Rh6AG364700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000673
Physical Location & Seq
Forward (+)
56357762 .. 56360118
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG364700.1

Sequence Viewer

Length: 330 bp
ATGGACTATGCCTCCATAACACTAGAACACCATACCCAAAGCACAACCTTTTGCGTGGTTGAGTCGGATGGGAAATTATTATTAGCAGTTTCTGATGAATTAGTGCTTCATGGTACCCGCAATTGGTTTTTATACCAGTTTGATTGGTTACCAAAATATTGGACTAGGGTTCAAAGTTTGGGGAATCAGGTATTGCTTCTAAGTCGCTCATCATCAATTGCTTGTCCGACATTGGGGAGGGATAGTAAATTTTCAAACATGATATTTCATCTTAACCTGGGCAAGGAGCCTTTTACTTTCAGTGGTGATGGTGTCTGGAGAAGGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

109

Amino Acids

12.51

Weight (kDa)

6.89

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 17 - 89 6.8e-08 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 113
AciI CCGC 1 cut(s) 118
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 3 cut(s) 123, 233, 283
AgsI TTSAA 2 cut(s) 173, 255
AjnI CCWGG 1 cut(s) 276
AlwNI CAGNNNCTG 1 cut(s) 92
AoxI GGCC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 248
Asp718I GGTACC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 317
BanI GGYRCC 1 cut(s) 113
BccI CCATC 2 cut(s) 62, 302
BciT130I CCWGG 1 cut(s) 278
BfaI CTAG 2 cut(s) 23, 165
Bme1390I CCNGG 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 324
BmiI GGNNCC 2 cut(s) 115, 288
BmrFI CCNGG 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 277
BsaXI ACNNNNNCTCC 3 cut(s) 26, 229, 259
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 233, 283
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 123, 233, 283
BseNI ACTGG 1 cut(s) 136
BshFI GGCC 1 cut(s) 325
BshNI GGYRCC 1 cut(s) 113
BslI CCNNNNNNNGG 3 cut(s) 123, 233, 283
BsnI GGCC 1 cut(s) 325
BspACI CCGC 1 cut(s) 118
BspANI GGCC 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 115, 288
BspT107I GGYRCC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 200
BstEII GGTNACC 1 cut(s) 147
BstENI CCTNNNNNAGG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 73
BstNI CCWGG 1 cut(s) 278
BstPI GGTNACC 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 276
BstXI CCANNNNNNTGG 1 cut(s) 159
BsuRI GGCC 1 cut(s) 325
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 307
CaiI CAGNNNCTG 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 110, 259
CviJI RGCY 2 cut(s) 289, 325
CviKI_1 RGCY 2 cut(s) 289, 325
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 200
Eco91I GGTNACC 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 324
EcoO65I GGTNACC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 113, 262
FaiI YATR 6 cut(s) 9, 17, 33, 111, 133, 260
FatI CATG 2 cut(s) 109, 258
FauI CCCGC 1 cut(s) 125
FokI GGATG 1 cut(s) 80
FspBI CTAG 2 cut(s) 23, 165
HaeIII GGCC 1 cut(s) 325
Hin1II CATG 2 cut(s) 113, 262
HinfI GANTC 2 cut(s) 62, 184
HphI GGTGA 1 cut(s) 317
Hpy188I TCNGA 3 cut(s) 67, 94, 228
Hpy188III TCNNGA 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 315
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 2 cut(s) 113, 262
KpnI GGTACC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 5 cut(s) 149, 173, 263, 290, 301
MaeI CTAG 2 cut(s) 23, 165
MaeIII GTNAC 1 cut(s) 147
MfeI CAATTG 2 cut(s) 121, 216
MluCI AATT 5 cut(s) 74, 98, 121, 216, 248
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 2 cut(s) 45, 251
MnlI CCTC 2 cut(s) 22, 231
MseI TTAA 1 cut(s) 273
MspR9I CCNGG 1 cut(s) 278
MunI CAATTG 2 cut(s) 121, 216
MvaI CCWGG 1 cut(s) 278
NlaIII CATG 2 cut(s) 113, 262
NlaIV GGNNCC 2 cut(s) 115, 288
PfeI GAWTC 1 cut(s) 184
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 276
PspEI GGTNACC 1 cut(s) 147
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 115, 288
PspPI GGNCC 1 cut(s) 324
PstNI CAGNNNCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 324
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 278
SetI ASST 3 cut(s) 50, 192, 279
Sse9I AATT 5 cut(s) 74, 98, 121, 216, 248
SsiI CCGC 1 cut(s) 118
SspI AATATT 1 cut(s) 158
SspMI CTAG 2 cut(s) 23, 165
StyD4I CCNGG 1 cut(s) 276
TasI AATT 5 cut(s) 74, 98, 121, 216, 248
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 307
TspDTI ATGAA 3 cut(s) 98, 111, 257
TspRI CASTG 1 cut(s) 307
XagI CCTNNNNNAGG 1 cut(s) 281
XapI RAATTY 1 cut(s) 248
XspI CTAG 2 cut(s) 23, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.