Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012290.1

Orthogroup ID

OG0000673

Physical Location & Seq

Genomic Coordinates Forward (+)

12543 .. 13551

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012290.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgaacattctttttggtccgaccttccaatcgatatcttatgcgaagtcgccgatcgtctcccatattgggatcttgttcgttttgctgccatttggagttggattttcaggtagtattagcaacattcacgacccccggcctccaatctatgccgactgtgttatcttcgtcatttccagaaggtatggatatactgatgatcacatcataaacacatgtaagctccgagatagaagatggagtgttcataaaactagatatcaaggttctgttgaaggagttacttacctagatggaattttctattgtgttattccacagataattgatggttctttgtcactttcgatcaataccttcaatatagcactccaagactgggtcatggactatgcctccataacactagaacaccatacccaaagcacaaccttttgcgtggctgagtcggatgggaaattattattagcagtttctgatgaactagtgcttcatggtacccgcaattggtttttataccagtttgattggttacgaaaatattggactagggttcaaagtttggggaatcaggtattgcttctaagtcgctcatcatcaattgcttgtccgacattggggagggatagtaaattttcaaacatgatatttcatcttaacctgggcaaggagccttttactttcagtggtgatggtgtctggagaaggccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

238

Amino Acids

27.08

Weight (kDa)

8.27

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26661 FvH4_2g26662 FvH4_3g21700 FvH4_3g21711 FvH4_3g21801 FvH4_4g17781 FvH4_4g20671 FvH4_5g08112 FvH4_5g19010
pyrus_communis	pycom11g20050 pycom12g20870
rosa_chinensis	RchiOBHm_Chr3g0473991 RchiOBHm_Chr6g0295501
rosa_laevigata	RLG00000011844 RLG00000011846 RLG00000011847 RLG00000023960 RLG00000025447 RLG00000025455 RLG00000027507 RLG00000029040 RLG00000033754 RLG00000033763 RLG00000033780 RLG00000033784
rosa_multiflora	Rmu_co8461177.1_g000001 Rmu_sc0000006.1_g000007 Rmu_sc0000475.1_g000005 Rmu_sc0001331.1_g000009 Rmu_sc0001576.1_g000022 Rmu_sc0002271.1_g000033 Rmu_sc0002414.1_g000009 Rmu_sc0002521.1_g000001 Rmu_sc0003170.1_g000006 Rmu_sc0003854.1_g000002 Rmu_sc0004190.1_g000002 Rmu_sc0005137.1_g000016 Rmu_sc0006633.1_g000002 Rmu_sc0012290.1_g000003 Rmu_sc0022254.1_g000001 Rmu_sc0027615.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043510 Rroxscaffold_1G00043580 Rroxscaffold_1G00043780 Rroxscaffold_3G00266190 Rroxscaffold_4G00311360 Rroxscaffold_5G00368090 Rroxscaffold_6G00407580 Rroxscaffold_6G00425070 Rroxscaffold_6G00425130 Rroxscaffold_7G00173050
rosa_rugosa	Rorug02G0654500 Rorug04G0209000
rosa_samantha	Rh1AG322000 Rh1BG144900 Rh2CG355900 Rh3BG060900 Rh3BG216400 Rh3DG212200 Rh4CG284500 Rh5AG254200 Rh5BG255100 Rh5BG256200 Rh5CG287800 Rh5CG289200 Rh5CG289300 Rh6AG364700 Rh6BG366800 Rh6DG360500 Rh7AG097700 Rh7BG098700 Rh7CG099600
rosa_wichuraiana	Rw3G004540 Rw5G023530 Rw6G031400 Rw6G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	500
AciI	CCGC	1 cut(s)	505
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	300, 635
AfaI	GTAC	1 cut(s)	502
AfiI	CCNNNNNNNGG	5 cut(s)	69, 382, 510, 620, 670
AflIII	ACRYGT	1 cut(s)	218
AgsI	TTSAA	4 cut(s)	278, 364, 560, 642
AhlI	ACTAGT	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	663
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	2 cut(s)	140, 710
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	2 cut(s)	300, 635
Asp718I	GGTACC	1 cut(s)	500
AspS9I	GGNCC	2 cut(s)	17, 711
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	5 cut(s)	234, 290, 326, 449, 689
BciT130I	CCWGG	1 cut(s)	665
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	5 cut(s)	258, 293, 410, 488, 552
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	2 cut(s)	139, 665
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	2 cut(s)	17, 711
BmiI	GGNNCC	2 cut(s)	502, 675
BmrFI	CCNGG	2 cut(s)	139, 665
BmrI	ACTGGG	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	391
BpuMI	CCSGG	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	137, 664
BsaXI	ACNNNNNCTCC	4 cut(s)	383, 413, 616, 646
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 382, 510, 620, 670
Bse1I	ACTGG	2 cut(s)	386, 523
BseBI	CCWGG	1 cut(s)	665
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	137, 664
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	5 cut(s)	69, 382, 510, 620, 670
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	386, 523
BseXI	GCAGC	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	142, 712
BshNI	GGYRCC	1 cut(s)	500
BshVI	ATCGAT	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	5 cut(s)	69, 382, 510, 620, 670
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	142, 712
Bsp143I	GATC	4 cut(s)	54, 72, 202, 351
BspACI	CCGC	1 cut(s)	505
BspANI	GGCC	2 cut(s)	142, 712
BspCNI	CTCAG	1 cut(s)	439
BspDI	ATCGAT	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	502, 675
BspPI	GGATC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	386, 523
BssECI	CCNNGG	2 cut(s)	137, 664
BssMI	GATC	4 cut(s)	54, 72, 202, 351
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	447, 587
BstENI	CCTNNNNNAGG	1 cut(s)	668
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	4 cut(s)	57, 75, 205, 354
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	4 cut(s)	54, 72, 202, 351
BstMCI	CGRYCG	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	137, 663
BstV1I	GCAGC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
Bsu15I	ATCGAT	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	142, 712
BsuTUI	ATCGAT	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	694
CaiI	CAGNNNCTG	1 cut(s)	479
Cfr13I	GGNCC	2 cut(s)	17, 711
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	501
CviAII	CATG	4 cut(s)	219, 388, 497, 646
CviJI	RGCY	5 cut(s)	142, 226, 446, 676, 712
CviKI_1	RGCY	5 cut(s)	142, 226, 446, 676, 712
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	2 cut(s)	447, 587
DpnI	GATC	4 cut(s)	56, 74, 204, 353
DpnII	GATC	4 cut(s)	54, 72, 202, 351
Eco32I	GATATC	2 cut(s)	36, 263
Eco47I	GGWCC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	711
EcoRII	CCWGG	1 cut(s)	663
EcoRV	GATATC	2 cut(s)	36, 263
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	4 cut(s)	222, 391, 500, 649
FatI	CATG	4 cut(s)	218, 387, 496, 645
FauI	CCCGC	1 cut(s)	512
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	5 cut(s)	258, 293, 410, 488, 552
GluI	GCNGC	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	142, 712
HapII	CCGG	1 cut(s)	139
Hin1II	CATG	4 cut(s)	222, 391, 500, 649
HinfI	GANTC	2 cut(s)	449, 571
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	1 cut(s)	704
Hpy188I	TCNGA	5 cut(s)	21, 230, 454, 481, 615
Hpy188III	TCNNGA	3 cut(s)	131, 180, 703
HpyAV	CCTTC	5 cut(s)	34, 177, 272, 370, 702
HpyCH4III	ACNGT	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	447, 587
Hsp92II	CATG	4 cut(s)	222, 391, 500, 649
KpnI	GGTACC	1 cut(s)	504
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	54, 72, 202, 351
LmnI	GCTCC	2 cut(s)	231, 673
LpnPI	CCDG	9 cut(s)	96, 152, 193, 367, 536, 560, 650, 677, 688
Lsp1109I	GCAGC	1 cut(s)	75
MaeI	CTAG	5 cut(s)	258, 293, 410, 488, 552
MaeIII	GTNAC	3 cut(s)	283, 342, 534
MalI	GATC	4 cut(s)	56, 74, 204, 353
MboI	GATC	4 cut(s)	54, 72, 202, 351
MboII	GAAGA	2 cut(s)	160, 249
MfeI	CAATTG	2 cut(s)	508, 603
MflI	RGATCY	1 cut(s)	72
MluCI	AATT	6 cut(s)	300, 327, 461, 508, 603, 635
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	4 cut(s)	44, 82, 432, 638
MnlI	CCTC	3 cut(s)	153, 409, 618
MseI	TTAA	1 cut(s)	660
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	139, 665
MunI	CAATTG	2 cut(s)	508, 603
MvaI	CCWGG	1 cut(s)	665
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	4 cut(s)	54, 72, 202, 351
NlaIII	CATG	4 cut(s)	222, 391, 500, 649
NlaIV	GGNNCC	2 cut(s)	502, 675
NmuCI	GTSAC	1 cut(s)	342
NspI	RCATGY	1 cut(s)	222
PciI	ACATGT	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	571
PflFI	GACNNNGTC	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	90
Ple19I	CGATCG	1 cut(s)	57
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PscI	ACATGT	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	2 cut(s)	502, 675
PspPI	GGNCC	2 cut(s)	17, 711
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	383
PvuI	CGATCG	1 cut(s)	57
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	4 cut(s)	54, 72, 202, 351
Sau96I	GGNCC	2 cut(s)	17, 711
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	2 cut(s)	139, 665
SinI	GGWCC	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	487
Sse9I	AATT	6 cut(s)	300, 327, 461, 508, 603, 635
SsiI	CCGC	1 cut(s)	505
SspI	AATATT	1 cut(s)	545
SspMI	CTAG	5 cut(s)	258, 293, 410, 488, 552
StyD4I	CCNGG	2 cut(s)	137, 663
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	32, 350
TasI	AATT	6 cut(s)	300, 327, 461, 508, 603, 635
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	1 cut(s)	694
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	5 cut(s)	17, 239, 485, 498, 644
TspRI	CASTG	1 cut(s)	694
Tth111I	GACNNNGTC	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	668
XapI	RAATTY	2 cut(s)	300, 635
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	5 cut(s)	258, 293, 410, 488, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.