RLG00000033763

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000673
Physical Location & Seq
Reverse (-)
31863492 .. 31864697
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033763

Sequence Viewer

Length: 561 bp
ATGGAGGGTTTAGGCGTCGTATGCAAAAAATGGCAGCTAGCTATTCCCGACGACCGACGTGTAATACTATTGCAGGGCCGCTGTTACAGCCTTAAGCGCCACCTCGGTGCTATTGAAACCTACTGTGAAGCCAGAGTTCCCCGTTTTGAAAGATTAAGGAGGCCCTGCATCGTTCCCTGTTTTGACTGTGAAATCCGGGATGTGGTTTATGCGGATGGAATTTTATATGTTCTTGTTGTTGTTATCAACTCGTCGGAAATTATATTGGGAACCTTCGATGCAGCATTTCAACAGTGGGTTCTAATGGACAATCACACCTCCACCCTCAAACTACCATATAGTCCAAAACATCTTTACTTTGTTCAATCTGATGGGGAGCTCTTATTGGCCGTTTATCATCGAGAGCAAGGTTGTGGTGTATTTTTGTGCCCGGAGGTTTATTGTTTTGATTATTTGTCACAAAAGAATTGGACAAGACTTGATACTTTAGGAGGCCGCATGAGTTCTGATTTTAAGTCCCTCATCATCAATTTTGACTCCAGTAGTTGGGGCTATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.46

Weight (kDa)

6.87

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 546
AciI CCGC 3 cut(s) 79, 212, 496
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 15
AfiI CCNNNNNNNGG 2 cut(s) 202, 546
AflII CTTAAG 1 cut(s) 92
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 4 cut(s) 116, 149, 290, 365
AjiI CACGTC 1 cut(s) 59
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 3 cut(s) 37, 41, 379
AluI AGCT 3 cut(s) 37, 41, 379
Alw21I GWGCWC 1 cut(s) 381
AoxI GGCC 4 cut(s) 76, 161, 387, 493
ApeKI GCWGC 2 cut(s) 34, 281
ApoI RAATTY 1 cut(s) 219
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 76, 162
AsuC2I CCSGG 2 cut(s) 197, 431
AsuNHI GCTAGC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 46, 293
BccI CCATC 2 cut(s) 209, 365
BceAI ACGGC 1 cut(s) 374
BcnI CCSGG 2 cut(s) 197, 431
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 100
BfrI CTTAAG 1 cut(s) 92
BisI GCNGC 4 cut(s) 35, 79, 282, 496
BlsI GCNGC 4 cut(s) 36, 80, 283, 497
Bme1390I CCNGG 2 cut(s) 197, 431
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 76, 162
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 2 cut(s) 197, 431
BmsI GCATC 2 cut(s) 177, 268
BmtI GCTAGC 1 cut(s) 41
BpmI CTGGAG 1 cut(s) 523
BpuMI CCSGG 2 cut(s) 197, 431
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 546
Bse1I ACTGG 1 cut(s) 540
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 2 cut(s) 205, 220
BseLI CCNNNNNNNGG 2 cut(s) 202, 546
BseNI ACTGG 1 cut(s) 540
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 2 cut(s) 46, 293
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 4 cut(s) 78, 163, 389, 495
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 2 cut(s) 196, 431
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 2 cut(s) 202, 546
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 4 cut(s) 78, 163, 389, 495
Bsp1286I GDGCHC 2 cut(s) 381, 431
BspACI CCGC 3 cut(s) 79, 212, 496
BspANI GGCC 4 cut(s) 78, 163, 389, 495
BspLI GGNNCC 1 cut(s) 271
BspOI GCTAGC 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 92
BsrI ACTGG 1 cut(s) 540
BssECI CCNNGG 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 15
Bst4CI ACNGT 3 cut(s) 125, 188, 294
BstACI GRCGYC 1 cut(s) 15
BstAFI CTTAAG 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 39
BstF5I GGATG 2 cut(s) 205, 220
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 3 cut(s) 21, 87, 96
BstSCI CCNGG 2 cut(s) 195, 429
BstSLI GKGCMC 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 46, 293
BsuRI GGCC 4 cut(s) 78, 163, 389, 495
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 2 cut(s) 205, 220
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 76, 162
CseI GACGC 1 cut(s) 4
CviAII CATG 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 381
FaeI CATG 1 cut(s) 502
FaiI YATR 9 cut(s) 22, 210, 226, 228, 263, 337, 339, 500, 555
FaqI GGGAC 1 cut(s) 502
FatI CATG 1 cut(s) 498
Fnu4HI GCNGC 4 cut(s) 35, 79, 282, 496
FokI GGATG 2 cut(s) 212, 227
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 4 cut(s) 35, 79, 282, 496
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 98
GluI GCNGC 4 cut(s) 35, 79, 282, 496
GsuI CTGGAG 1 cut(s) 523
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 4 cut(s) 78, 163, 389, 495
HapII CCGG 2 cut(s) 196, 431
HgaI GACGC 1 cut(s) 4
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 1 cut(s) 502
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 1 cut(s) 536
HpaII CCGG 2 cut(s) 196, 431
Hpy188I TCNGA 3 cut(s) 256, 370, 508
Hpy188III TCNNGA 2 cut(s) 47, 401
Hpy99I CGWCG 4 cut(s) 20, 53, 60, 256
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 3 cut(s) 125, 188, 294
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 24, 73, 168, 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 87, 96
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 502
HspAI GCGC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 7 cut(s) 59, 145, 178, 190, 209, 444, 553
Lsp1109I GCAGC 2 cut(s) 46, 293
LweI GCATC 2 cut(s) 177, 268
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 83, 456
MhlI GDGCHC 2 cut(s) 381, 431
MluCI AATT 4 cut(s) 219, 258, 466, 529
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 7 cut(s) 113, 153, 328, 335, 427, 485, 530
MseI TTAA 3 cut(s) 93, 155, 513
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 81
MspCI CTTAAG 1 cut(s) 92
MspI CCGG 2 cut(s) 196, 431
MspR9I CCNGG 2 cut(s) 197, 431
MwoI GCNNNNNNNGC 3 cut(s) 21, 87, 96
NciI CCSGG 2 cut(s) 197, 431
NheI GCTAGC 1 cut(s) 37
NlaIII CATG 1 cut(s) 502
NlaIV GGNNCC 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 456
OliI CACNNNNGTG 1 cut(s) 105
PflMI CCANNNNNTGG 1 cut(s) 546
PfoI TCCNGGA 1 cut(s) 195
PkrI GCNGC 4 cut(s) 36, 80, 283, 497
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
Psp124BI GAGCTC 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 2 cut(s) 76, 162
RseI CAYNNNNRTG 1 cut(s) 105
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 3 cut(s) 93, 155, 513
SatI GCNGC 4 cut(s) 35, 79, 282, 496
Sau96I GGNCC 2 cut(s) 76, 162
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 2 cut(s) 197, 431
SduI GDGCHC 2 cut(s) 381, 431
SfaNI GCATC 2 cut(s) 177, 268
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 4 cut(s) 219, 258, 466, 529
SsiI CCGC 3 cut(s) 79, 212, 496
SspMI CTAG 1 cut(s) 38
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 2 cut(s) 195, 429
TaaI ACNGT 3 cut(s) 125, 188, 294
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 276, 400
TaqII GACCGA 1 cut(s) 69
TasI AATT 4 cut(s) 219, 258, 466, 529
TauI GCSGC 2 cut(s) 81, 498
Tru1I TTAA 3 cut(s) 93, 155, 513
Tru9I TTAA 3 cut(s) 93, 155, 513
TscAI CASTG 1 cut(s) 299
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 2 cut(s) 34, 281
Tsp45I GTSAC 1 cut(s) 456
TspRI CASTG 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 546
Vha464I CTTAAG 1 cut(s) 92
XapI RAATTY 1 cut(s) 219
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.