cut(s) 154
BseXI GCAGC 2 cut(s) 148, 310
BshVI ATCGAT 2 cut(s) 493, 670
BsiSI CCGG 1 cut(s) 676
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 499
BspACI CCGC 2 cut(s) 14, 336
BspDI ATCGAT 2 cut(s) 493, 670
BspMI ACCTGC 1 cut(s) 695
BsrDI GCAATG 1 cut(s) 609
BsrFI RCCGGY 1 cut(s) 675
BsrI ACTGG 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 675
BssECI CCNNGG 1 cut(s) 386
BssMI GATC 1 cut(s) 499
BssNAI GTATAC 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 386
Bst1107I GTATAC 1 cut(s) 459
Bst4CI ACNGT 5 cut(s) 10, 280, 533, 619, 755
BstDEI CTNAG 1 cut(s) 430
BstF5I GGATG 1 cut(s) 586
BstKTI GATC 1 cut(s) 502
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 499
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 751
BstV1I GCAGC 2 cut(s) 148, 310
BstV2I GAAGAC 1 cut(s) 133
BstZ17I GTATAC 1 cut(s) 459
Bsu15I ATCGAT 2 cut(s) 493, 670
BsuI GTATCC 2 cut(s) 58, 740
BsuTUI ATCGAT 2 cut(s) 493, 670
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 586
BtsI GCAGTG 2 cut(s) 202, 599
BtsIMutI CAGTG 4 cut(s) 6, 202, 599, 693
BveI ACCTGC 1 cut(s) 695
Cfr10I RCCGGY 1 cut(s) 675
Cfr13I GGNCC 1 cut(s) 152
ClaI ATCGAT 2 cut(s) 493, 670
Csp6I GTAC 1 cut(s) 135
CviAII CATG 3 cut(s) 447, 646, 716
CviJI RGCY 5 cut(s) 69, 248, 323, 424, 629
CviKI_1 RGCY 5 cut(s) 69, 248, 323, 424, 629
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 430
DpnI GATC 1 cut(s) 501
DpnII GATC 1 cut(s) 499
Eco130I CCWWGG 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 717
EcoT14I CCWWGG 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 386
FaeI CATG 3 cut(s) 450, 649, 719
FatI CATG 3 cut(s) 446, 645, 715
FblI GTMKAC 3 cut(s) 410, 443, 458
Fnu4HI GCNGC 3 cut(s) 162, 324, 336
FokI GGATG 1 cut(s) 593
Fsp4HI GCNGC 3 cut(s) 162, 324, 336
FspBI CTAG 4 cut(s) 156, 320, 387, 630
GluI GCNGC 3 cut(s) 162, 324, 336
HapII CCGG 1 cut(s) 676
Hin1II CATG 3 cut(s) 450, 649, 719
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 3 cut(s) 349, 407, 520
HpaII CCGG 1 cut(s) 676
HphI GGTGA 2 cut(s) 89, 185
Hpy166II GTNNAC 4 cut(s) 6, 411, 444, 459
Hpy188I TCNGA 5 cut(s) 52, 301, 331, 348, 508
Hpy188III TCNNGA 4 cut(s) 26, 269, 575, 659
Hpy8I GTNNAC 4 cut(s) 6, 411, 444, 459
HpyAV CCTTC 3 cut(s) 262, 656, 692
HpyCH4III ACNGT 5 cut(s) 10, 280, 533, 619, 755
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 641, 690, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 3 cut(s) 450, 649, 719
Kzo9I GATC 1 cut(s) 499
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 7 cut(s) 39, 60, 135, 424, 551, 689, 700
Lsp1109I GCAGC 2 cut(s) 148, 310
LweI GCATC 2 cut(s) 322, 662
MaeI CTAG 4 cut(s) 156, 320, 387, 630
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 3 cut(s) 259, 309, 449
MalI GATC 1 cut(s) 501
MboI GATC 1 cut(s) 499
MboII GAAGA 3 cut(s) 31, 85, 138
MfeI CAATTG 1 cut(s) 703
MluCI AATT 7 cut(s) 138, 242, 364, 525, 569, 635, 703
MlyI GAGTC 3 cut(s) 343, 416, 514
MmeI TCCRAC 2 cut(s) 638, 737
MnlI CCTC 4 cut(s) 337, 571, 619, 702
MseI TTAA 4 cut(s) 342, 468, 528, 554
MspI CCGG 1 cut(s) 676
MunI CAATTG 1 cut(s) 703
MwoI GCNNNNNNNGC 1 cut(s) 332
NdeII GATC 1 cut(s) 499
NlaIII CATG 3 cut(s) 450, 649, 719
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 1 cut(s) 450
PciI ACATGT 1 cut(s) 446
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PkrI GCNGC 3 cut(s) 163, 325, 337
PleI GAGTC 3 cut(s) 343, 415, 514
PpsI GAGTC 3 cut(s) 343, 415, 514
PscI ACATGT 1 cut(s) 446
PsiI TTATAA 1 cut(s) 216
PspPI GGNCC 1 cut(s) 152
PsrI GAACNNNNNNTAC 4 cut(s) 278, 310, 350, 382
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SalI GTCGAC 1 cut(s) 409
SaqAI TTAA 4 cut(s) 342, 468, 528, 554
SatI GCNGC 3 cut(s) 162, 324, 336
Sau3AI GATC 1 cut(s) 499
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 3 cut(s) 343, 416, 514
SetI ASST 8 cut(s) 61, 254, 325, 392, 426, 443, 689, 713
SfaNI GCATC 2 cut(s) 322, 662
SfcI CTRYAG 1 cut(s) 751
SinI GGWCC 1 cut(s) 152
Sse9I AATT 7 cut(s) 138, 242, 364, 525, 569, 635, 703
SsiI CCGC 2 cut(s) 14, 336
SspMI CTAG 4 cut(s) 156, 320, 387, 630
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 5 cut(s) 10, 280, 533, 619, 755
TaiI ACGT 1 cut(s) 61
TaqI TCGA 6 cut(s) 352, 410, 493, 523, 574, 670
TasI AATT 7 cut(s) 138, 242, 364, 525, 569, 635, 703
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 338
Tru1I TTAA 4 cut(s) 342, 468, 528, 554
Tru9I TTAA 4 cut(s) 342, 468, 528, 554
TscAI CASTG 4 cut(s) 13, 209, 599, 700
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 161, 323
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 5 cut(s) 131, 299, 362, 528, 572
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 4 cut(s) 13, 209, 599, 700
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 2 cut(s) 569, 635
XceI RCATGY 1 cut(s) 450
XmaJI CCTAGG 1 cut(s) 386
XmiI GTMKAC 3 cut(s) 410, 443, 458
XspI CTAG 4 cut(s) 156, 320, 387, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.