pycom11g20050

F-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
22584625 .. 22585065
441 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g20050.1

Sequence Viewer

Length: 441 bp
ATGTTAAACAAAGTAGCTGAACATCTCTCACATCTTGATCTTTGTCACATTTCTGCGGTGTGCAGGAGTTGGCGAGCTGTTCCGGAATGGGTTCAACTGAGTGCAAACAGGCAATCATCACCATGCCTACATAGTGTGTCACCTTGGAGCAAGAAGGTCGATGGTAAAACCGTGAAGGCGTTAGAGCTCTTTGATCTGTCATCCAACTTATTTATTGGAAGCACGCATCTAATAGGAGAAGAAGGGGGAGGGCTCATTGCCAATGCTCGACTTCATTCTTCAAAACACGGTTGGTTACTTTTCTCAAAAGTCGAAAATTCGTCCAATAGCGGGAGGACAACATTCTTTTATTTTAATCCCTTCTGCAATCAGGTTCTGGAAATACCTCCGTTAGATCTGTACACGGATGAAAAGGTTTACAACCACTCCAACTTCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

7.08

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 82
AciI CCGC 2 cut(s) 56, 330
AcsI RAATTY 1 cut(s) 316
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 330
AgsI TTSAA 2 cut(s) 95, 282
AluBI AGCT 3 cut(s) 17, 77, 187
AluI AGCT 3 cut(s) 17, 77, 187
Alw21I GWGCWC 1 cut(s) 189
AlwNI CAGNNNCTG 1 cut(s) 376
Aor13HI TCCGGA 1 cut(s) 82
ApoI RAATTY 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 111, 132
BanII GRGCYC 2 cut(s) 189, 255
Bbv12I GWGCWC 1 cut(s) 189
BccI CCATC 1 cut(s) 155
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BglII AGATCT 1 cut(s) 394
BmsI GCATC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 2 cut(s) 200, 412
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 189, 255
Bsp13I TCCGGA 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 3 cut(s) 37, 193, 394
BspACI CCGC 2 cut(s) 56, 330
BspCNI CTCAG 1 cut(s) 90
BspEI TCCGGA 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 255
BsrGI TGTACA 1 cut(s) 399
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 3 cut(s) 37, 193, 394
BssT1I CCWWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 172, 290
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 2 cut(s) 75, 224
BstDEI CTNAG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 200, 412
BstKTI GATC 3 cut(s) 40, 196, 397
BstMBI GATC 3 cut(s) 37, 193, 394
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BtsCI GGATG 2 cut(s) 200, 412
Cac8I GCNNGC 2 cut(s) 75, 224
CaiI CAGNNNCTG 1 cut(s) 376
Csp6I GTAC 1 cut(s) 400
CviAII CATG 1 cut(s) 123
CviJI RGCY 4 cut(s) 17, 77, 187, 253
CviKI_1 RGCY 4 cut(s) 17, 77, 187, 253
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 1 cut(s) 98
DpnI GATC 3 cut(s) 39, 195, 396
DpnII GATC 3 cut(s) 37, 193, 394
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 143
Eco24I GRGCYC 2 cut(s) 189, 255
Eco53kI GAGCTC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 143
EcoT38I GRGCYC 2 cut(s) 189, 255
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 1 cut(s) 126
FaiI YATR 2 cut(s) 124, 132
FatI CATG 1 cut(s) 122
FauI CCCGC 1 cut(s) 323
FokI GGATG 2 cut(s) 187, 419
FriOI GRGCYC 2 cut(s) 189, 255
HapII CCGG 1 cut(s) 83
Hin1II CATG 1 cut(s) 126
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 111, 132
Hpy166II GTNNAC 2 cut(s) 402, 418
Hpy188III TCNNGA 4 cut(s) 35, 83, 377, 438
Hpy8I GTNNAC 2 cut(s) 402, 418
HpyAV CCTTC 4 cut(s) 148, 169, 236, 370
HpyCH4III ACNGT 2 cut(s) 172, 290
HpyCH4V TGCA 3 cut(s) 63, 104, 366
HpyF3I CTNAG 1 cut(s) 98
Hsp92II CATG 1 cut(s) 126
Kpn2I TCCGGA 1 cut(s) 82
Kzo9I GATC 3 cut(s) 37, 193, 394
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 5 cut(s) 49, 94, 96, 356, 362
LweI GCATC 1 cut(s) 235
MaeIII GTNAC 3 cut(s) 44, 138, 294
MalI GATC 3 cut(s) 39, 195, 396
MboI GATC 3 cut(s) 37, 193, 394
MboII GAAGA 2 cut(s) 251, 270
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 189, 255
MluCI AATT 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 3 cut(s) 242, 327, 396
MroI TCCGGA 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 2 cut(s) 5, 354
MslI CAYNNNNRTG 1 cut(s) 121
MspI CCGG 1 cut(s) 83
NdeII GATC 3 cut(s) 37, 193, 394
NlaIII CATG 1 cut(s) 126
NmuCI GTSAC 2 cut(s) 44, 138
PdmI GAANNNNTTC 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 376
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 121
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 2 cut(s) 5, 354
Sau3AI GATC 3 cut(s) 37, 193, 394
SduI GDGCHC 2 cut(s) 189, 255
SetI ASST 8 cut(s) 19, 79, 145, 159, 189, 375, 388, 417
SfaNI GCATC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 1 cut(s) 316
SsiI CCGC 2 cut(s) 56, 330
SstI GAGCTC 1 cut(s) 189
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 2 cut(s) 172, 290
TaqI TCGA 3 cut(s) 159, 268, 312
TasI AATT 1 cut(s) 316
TatI WGTACW 1 cut(s) 399
Tru1I TTAA 2 cut(s) 5, 354
Tru9I TTAA 2 cut(s) 5, 354
TseFI GTSAC 2 cut(s) 44, 138
Tsp45I GTSAC 2 cut(s) 44, 138
TspDTI ATGAA 2 cut(s) 263, 423
TspGWI ACGGA 2 cut(s) 378, 419
XapI RAATTY 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.