Rh5BG255100

F-box kelch-repeat protein At1g57790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000673
Physical Location & Seq
Reverse (-)
31713479 .. 31714647
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG255100.1

Sequence Viewer

Length: 618 bp
ATGGAATTGGAACTGCCTCCATTTAGTTGCTCAAAGGTTCAGGTAGCAACCTTGACAACCACTCCAACTTCTCCCGATTGTATTATTTTTATCCTATGGAAAACCAATTTTAGTGTAATTAATATTTACAGTATTACAGCATATAACCAACGAGATAGAACATGGAGTATCTATAATATTCCACCTTACCGAGGCGGAATTAGAACCTCATTCTACATAGGTCTCCATTTGGATGGTGCAATCAGGGGCGTGGCTTGTGCGGATGGAATTTTCTATTTTCTTGTTGTTACCAACTCGTCGGAAATTATGTTGGGCACCTTCGATGCAGCACTTCAAAAGTGGGTTCTAAAGGACAAGCCCCGCTCCACACTGAAACTACCATATCGTCCGGTACATTTTTACCTGGTTAAATCTGATGGGGAGCTCTTATTGGCCGTCTATCATCAACAGCAAGGTAGTGGTGAACTTTTGTGCCCTGAGGTTTACCGGTTTGATTATTTGTCACAAAAGAATTGGACAAGAGTTAATAATTTAGGAGGCCGAGTTCGATTTCGACTCCCTCATGTTCGATTTCGACTCCAGCAGCAGTGGGGGTTACAAGTAAATTTGCAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

205

Amino Acids

23.66

Weight (kDa)

9.43

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 3 - 188 4.4e-11 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AccBSI CCGCTC 1 cut(s) 363
AciI CCGC 3 cut(s) 195, 260, 361
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 2 cut(s) 267, 604
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 1 cut(s) 191
AgeI ACCGGT 1 cut(s) 486
AgsI TTSAA 1 cut(s) 335
AjnI CCWGG 1 cut(s) 402
AloI GAACNNNNNNTCC 2 cut(s) 528, 560
AluBI AGCT 1 cut(s) 424
AluI AGCT 1 cut(s) 424
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 227
AoxI GGCC 2 cut(s) 432, 538
ApeKI GCWGC 2 cut(s) 326, 583
ApoI RAATTY 2 cut(s) 267, 604
AseI ATTAAT 1 cut(s) 120
AsiGI ACCGGT 1 cut(s) 486
AsuHPI GGTGA 1 cut(s) 473
AxyI CCTNAGG 1 cut(s) 477
BaeGI GKGCMC 2 cut(s) 317, 476
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 2 cut(s) 338, 595
BccI CCATC 3 cut(s) 227, 257, 410
BceAI ACGGC 1 cut(s) 419
BciT130I CCWGG 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 227
BisI GCNGC 2 cut(s) 327, 584
BlsI GCNGC 2 cut(s) 328, 585
Bme1390I CCNGG 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 313
BpmI CTGGAG 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 2 cut(s) 388, 486
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 528, 558
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 486
Bse21I CCTNAGG 1 cut(s) 477
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 2 cut(s) 238, 268
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 468
BseSI GKGCMC 2 cut(s) 317, 476
BseXI GCAGC 2 cut(s) 338, 595
BshFI GGCC 2 cut(s) 434, 540
BshNI GGYRCC 1 cut(s) 314
BshTI ACCGGT 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 426
BsiSI CCGG 2 cut(s) 389, 487
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 227
BsnI GGCC 2 cut(s) 434, 540
Bso31I GGTCTC 1 cut(s) 227
Bsp1286I GDGCHC 3 cut(s) 317, 426, 476
BspACI CCGC 3 cut(s) 195, 260, 361
BspANI GGCC 2 cut(s) 434, 540
BspCNI CTCAG 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 363
BsrFI RCCGGY 1 cut(s) 486
BssAI RCCGGY 1 cut(s) 486
BssECI CCNNGG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 477
BstENI CCTNNNNNAGG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 238, 268
BstMAI GTCTC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 402
BstSLI GKGCMC 2 cut(s) 317, 476
BstV1I GCAGC 2 cut(s) 338, 595
BstXI CCANNNNNNTGG 1 cut(s) 233
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 2 cut(s) 434, 540
BtsCI GGATG 2 cut(s) 238, 268
BtsI GCAGTG 1 cut(s) 593
BtsIMutI CAGTG 2 cut(s) 368, 593
Cfr10I RCCGGY 1 cut(s) 486
CsiI ACCWGGT 1 cut(s) 402
Csp6I GTAC 1 cut(s) 392
CspAI ACCGGT 1 cut(s) 486
CviAII CATG 3 cut(s) 162, 563, 615
CviJI RGCY 5 cut(s) 254, 358, 424, 434, 540
CviKI_1 RGCY 5 cut(s) 254, 358, 424, 434, 540
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 1 cut(s) 477
EaeI YGGCCR 1 cut(s) 432
EciI GGCGGA 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 424
Eco81I CCTNAGG 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 424
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 426
FaeI CATG 3 cut(s) 165, 566, 618
FatI CATG 3 cut(s) 161, 562, 614
FauI CCCGC 1 cut(s) 368
Fnu4HI GCNGC 2 cut(s) 327, 584
FokI GGATG 2 cut(s) 245, 275
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 2 cut(s) 327, 584
GluI GCNGC 2 cut(s) 327, 584
GsuI CTGGAG 1 cut(s) 563
HaeIII GGCC 2 cut(s) 434, 540
HapII CCGG 2 cut(s) 389, 487
Hin1II CATG 3 cut(s) 165, 566, 618
HinfI GANTC 2 cut(s) 555, 576
HpaII CCGG 2 cut(s) 389, 487
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 2 cut(s) 464, 484
Hpy188I TCNGA 2 cut(s) 301, 415
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 2 cut(s) 464, 484
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 3 cut(s) 239, 326, 610
HpyF3I CTNAG 1 cut(s) 477
Hsp92II CATG 3 cut(s) 165, 566, 618
LmnI GCTCC 2 cut(s) 368, 421
LpnPI CCDG 8 cut(s) 26, 229, 389, 402, 416, 489, 500, 593
Lsp1109I GCAGC 2 cut(s) 338, 595
LweI GCATC 1 cut(s) 313
MabI ACCWGGT 1 cut(s) 402
MaeIII GTNAC 3 cut(s) 286, 501, 594
MbiI CCGCTC 1 cut(s) 363
MhlI GDGCHC 3 cut(s) 317, 426, 476
MluCI AATT 9 cut(s) 5, 106, 117, 198, 267, 303, 511, 529, 604
MlyI GAGTC 2 cut(s) 549, 570
MmeI TCCRAC 2 cut(s) 89, 279
MnlI CCTC 6 cut(s) 27, 185, 217, 472, 530, 570
MseI TTAA 3 cut(s) 120, 408, 525
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 2 cut(s) 389, 487
MspR9I CCNGG 1 cut(s) 404
MvaI CCWGG 1 cut(s) 404
NlaIII CATG 3 cut(s) 165, 566, 618
NlaIV GGNNCC 1 cut(s) 316
NmeAIII GCCGAG 1 cut(s) 566
NmuCI GTSAC 1 cut(s) 501
PinAI ACCGGT 1 cut(s) 486
PkrI GCNGC 2 cut(s) 328, 585
PleI GAGTC 2 cut(s) 549, 570
PpsI GAGTC 2 cut(s) 549, 570
PshBI ATTAAT 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 316
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 1 cut(s) 426
SaqAI TTAA 3 cut(s) 120, 408, 525
SatI GCNGC 2 cut(s) 327, 584
SchI GAGTC 2 cut(s) 549, 570
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 3 cut(s) 317, 426, 476
SexAI ACCWGGT 1 cut(s) 402
SfaNI GCATC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 9 cut(s) 5, 106, 117, 198, 267, 303, 511, 529, 604
SsiI CCGC 3 cut(s) 195, 260, 361
SspI AATATT 2 cut(s) 124, 178
SstI GAGCTC 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 5 cut(s) 321, 547, 553, 568, 574
TasI AATT 9 cut(s) 5, 106, 117, 198, 267, 303, 511, 529, 604
Tru1I TTAA 3 cut(s) 120, 408, 525
Tru9I TTAA 3 cut(s) 120, 408, 525
TscAI CASTG 2 cut(s) 375, 593
TseFI GTSAC 1 cut(s) 501
TseI GCWGC 2 cut(s) 326, 583
Tsp45I GTSAC 1 cut(s) 501
TspRI CASTG 2 cut(s) 375, 593
VspI ATTAAT 1 cut(s) 120
XagI CCTNNNNNAGG 1 cut(s) 189
XapI RAATTY 2 cut(s) 267, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.