RLG00000027507

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000673
Physical Location & Seq
Reverse (-)
12282600 .. 12283256
657 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027507

Sequence Viewer

Length: 657 bp
ATGGTAATTCCGACTTTCGGGGCAGCTCCGACTTCTTCTAATTGTGTCATCTTTGTCATAACTGGAAGCTACATAGTAAACACATGTAAGCTTAGAGATAGAGAATGGAGCAGTTGTACAATTGATCTTCCTTCTTCCATTAACCCGTTTCGGGTTGATGTGACCTATATGGAAGGAACTTTTTACTGTGCTTTTGATGGGGGTGCATCATTATGGGTAGGTAAATTCAACGTTGCTCTTCAAGATTGGACTGCAATGGATGATTGTTATTCCCCCCTTTTAAACATCAACTCTGGCCTACCTTGCTTGAAGCTGGTCGAGTCTGATGGTGATCTCTTATTGGTGGTTCATAGTCATTTCGGGATGGCGGGACCCATATCTATTCTCCGGTTTGATTGGTCTCAGAATGTTTGGATTCGACTTAGAAACTTGGGGAAACGAGTGTTGTTTTGCTCGTGGTTAGGAGCATTTGCAATTCCAGCAGTGGGAGAGAGTAGTGAGTTTGCAAATATGATAATTTGGAGTTGGATGGCCAATGAATATTGTTGTATTTGTGATACTGAAGGAACTTGGTCTAAGAGTACTGATAAGTTTCGGAAATTACTTTCAAGTAACGGTAGGCAAGCTTGGATTGAACCCCTCTCGTTATGGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

219

Amino Acids

24.4

Weight (kDa)

5.14

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 8 - 161 1.8e-12 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 368
AclI AACGTT 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 2 cut(s) 118, 583
AfiI CCNNNNNNNGG 3 cut(s) 17, 151, 485
AflIII ACRYGT 1 cut(s) 83
AgsI TTSAA 5 cut(s) 229, 242, 310, 609, 635
AluBI AGCT 5 cut(s) 26, 69, 91, 313, 626
AluI AGCT 5 cut(s) 26, 69, 91, 313, 626
Alw26I GTCTC 1 cut(s) 405
AoxI GGCC 2 cut(s) 295, 531
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 341
AvaII GGWCC 1 cut(s) 371
BalI TGGCCA 1 cut(s) 533
BauI CACGAG 1 cut(s) 454
BbvI GCAGC 1 cut(s) 35
BccI CCATC 4 cut(s) 191, 320, 358, 523
BcoDI GTCTC 1 cut(s) 405
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BmcAI AGTACT 1 cut(s) 583
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 372, 373
BmsI GCATC 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 405
BsaWI WCCGGW 1 cut(s) 387
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 151, 485
Bse1I ACTGG 1 cut(s) 67
Bse3DI GCAATG 1 cut(s) 261
Bse8I GATNNNNATC 1 cut(s) 330
BseGI GGATG 3 cut(s) 265, 369, 534
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 3 cut(s) 17, 151, 485
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 2 cut(s) 297, 533
BsiSI CCGG 1 cut(s) 388
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 3 cut(s) 17, 151, 485
BsmAI GTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 297, 533
Bso31I GGTCTC 1 cut(s) 405
Bsp1407I TGTACA 1 cut(s) 116
Bsp143I GATC 2 cut(s) 124, 331
BspACI CCGC 1 cut(s) 368
BspANI GGCC 2 cut(s) 297, 533
BspCNI CTCAG 1 cut(s) 415
BspLI GGNNCC 2 cut(s) 372, 373
BspQI GCTCTTC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 116
BsrI ACTGG 1 cut(s) 67
BssMI GATC 2 cut(s) 124, 331
BssSI CACGAG 1 cut(s) 454
Bst2BI CACGAG 1 cut(s) 454
Bst4CI ACNGT 2 cut(s) 188, 617
Bst6I CTCTTC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 624
BstDEI CTNAG 4 cut(s) 92, 402, 422, 576
BstF5I GGATG 3 cut(s) 265, 369, 534
BstKTI GATC 2 cut(s) 127, 334
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 2 cut(s) 124, 331
BstMWI GCNNNNNNNGC 2 cut(s) 303, 479
BstNSI RCATGY 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 35
BsuRI GGCC 2 cut(s) 297, 533
BtsCI GGATG 3 cut(s) 265, 369, 534
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 1 cut(s) 624
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 2 cut(s) 117, 582
CviAII CATG 1 cut(s) 84
CviJI RGCY 7 cut(s) 26, 69, 91, 297, 313, 533, 626
CviKI_1 RGCY 7 cut(s) 26, 69, 91, 297, 313, 533, 626
CviQI GTAC 2 cut(s) 117, 582
DdeI CTNAG 4 cut(s) 92, 402, 422, 576
DpnI GATC 2 cut(s) 126, 333
DpnII GATC 2 cut(s) 124, 331
DraI TTTAAA 1 cut(s) 282
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 582
EcoO109I RGGNCCY 1 cut(s) 371
FaeI CATG 1 cut(s) 87
FaqI GGGAC 1 cut(s) 384
FatI CATG 1 cut(s) 83
FauI CCCGC 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 3 cut(s) 272, 376, 541
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 2 cut(s) 297, 533
HapII CCGG 1 cut(s) 388
Hin1II CATG 1 cut(s) 87
HindIII AAGCTT 2 cut(s) 89, 624
HinfI GANTC 2 cut(s) 320, 415
HpaII CCGG 1 cut(s) 388
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 5 cut(s) 12, 30, 325, 405, 597
Hpy188III TCNNGA 2 cut(s) 242, 361
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 141, 167, 557
HpyCH4III ACNGT 2 cut(s) 188, 617
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 206, 254, 473, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 479
HpyF3I CTNAG 4 cut(s) 92, 402, 422, 576
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 1 cut(s) 87
KflI GGGWCCC 1 cut(s) 371
Kzo9I GATC 2 cut(s) 124, 331
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 3 cut(s) 31, 108, 464
LpnPI CCDG 5 cut(s) 48, 279, 299, 401, 492
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 1 cut(s) 215
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 160, 611
MalI GATC 2 cut(s) 126, 333
MboI GATC 2 cut(s) 124, 331
MboII GAAGA 4 cut(s) 27, 119, 126, 230
MfeI CAATTG 1 cut(s) 120
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 7 cut(s) 6, 40, 120, 224, 474, 516, 599
MluNI TGGCCA 1 cut(s) 533
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 3 cut(s) 35, 53, 506
MnlI CCTC 1 cut(s) 650
Mox20I TGGCCA 1 cut(s) 533
MscI TGGCCA 1 cut(s) 533
MseI TTAA 2 cut(s) 141, 281
MslI CAYNNNNRTG 1 cut(s) 211
Msp20I TGGCCA 1 cut(s) 533
MspI CCGG 1 cut(s) 388
MunI CAATTG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 303, 479
NdeII GATC 2 cut(s) 124, 331
NlaIII CATG 1 cut(s) 87
NlaIV GGNNCC 2 cut(s) 372, 373
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 87
PciI ACATGT 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 650
PfeI GAWTC 1 cut(s) 415
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PpuMI RGGWCCY 1 cut(s) 371
PscI ACATGT 1 cut(s) 83
Psp1406I AACGTT 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 371
PspN4I GGNNCC 2 cut(s) 372, 373
PspPI GGNCC 1 cut(s) 371
PspPPI RGGWCCY 1 cut(s) 371
RsaI GTAC 2 cut(s) 118, 583
RsaNI GTAC 2 cut(s) 117, 582
RseI CAYNNNNRTG 1 cut(s) 211
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 141, 281
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 2 cut(s) 124, 331
Sau96I GGNCC 1 cut(s) 371
ScaI AGTACT 1 cut(s) 583
SchI GAGTC 1 cut(s) 329
SetI ASST 9 cut(s) 28, 71, 93, 167, 223, 234, 304, 315, 628
SfaNI GCATC 1 cut(s) 215
SinI GGWCC 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 211
Sse9I AATT 7 cut(s) 6, 40, 120, 224, 474, 516, 599
SsiI CCGC 1 cut(s) 368
SspI AATATT 1 cut(s) 542
TaaI ACNGT 2 cut(s) 188, 617
TaiI ACGT 1 cut(s) 234
TaqI TCGA 2 cut(s) 318, 418
TasI AATT 7 cut(s) 6, 40, 120, 224, 474, 516, 599
TatI WGTACW 2 cut(s) 116, 581
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 2 cut(s) 141, 281
Tru9I TTAA 2 cut(s) 141, 281
TscAI CASTG 1 cut(s) 489
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 338, 552
TspRI CASTG 1 cut(s) 489
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 1 cut(s) 224
XceI RCATGY 1 cut(s) 87
ZrmI AGTACT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.