Rh5CG287800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000673
Physical Location & Seq
Reverse (-)
31531517 .. 31532414
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG287800.1

Sequence Viewer

Length: 369 bp
ATGTTGGGCACCTTCGATGCAGCACTTCAAAAGTGGGTTCTAAAGGACAAGCCCCGCTCCACACTGAAACTACCATATCGTCCGGTACATCTTTACCTGGTTAAATCTGATGGGGAGCTCTTATTGGCCGTCTATCATCAACAGCAAGGTAGTGGTGAACTTTTGTGCCCTGAGGTTTACCGGTTTGATTATTTGTTACAAAAGAATTGGACAAGAGTTAATAATTTAGGAGGCCGAGTTCTGATTTTGAGTCCCTCATGGTCGATTTCGAGTGCTCCAGCAGTGGGGGTTACAAGTAAATTTGCAAACATGATATATGCTGAGGATATGGAGTGCATCCCGACATTGGAGAAGTACAACATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.83

Weight (kDa)

8.55

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 27 - 109 7.6e-09 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AccBSI CCGCTC 1 cut(s) 57
AciI CCGC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 299
AfaI GTAC 2 cut(s) 87, 356
AfiI CCNNNNNNNGG 2 cut(s) 284, 346
AgeI ACCGGT 1 cut(s) 180
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 1 cut(s) 96
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 2 cut(s) 120, 277
AoxI GGCC 2 cut(s) 126, 232
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 299
AsiGI ACCGGT 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 167
AxyI CCTNAGG 1 cut(s) 171
BaeGI GKGCMC 2 cut(s) 11, 170
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 2 cut(s) 120, 277
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 98
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 2 cut(s) 7, 345
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 321
BsaWI WCCGGW 2 cut(s) 82, 180
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 346
Bse118I RCCGGY 1 cut(s) 180
Bse21I CCTNAGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 98
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 284, 346
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 2 cut(s) 162, 312
BseSI GKGCMC 2 cut(s) 11, 170
BseXI GCAGC 1 cut(s) 32
BshFI GGCC 2 cut(s) 128, 234
BshNI GGYRCC 1 cut(s) 8
BshTI ACCGGT 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 120, 277
BsiSI CCGG 2 cut(s) 83, 181
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 284, 346
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 2 cut(s) 128, 234
Bsp1286I GDGCHC 4 cut(s) 11, 120, 170, 277
BspACI CCGC 1 cut(s) 55
BspANI GGCC 2 cut(s) 128, 234
BspCNI CTCAG 2 cut(s) 163, 313
BspLI GGNNCC 1 cut(s) 10
BspT107I GGYRCC 1 cut(s) 8
BsrBI CCGCTC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 360
BsrFI RCCGGY 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 98
BstDEI CTNAG 2 cut(s) 171, 321
BstF5I GGATG 1 cut(s) 336
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstSLI GKGCMC 2 cut(s) 11, 170
BstV1I GCAGC 1 cut(s) 32
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 128, 234
BtsCI GGATG 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 62, 288
Cfr10I RCCGGY 1 cut(s) 180
CsiI ACCWGGT 1 cut(s) 96
Csp6I GTAC 2 cut(s) 86, 355
CspAI ACCGGT 1 cut(s) 180
CviAII CATG 2 cut(s) 258, 310
CviJI RGCY 4 cut(s) 52, 118, 128, 234
CviKI_1 RGCY 4 cut(s) 52, 118, 128, 234
CviQI GTAC 2 cut(s) 86, 355
DdeI CTNAG 2 cut(s) 171, 321
EaeI YGGCCR 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 118
Eco81I CCTNAGG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 120
FaeI CATG 2 cut(s) 261, 313
FaiI YATR 6 cut(s) 76, 259, 311, 316, 318, 329
FaqI GGGAC 1 cut(s) 237
FatI CATG 2 cut(s) 257, 309
FauI CCCGC 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 2 cut(s) 128, 234
HapII CCGG 2 cut(s) 83, 181
Hin1II CATG 2 cut(s) 261, 313
HinfI GANTC 1 cut(s) 250
HpaII CCGG 2 cut(s) 83, 181
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 158, 178
Hpy188I TCNGA 2 cut(s) 109, 243
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 2 cut(s) 158, 178
HpyAV CCTTC 1 cut(s) 22
HpyCH4V TGCA 3 cut(s) 20, 305, 336
HpyF3I CTNAG 2 cut(s) 171, 321
Hsp92II CATG 2 cut(s) 261, 313
LmnI GCTCC 3 cut(s) 62, 115, 280
LpnPI CCDG 6 cut(s) 83, 96, 110, 183, 194, 291
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 2 cut(s) 7, 345
MabI ACCWGGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 195, 289
MbiI CCGCTC 1 cut(s) 57
MhlI GDGCHC 4 cut(s) 11, 120, 170, 277
MluCI AATT 3 cut(s) 205, 223, 299
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 4 cut(s) 166, 224, 265, 316
MseI TTAA 3 cut(s) 102, 219, 367
MspI CCGG 2 cut(s) 83, 181
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
NlaIII CATG 2 cut(s) 261, 313
NlaIV GGNNCC 1 cut(s) 10
NmeAIII GCCGAG 1 cut(s) 260
PinAI ACCGGT 1 cut(s) 180
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 10
RsaI GTAC 2 cut(s) 87, 356
RsaNI GTAC 2 cut(s) 86, 355
SacI GAGCTC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 102, 219, 367
SatI GCNGC 1 cut(s) 21
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 4 cut(s) 11, 120, 170, 277
SetI ASST 5 cut(s) 14, 99, 120, 151, 177
SexAI ACCWGGT 1 cut(s) 96
SfaNI GCATC 2 cut(s) 7, 345
Sse9I AATT 3 cut(s) 205, 223, 299
SsiI CCGC 1 cut(s) 55
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 96
TaqI TCGA 3 cut(s) 15, 263, 269
TasI AATT 3 cut(s) 205, 223, 299
TatI WGTACW 1 cut(s) 354
Tru1I TTAA 3 cut(s) 102, 219, 367
Tru9I TTAA 3 cut(s) 102, 219, 367
TscAI CASTG 2 cut(s) 69, 288
TseI GCWGC 1 cut(s) 20
TspRI CASTG 2 cut(s) 69, 288
XapI RAATTY 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.