Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0000673

Physical Location & Seq

Genomic Coordinates Reverse (-)

22201724 .. 22202926

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCAAATAATTTATGGTCCGATCTTCCGATTCCGATCTTAAACCTAATCACTGAACGTCTTCCGCACTATGATTTTGTTCGTTCTGCTGCGGTATGCACGACTTGGCAGCAAGCTTTTCATGATGGGGTTCAAGCTCGATGCAAAAACCCTAGTACATGGGTAATGAACCATGGCTGCTTCAATCATGACGGAGAAATCTTCAGCATACTGGAGCTCTCTGATCCTTCGACCAAACAAACTTACTGCATCGGAGATATCATAACACAAGAAGTTAGAGAATTATTCGTGGACGCGAAACCTTGTGCATCAAGATATGGTTGGCTGCTTCTCACAAAAAAGGTAAAAGTAGAAGATGGTAGTTCAACTAAGTTCTTTTTCTATAATCCTTTCAAGAATAAGGTTATTGAACTATCTTCTCCCTTGATTTTGACCAACAAAATCGCTCGACATAAAGCCACATTCACGGCTTCTCCAACTACTTCTCGTGGCGATTGTGCTGTTTTTGTTGTTTCTAAAATATATAATCATGTTTATGTCCTAAGTACATATAAACTCGCGGATAGAGCCTGGAGAACTATATATATAACAGATCGTATTCTTCCAGCTGAATATGTTCTTGATGTGAAGGCAAAGGAGTTGGTCTACATGGACGGAATTTTATTTTGTACTTTTCATTCAAAGTCATCACATACCACTTTATTGGGTGCCTTTAATGTTGCACTTGAAGCTTGGGACATGATTGATTGCTCCGTTTTTGCAAACAAAATCAGGTGCGGTGGATGCAAAAACTGTTACGGTACGTCCCTATACATTTACTACTTGGTTGAAGTTCCTTTTAGTAAGGTCTATTTGGTTGCTCAGCAAGATTACTATCATGAATGGCATGCTTTCGAATATGATGGATCAGATAATAAATGGTTTGAGGTTGAGAGCTTCATAAAAACATTCGAAAATCAAGCACTATTTATCAAAAGGTCATCATCAGTTGCAATTGAGGAGTTTTCGGATGAAATTAAAGGAGTGGTCGCTGGTAAATATTCCATAAATTGGCTAATTTGTGGTTTCAAAACAAATTGTAAACCAGCATGTGACATATTCAAAGAATTTGCTTGCCGTGGTGATTATCTTACACAAAGTTTGATTCAACTTGTTCCGGAGGTCAGCATTATTCATAAGCATGCCCATGATGATGATACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

401

Amino Acids

45.76

Weight (kDa)

6.36

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	92 - 334	3.3e-13	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26661 FvH4_2g26662 FvH4_3g21700 FvH4_3g21711 FvH4_3g21801 FvH4_4g17781 FvH4_4g20671 FvH4_5g08112 FvH4_5g19010
pyrus_communis	pycom11g20050 pycom12g20870
rosa_chinensis	RchiOBHm_Chr3g0473991 RchiOBHm_Chr6g0295501
rosa_laevigata	RLG00000011844 RLG00000011846 RLG00000011847 RLG00000023960 RLG00000025447 RLG00000025455 RLG00000027507 RLG00000029040 RLG00000033754 RLG00000033763 RLG00000033780 RLG00000033784
rosa_multiflora	Rmu_co8461177.1_g000001 Rmu_sc0000006.1_g000007 Rmu_sc0000475.1_g000005 Rmu_sc0001331.1_g000009 Rmu_sc0001576.1_g000022 Rmu_sc0002271.1_g000033 Rmu_sc0002414.1_g000009 Rmu_sc0002521.1_g000001 Rmu_sc0003170.1_g000006 Rmu_sc0003854.1_g000002 Rmu_sc0004190.1_g000002 Rmu_sc0005137.1_g000016 Rmu_sc0006633.1_g000002 Rmu_sc0012290.1_g000003 Rmu_sc0022254.1_g000001 Rmu_sc0027615.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043510 Rroxscaffold_1G00043580 Rroxscaffold_1G00043780 Rroxscaffold_3G00266190 Rroxscaffold_4G00311360 Rroxscaffold_5G00368090 Rroxscaffold_6G00407580 Rroxscaffold_6G00425070 Rroxscaffold_6G00425130 Rroxscaffold_7G00173050
rosa_rugosa	Rorug02G0654500 Rorug04G0209000
rosa_samantha	Rh1AG322000 Rh1BG144900 Rh2CG355900 Rh3BG060900 Rh3BG216400 Rh3DG212200 Rh4CG284500 Rh5AG254200 Rh5BG255100 Rh5BG256200 Rh5CG287800 Rh5CG289200 Rh5CG289300 Rh6AG364700 Rh6BG366800 Rh6DG360500 Rh7AG097700 Rh7BG098700 Rh7CG099600
rosa_wichuraiana	Rw3G004540 Rw5G023530 Rw6G031400 Rw6G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	707
AccB7I	CCANNNNNTGG	1 cut(s)	1050
AccI	GTMKAC	1 cut(s)	645
AccII	CGCG	2 cut(s)	296, 560
AccIII	TCCGGA	1 cut(s)	1156
AciI	CCGC	4 cut(s)	65, 92, 560, 777
AclWI	GGATC	2 cut(s)	218, 913
AcsI	RAATTY	2 cut(s)	657, 1106
AcuI	CTGAAG	1 cut(s)	187
AfaI	GTAC	4 cut(s)	157, 547, 670, 802
AfiI	CCNNNNNNNGG	1 cut(s)	1050
AjnI	CCWGG	1 cut(s)	569
AluBI	AGCT	6 cut(s)	116, 137, 217, 608, 731, 936
AluI	AGCT	6 cut(s)	116, 137, 217, 608, 731, 936
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	218, 913
Aor13HI	TCCGGA	1 cut(s)	1156
ApeKI	GCWGC	4 cut(s)	89, 109, 177, 325
ApoI	RAATTY	2 cut(s)	657, 1106
Asp700I	GAANNNNTTC	2 cut(s)	60, 615
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	1133
AsuII	TTCGAA	2 cut(s)	894, 951
AvaII	GGWCC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	707
BanII	GRGCYC	1 cut(s)	219
BauI	CACGAG	1 cut(s)	486
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	4 cut(s)	76, 121, 164, 312
BccI	CCATC	3 cut(s)	119, 350, 896
BceAI	ACGGC	2 cut(s)	483, 1101
BciT130I	CCWGG	1 cut(s)	571
BfaI	CTAG	1 cut(s)	153
BisI	GCNGC	4 cut(s)	90, 110, 178, 326
BlpI	GCTNAGC	1 cut(s)	861
BlsI	GCNGC	4 cut(s)	91, 111, 179, 327
Bme1390I	CCNGG	1 cut(s)	571
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	709
BmrFI	CCNGG	1 cut(s)	571
BmsI	GCATC	4 cut(s)	131, 258, 317, 773
BpiI	GAAGAC	1 cut(s)	53
BpmI	CTGGAG	2 cut(s)	233, 592
Bpu1102I	GCTNAGC	1 cut(s)	861
Bpu14I	TTCGAA	2 cut(s)	894, 951
BsaBI	GATNNNNATC	2 cut(s)	35, 873
BsaJI	CCNNGG	2 cut(s)	172, 1117
BsaWI	WCCGGW	1 cut(s)	1156
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	1050
Bse1I	ACTGG	1 cut(s)	216
Bse8I	GATNNNNATC	2 cut(s)	35, 873
BseAI	TCCGGA	1 cut(s)	1156
BseBI	CCWGG	1 cut(s)	571
BseDI	CCNNGG	2 cut(s)	172, 1117
BseGI	GGATG	2 cut(s)	788, 1015
BseJI	GATNNNNATC	2 cut(s)	35, 873
BseLI	CCNNNNNNNGG	1 cut(s)	1050
BseMII	CTCAG	1 cut(s)	875
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	1013
BseXI	GCAGC	4 cut(s)	76, 121, 164, 312
Bsh1236I	CGCG	2 cut(s)	296, 560
BshNI	GGYRCC	1 cut(s)	707
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	1157
BslFI	GGGAC	2 cut(s)	749, 790
BslI	CCNNNNNNNGG	1 cut(s)	1050
BsmFI	GGGAC	2 cut(s)	749, 790
Bsp119I	TTCGAA	2 cut(s)	894, 951
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp13I	TCCGGA	1 cut(s)	1156
Bsp143I	GATC	5 cut(s)	22, 36, 223, 592, 905
Bsp1720I	GCTNAGC	1 cut(s)	861
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	4 cut(s)	65, 92, 560, 777
BspCNI	CTCAG	1 cut(s)	874
BspEI	TCCGGA	1 cut(s)	1156
BspFNI	CGCG	2 cut(s)	296, 560
BspHI	TCATGA	3 cut(s)	121, 187, 877
BspLI	GGNNCC	1 cut(s)	709
BspPI	GGATC	2 cut(s)	218, 913
BspT104I	TTCGAA	2 cut(s)	894, 951
BspT107I	GGYRCC	1 cut(s)	707
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	172, 1117
BssMI	GATC	5 cut(s)	22, 36, 223, 592, 905
BssSI	CACGAG	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	2 cut(s)	794, 800
BstBI	TTCGAA	2 cut(s)	894, 951
BstC8I	GCNNGC	4 cut(s)	114, 888, 1114, 1182
BstDEI	CTNAG	4 cut(s)	369, 542, 861, 1200
BstDSI	CCRYGG	2 cut(s)	172, 1117
BstF5I	GGATG	2 cut(s)	788, 1015
BstFNI	CGCG	2 cut(s)	296, 560
BstKTI	GATC	5 cut(s)	25, 39, 226, 595, 908
BstMBI	GATC	5 cut(s)	22, 36, 223, 592, 905
BstMWI	GCNNNNNNNGC	3 cut(s)	566, 728, 783
BstNI	CCWGG	1 cut(s)	571
BstNSI	RCATGY	3 cut(s)	890, 1092, 1184
BstSCI	CCNGG	1 cut(s)	569
BstUI	CGCG	2 cut(s)	296, 560
BstV1I	GCAGC	4 cut(s)	76, 121, 164, 312
BstV2I	GAAGAC	1 cut(s)	53
BstXI	CCANNNNNNTGG	1 cut(s)	703
BtgI	CCRYGG	2 cut(s)	172, 1117
BtsCI	GGATG	2 cut(s)	788, 1015
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	4 cut(s)	114, 888, 1114, 1182
CciI	TCATGA	3 cut(s)	121, 187, 877
Cfr13I	GGNCC	1 cut(s)	18
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	4 cut(s)	156, 546, 669, 801
CviQI	GTAC	4 cut(s)	156, 546, 669, 801
DdeI	CTNAG	4 cut(s)	369, 542, 861, 1200
DpnI	GATC	5 cut(s)	24, 38, 225, 594, 907
DpnII	GATC	5 cut(s)	22, 36, 223, 592, 905
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	569
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	172
FaqI	GGGAC	2 cut(s)	749, 790
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	4 cut(s)	90, 110, 178, 326
FokI	GGATG	2 cut(s)	795, 1022
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	4 cut(s)	90, 110, 178, 326
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	4 cut(s)	90, 110, 178, 326
GsuI	CTGGAG	2 cut(s)	233, 592
HapII	CCGG	1 cut(s)	1157
HgaI	GACGC	1 cut(s)	302
HindIII	AAGCTT	2 cut(s)	114, 729
HinfI	GANTC	2 cut(s)	31, 1144
HpaII	CCGG	1 cut(s)	1157
HphI	GGTGA	1 cut(s)	1133
Hpy166II	GTNNAC	3 cut(s)	292, 646, 1082
Hpy188I	TCNGA	7 cut(s)	22, 30, 36, 223, 254, 910, 1009
Hpy188III	TCNNGA	7 cut(s)	122, 188, 312, 394, 620, 878, 1157
Hpy8I	GTNNAC	3 cut(s)	292, 646, 1082
HpyAV	CCTTC	2 cut(s)	237, 622
HpyCH4III	ACNGT	2 cut(s)	794, 800
HpyCH4IV	ACGT	2 cut(s)	58, 803
HpyCH4V	TGCA	8 cut(s)	99, 144, 249, 308, 722, 761, 786, 992
HpyF10VI	GCNNNNNNNGC	3 cut(s)	566, 728, 783
HpyF3I	CTNAG	4 cut(s)	369, 542, 861, 1200
HpySE526I	ACGT	2 cut(s)	58, 803
Kpn2I	TCCGGA	1 cut(s)	1156
Kzo9I	GATC	5 cut(s)	22, 36, 223, 592, 905
LmnI	GCTCC	2 cut(s)	214, 755
LpnPI	CCDG	8 cut(s)	197, 556, 583, 618, 757, 1017, 1098, 1170
Lsp1109I	GCAGC	4 cut(s)	76, 121, 164, 312
LweI	GCATC	4 cut(s)	131, 258, 317, 773
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	2 cut(s)	58, 803
MaeIII	GTNAC	2 cut(s)	794, 1091
MalI	GATC	5 cut(s)	24, 38, 225, 594, 907
MboI	GATC	5 cut(s)	22, 36, 223, 592, 905
MboII	GAAGA	6 cut(s)	17, 53, 193, 365, 408, 593
MfeI	CAATTG	1 cut(s)	993
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	9 cut(s)	10, 281, 657, 993, 1014, 1048, 1056, 1075, 1106
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	3 cut(s)	919, 991, 1153
MroI	TCCGGA	1 cut(s)	1156
MroXI	GAANNNNTTC	2 cut(s)	60, 615
MseI	TTAA	3 cut(s)	41, 714, 1017
MslI	CAYNNNNRTG	4 cut(s)	534, 1179, 1185, 1191
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	1157
MspR9I	CCNGG	1 cut(s)	571
MunI	CAATTG	1 cut(s)	993
MvaI	CCWGG	1 cut(s)	571
MvnI	CGCG	2 cut(s)	296, 560
MwoI	GCNNNNNNNGC	3 cut(s)	566, 728, 783
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	5 cut(s)	22, 36, 223, 592, 905
NlaIV	GGNNCC	1 cut(s)	709
NmuCI	GTSAC	1 cut(s)	1091
NspI	RCATGY	3 cut(s)	890, 1092, 1184
NspV	TTCGAA	2 cut(s)	894, 951
PaeI	GCATGC	2 cut(s)	890, 1184
PagI	TCATGA	3 cut(s)	121, 187, 877
PdmI	GAANNNNTTC	2 cut(s)	60, 615
PfeI	GAWTC	2 cut(s)	31, 1144
PflMI	CCANNNNNTGG	1 cut(s)	1050
PkrI	GCNGC	4 cut(s)	91, 111, 179, 327
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	569
PspN4I	GGNNCC	1 cut(s)	709
PspPI	GGNCC	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	4 cut(s)	157, 547, 670, 802
RsaNI	GTAC	4 cut(s)	156, 546, 669, 801
RseI	CAYNNNNRTG	4 cut(s)	534, 1179, 1185, 1191
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	41, 714, 1017
SatI	GCNGC	4 cut(s)	90, 110, 178, 326
Sau3AI	GATC	5 cut(s)	22, 36, 223, 592, 905
Sau96I	GGNCC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	571
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	4 cut(s)	131, 258, 317, 773
SfuI	TTCGAA	2 cut(s)	894, 951
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	4 cut(s)	534, 1179, 1185, 1191
SphI	GCATGC	2 cut(s)	890, 1184
Sse9I	AATT	9 cut(s)	10, 281, 657, 993, 1014, 1048, 1056, 1075, 1106
SsiI	CCGC	4 cut(s)	65, 92, 560, 777
SspI	AATATT	1 cut(s)	1040
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	569
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	794, 800
TaiI	ACGT	2 cut(s)	61, 806
TaqI	TCGA	5 cut(s)	139, 230, 448, 894, 951
TasI	AATT	9 cut(s)	10, 281, 657, 993, 1014, 1048, 1056, 1075, 1106
TatI	WGTACW	3 cut(s)	155, 545, 668
TfiI	GAWTC	2 cut(s)	31, 1144
Tru1I	TTAA	3 cut(s)	41, 714, 1017
Tru9I	TTAA	3 cut(s)	41, 714, 1017
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	1091
TseI	GCWGC	4 cut(s)	89, 109, 177, 325
Tsp45I	GTSAC	1 cut(s)	1091
TspDTI	ATGAA	7 cut(s)	110, 182, 665, 894, 928, 1026, 1163
TspGWI	ACGGA	3 cut(s)	207, 669, 742
TspRI	CASTG	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	1050
VpaK11BI	GGWCC	1 cut(s)	18
XapI	RAATTY	2 cut(s)	657, 1106
XceI	RCATGY	3 cut(s)	890, 1092, 1184
XmiI	GTMKAC	1 cut(s)	645
XmnI	GAANNNNTTC	2 cut(s)	60, 615
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.