Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000673

Physical Location & Seq

Genomic Coordinates Forward (+)

31687201 .. 31687845

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG289200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAAGAAAAATTCTAACAGAAAGAAAAACTCGTGTGATCAAACTCGAGCAGATCGTACCCCTCCAATCCGTTCAAACCATCGTTGTTGGTCTGATCTTCCAGTTGACCTGTCAAGATCAGTGGCTGAACGTCTCATATATCCTGATTTTCTTCGCTTTCGTGCCGTATGCAAAAACTGGCAGCGAGCTTTTTCCGACGACGATGACCTTCAGCGACGTGCAGTATTTCCTTTGATACGGGTTGACAGTTCTCATTACTTCCACTATACCAAAACCCAAACCGTTTGTACAGCGCGCTTCTTTGATTTGTTGTCCCCATTACAAGTCTTCCCTATCAGAAACGTGGTAAAAGAACAAGAACAAGTGCAAAAAGAGGACCTCGTTTATCCAAGCTTTTGTTGTTCGTACTCCGGTTGGTTGCTGTTGTTAAAATCAGATCCCTCAGATTACTATAAAGAGATAAAGTCCAGACTCTTTGTTCATAATCCTTTTCGCAGCGAGACTGTGGAATTGCATCTGCCTCCATCAGCTTCTCGACCACTCCAACTTCTCTGGATTGTGTTATCTTTCTCCTGTGGAAAATTCATAAATGCAATGGATATGATTCTGATCCTAATTACGAGGAGTGGAATGAGTTCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

214

Amino Acids

25.09

Weight (kDa)

9.31

Isoelectric Point (pI)

63.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	30 - 68	6.6e-07	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26661 FvH4_2g26662 FvH4_3g21700 FvH4_3g21711 FvH4_3g21801 FvH4_4g17781 FvH4_4g20671 FvH4_5g08112 FvH4_5g19010
pyrus_communis	pycom11g20050 pycom12g20870
rosa_chinensis	RchiOBHm_Chr3g0473991 RchiOBHm_Chr6g0295501
rosa_laevigata	RLG00000011844 RLG00000011846 RLG00000011847 RLG00000023960 RLG00000025447 RLG00000025455 RLG00000027507 RLG00000029040 RLG00000033754 RLG00000033763 RLG00000033780 RLG00000033784
rosa_multiflora	Rmu_co8461177.1_g000001 Rmu_sc0000006.1_g000007 Rmu_sc0000475.1_g000005 Rmu_sc0001331.1_g000009 Rmu_sc0001576.1_g000022 Rmu_sc0002271.1_g000033 Rmu_sc0002414.1_g000009 Rmu_sc0002521.1_g000001 Rmu_sc0003170.1_g000006 Rmu_sc0003854.1_g000002 Rmu_sc0004190.1_g000002 Rmu_sc0005137.1_g000016 Rmu_sc0006633.1_g000002 Rmu_sc0012290.1_g000003 Rmu_sc0022254.1_g000001 Rmu_sc0027615.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043510 Rroxscaffold_1G00043580 Rroxscaffold_1G00043780 Rroxscaffold_3G00266190 Rroxscaffold_4G00311360 Rroxscaffold_5G00368090 Rroxscaffold_6G00407580 Rroxscaffold_6G00425070 Rroxscaffold_6G00425130 Rroxscaffold_7G00173050
rosa_rugosa	Rorug02G0654500 Rorug04G0209000
rosa_samantha	Rh1AG322000 Rh1BG144900 Rh2CG355900 Rh3BG060900 Rh3BG216400 Rh3DG212200 Rh4CG284500 Rh5AG254200 Rh5BG255100 Rh5BG256200 Rh5CG287800 Rh5CG289200 Rh5CG289300 Rh6AG364700 Rh6BG366800 Rh6DG360500 Rh7AG097700 Rh7BG098700 Rh7CG099600
rosa_wichuraiana	Rw3G004540 Rw5G023530 Rw6G031400 Rw6G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	643
AccII	CGCG	1 cut(s)	295
AclWI	GGATC	2 cut(s)	431, 604
AcsI	RAATTY	2 cut(s)	10, 581
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	3 cut(s)	58, 289, 407
AgsI	TTSAA	1 cut(s)	75
AjiI	CACGTC	1 cut(s)	218
AluBI	AGCT	3 cut(s)	188, 393, 530
AluI	AGCT	3 cut(s)	188, 393, 530
Alw26I	GTCTC	2 cut(s)	137, 494
AlwI	GGATC	2 cut(s)	431, 604
AlwNI	CAGNNNCTG	1 cut(s)	125
Ama87I	CYCGRG	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	181, 495
ApoI	RAATTY	2 cut(s)	10, 581
Asp700I	GAANNNNTTC	1 cut(s)	634
AspLEI	GCGC	2 cut(s)	295, 297
AspS9I	GGNCC	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	376
BauI	CACGAG	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	193, 507
BccI	CCATC	2 cut(s)	87, 532
BceAI	ACGGC	1 cut(s)	149
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	137, 494
BisI	GCNGC	2 cut(s)	182, 496
BlsI	GCNGC	2 cut(s)	183, 497
Bme18I	GGWCC	1 cut(s)	376
BmeT110I	CYCGRG	1 cut(s)	45
BmgBI	CACGTC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	376
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	608
BsaWI	WCCGGW	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	101, 182
Bse3DI	GCAATG	1 cut(s)	600
Bse8I	GATNNNNATC	1 cut(s)	608
BseJI	GATNNNNATC	1 cut(s)	608
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	2 cut(s)	101, 182
BsePI	GCGCGC	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	637
BseXI	GCAGC	2 cut(s)	193, 507
BsgI	GTGCAG	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	411
BslFI	GGGAC	1 cut(s)	298
BsmAI	GTCTC	2 cut(s)	137, 494
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	298
BsoBI	CYCGRG	1 cut(s)	45
Bsp1407I	TGTACA	1 cut(s)	287
Bsp143I	GATC	6 cut(s)	37, 52, 94, 116, 436, 609
BspCNI	CTCAG	1 cut(s)	455
BspFNI	CGCG	1 cut(s)	295
BspPI	GGATC	2 cut(s)	431, 604
BsrDI	GCAATG	1 cut(s)	600
BsrGI	TGTACA	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	101, 182
BssHII	GCGCGC	1 cut(s)	293
BssMI	GATC	6 cut(s)	37, 52, 94, 116, 436, 609
BssSI	CACGAG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	31
Bst4CI	ACNGT	3 cut(s)	248, 283, 505
BstAUI	TGTACA	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	186, 295
BstDEI	CTNAG	1 cut(s)	442
BstFNI	CGCG	1 cut(s)	295
BstHHI	GCGC	2 cut(s)	295, 297
BstKTI	GATC	6 cut(s)	40, 55, 97, 119, 439, 612
BstMAI	GTCTC	2 cut(s)	137, 494
BstMBI	GATC	6 cut(s)	37, 52, 94, 116, 436, 609
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	193, 507
BstV2I	GAAGAC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BtrI	CACGTC	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	186, 295
CaiI	CAGNNNCTG	1 cut(s)	125
CfoI	GCGC	2 cut(s)	295, 297
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	57, 288, 406
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviJI	RGCY	4 cut(s)	125, 188, 393, 530
CviKI_1	RGCY	4 cut(s)	125, 188, 393, 530
CviQI	GTAC	3 cut(s)	57, 288, 406
DdeI	CTNAG	1 cut(s)	442
DpnI	GATC	6 cut(s)	39, 54, 96, 118, 438, 611
DpnII	GATC	6 cut(s)	37, 52, 94, 116, 436, 609
Eco47I	GGWCC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	376
Esp3I	CGTCTC	1 cut(s)	137
FaiI	YATR	9 cut(s)	137, 139, 169, 267, 453, 483, 587, 602, 643
FaqI	GGGAC	1 cut(s)	298
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	182, 496
Fsp4HI	GCNGC	2 cut(s)	182, 496
GlaI	GCGC	2 cut(s)	294, 296
GluI	GCNGC	2 cut(s)	182, 496
HapII	CCGG	1 cut(s)	411
HhaI	GCGC	2 cut(s)	295, 297
Hin6I	GCGC	2 cut(s)	293, 295
HinP1I	GCGC	2 cut(s)	293, 295
HincII	GTYRAC	2 cut(s)	106, 244
HindII	GTYRAC	2 cut(s)	106, 244
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	2 cut(s)	471, 604
HpaII	CCGG	1 cut(s)	411
Hpy166II	GTNNAC	2 cut(s)	106, 244
Hpy188I	TCNGA	6 cut(s)	94, 196, 338, 436, 445, 609
Hpy188III	TCNNGA	5 cut(s)	114, 143, 468, 534, 553
Hpy8I	GTNNAC	2 cut(s)	106, 244
Hpy99I	CGWCG	3 cut(s)	200, 203, 219
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	3 cut(s)	248, 283, 505
HpyCH4IV	ACGT	3 cut(s)	130, 217, 342
HpyCH4V	TGCA	5 cut(s)	171, 221, 367, 514, 593
HpyF3I	CTNAG	1 cut(s)	442
HpySE526I	ACGT	3 cut(s)	130, 217, 342
HspAI	GCGC	2 cut(s)	293, 295
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	6 cut(s)	37, 52, 94, 116, 436, 609
LpnPI	CCDG	8 cut(s)	114, 122, 156, 163, 424, 481, 538, 586
Lsp1109I	GCAGC	2 cut(s)	193, 507
LweI	GCATC	1 cut(s)	523
MaeII	ACGT	3 cut(s)	130, 217, 342
MalI	GATC	6 cut(s)	39, 54, 96, 118, 438, 611
MboI	GATC	6 cut(s)	37, 52, 94, 116, 436, 609
MboII	GAAGA	4 cut(s)	16, 89, 143, 319
MflI	RGATCY	1 cut(s)	436
MluCI	AATT	4 cut(s)	10, 509, 581, 615
MlyI	GAGTC	1 cut(s)	465
MmeI	TCCRAC	2 cut(s)	219, 568
MnlI	CCTC	6 cut(s)	72, 367, 389, 451, 531, 615
MroXI	GAANNNNTTC	1 cut(s)	634
MseI	TTAA	1 cut(s)	428
MspI	CCGG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	295
NdeII	GATC	6 cut(s)	37, 52, 94, 116, 436, 609
PaeR7I	CTCGAG	1 cut(s)	45
PauI	GCGCGC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	634
PfeI	GAWTC	1 cut(s)	604
PkrI	GCNGC	2 cut(s)	183, 497
PleI	GAGTC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	465
PpuMI	RGGWCCY	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	643
Psp5II	RGGWCCY	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	376
PspPPI	RGGWCCY	1 cut(s)	376
PspXI	VCTCGAGB	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	436
PteI	GCGCGC	1 cut(s)	293
RsaI	GTAC	3 cut(s)	58, 289, 407
RsaNI	GTAC	3 cut(s)	57, 288, 406
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	2 cut(s)	182, 496
Sau3AI	GATC	6 cut(s)	37, 52, 94, 116, 436, 609
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	465
SetI	ASST	9 cut(s)	111, 133, 190, 210, 220, 345, 381, 395, 532
SfaNI	GCATC	1 cut(s)	523
Sfr274I	CTCGAG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	4 cut(s)	10, 509, 581, 615
TaaI	ACNGT	3 cut(s)	248, 283, 505
TaiI	ACGT	3 cut(s)	133, 220, 345
TaqI	TCGA	2 cut(s)	46, 535
TasI	AATT	4 cut(s)	10, 509, 581, 615
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	604
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	2 cut(s)	181, 495
TspDTI	ATGAA	3 cut(s)	17, 470, 574
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	2 cut(s)	10, 581
XhoI	CTCGAG	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.