Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000673

Physical Location & Seq

Genomic Coordinates Reverse (-)

14777410 .. 14778488

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21711.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGACAAATTCACAGCACCATTGTTGGTCTGATCTTCCGGTTGATCTGTTAACAGAAGTGACCGAACATCTCCCATACCGTGATGTCGTTCGCTTTGGCGTCGTATGTATTCCTGACAACCGGCGTGTAATACTGTGCCAGGGCTGCTGTTCCCGCCCTAAGAAGCGCCGAGGTGCTAACAAAGTTTACTGTCAAGTGTCAAGCAAACTACTTGGACTTAAAAATGCGATCGACCTTCTGGATCAAAAACGTGCGGAGCAGTCGGACTGGTCGTGCACAAAGGTTGAGTTAGCCACCATGACGACCTCTCCAACTCGTCCCGATTGTGTTATTTTTATCCTCTGGTCCAGTACTCATAGGGGATACACTTTAACCTCATATAACCAACAAGCTGGAAGATGGAGTATCTTTAGAGTTCCACATTCACCTACCTTGTCTTTGGGTGAAGAGATCAGAGACGTGGTTTATGCGGATGGAAAGTTATATTTTCTCATTGTTTGCCCCATATGGTCGGAAGTTTTATTGGCAACCTTCGATGTAGCACTTGAGCAGTGGGATCTAAAGCACAATCCGACCTCCACTCTTACACTGCCATTTCGTCCAAGACATCCTCACTTGGTTAAATCTGATGGGGAGCTCTTATTTGCAGTTCGTGGTCAAAGGCCAAGGTTTTTGAGCCCGAGGGTTTATCGGTTTGATTGTTCGTCACTAGAGAATTGGGATAGGGTTGATAGTTTAAGAGGCCGAGTTCTGATTTTGAGCCCCTCAACCTTAATTTTGAGTCTAGCGGTGGGAGCTATAAGTGCATACACAGACAGAATATTACATGTTGAGGGTGTGGATACATTACGGATATGCAAAATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

290

Amino Acids

32.91

Weight (kDa)

8.87

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	95 - 256	4.7e-14	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26661 FvH4_2g26662 FvH4_3g21700 FvH4_3g21711 FvH4_3g21801 FvH4_4g17781 FvH4_4g20671 FvH4_5g08112 FvH4_5g19010
pyrus_communis	pycom11g20050 pycom12g20870
rosa_chinensis	RchiOBHm_Chr3g0473991 RchiOBHm_Chr6g0295501
rosa_laevigata	RLG00000011844 RLG00000011846 RLG00000011847 RLG00000023960 RLG00000025447 RLG00000025455 RLG00000027507 RLG00000029040 RLG00000033754 RLG00000033763 RLG00000033780 RLG00000033784
rosa_multiflora	Rmu_co8461177.1_g000001 Rmu_sc0000006.1_g000007 Rmu_sc0000475.1_g000005 Rmu_sc0001331.1_g000009 Rmu_sc0001576.1_g000022 Rmu_sc0002271.1_g000033 Rmu_sc0002414.1_g000009 Rmu_sc0002521.1_g000001 Rmu_sc0003170.1_g000006 Rmu_sc0003854.1_g000002 Rmu_sc0004190.1_g000002 Rmu_sc0005137.1_g000016 Rmu_sc0006633.1_g000002 Rmu_sc0012290.1_g000003 Rmu_sc0022254.1_g000001 Rmu_sc0027615.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043510 Rroxscaffold_1G00043580 Rroxscaffold_1G00043780 Rroxscaffold_3G00266190 Rroxscaffold_4G00311360 Rroxscaffold_5G00368090 Rroxscaffold_6G00407580 Rroxscaffold_6G00425070 Rroxscaffold_6G00425130 Rroxscaffold_7G00173050
rosa_rugosa	Rorug02G0654500 Rorug04G0209000
rosa_samantha	Rh1AG322000 Rh1BG144900 Rh2CG355900 Rh3BG060900 Rh3BG216400 Rh3DG212200 Rh4CG284500 Rh5AG254200 Rh5BG255100 Rh5BG256200 Rh5CG287800 Rh5CG289200 Rh5CG289300 Rh6AG364700 Rh6BG366800 Rh6DG360500 Rh7AG097700 Rh7BG098700 Rh7CG099600
rosa_wichuraiana	Rw3G004540 Rw5G023530 Rw6G031400 Rw6G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	154, 254, 470, 788
AclWI	GGATC	2 cut(s)	249, 564
AcsI	RAATTY	1 cut(s)	7
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	352
AflIII	ACRYGT	1 cut(s)	826
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	3 cut(s)	392, 637, 797
AluI	AGCT	3 cut(s)	392, 637, 797
Alw21I	GWGCWC	2 cut(s)	278, 639
Alw26I	GTCTC	1 cut(s)	450
Alw44I	GTGCAC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	249, 564
Ama87I	CYCGRG	1 cut(s)	679
AoxI	GGCC	2 cut(s)	662, 742
ApaLI	GTGCAC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	417, 455
AvaI	CYCGRG	1 cut(s)	679
AvaII	GGWCC	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	278
BanII	GRGCYC	3 cut(s)	639, 680, 764
Bbv12I	GWGCWC	2 cut(s)	278, 639
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	3 cut(s)	393, 467, 623
BciT130I	CCWGG	1 cut(s)	140
BciVI	GTATCC	2 cut(s)	356, 835
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	2 cut(s)	710, 785
BfoI	RGCGCY	1 cut(s)	169
BfuI	GTATCC	2 cut(s)	356, 835
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	345
BmeT110I	CYCGRG	1 cut(s)	679
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	566
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	4 cut(s)	139, 169, 665, 680
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	272, 348
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	4 cut(s)	139, 169, 665, 680
BseGI	GGATG	2 cut(s)	478, 607
BseNI	ACTGG	2 cut(s)	272, 348
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	664, 744
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	278, 639
BsiHKCI	CYCGRG	1 cut(s)	679
BsiSI	CCGG	2 cut(s)	38, 121
BslFI	GGGAC	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	450
BsmBI	CGTCTC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	2 cut(s)	664, 744
BsoBI	CYCGRG	1 cut(s)	679
Bsp1286I	GDGCHC	4 cut(s)	278, 639, 680, 764
Bsp143I	GATC	6 cut(s)	31, 43, 228, 241, 450, 556
BspACI	CCGC	4 cut(s)	154, 254, 470, 788
BspANI	GGCC	2 cut(s)	664, 744
BspPI	GGATC	2 cut(s)	249, 564
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	272, 348
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	4 cut(s)	139, 169, 665, 680
BssMI	GATC	6 cut(s)	31, 43, 228, 241, 450, 556
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	3 cut(s)	80, 135, 191
Bst6I	CTCTTC	1 cut(s)	441
BstACI	GRCGYC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	478, 607
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	6 cut(s)	34, 46, 231, 244, 453, 559
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	6 cut(s)	31, 43, 228, 241, 450, 556
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 153, 794, 803
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	556
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	556
BsuI	GTATCC	2 cut(s)	356, 835
BsuRI	GGCC	2 cut(s)	664, 744
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	2 cut(s)	478, 607
BtsI	GCAGTG	2 cut(s)	557, 587
BtsIMutI	CAGTG	2 cut(s)	557, 587
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	2 cut(s)	298, 827
CviJI	RGCY	9 cut(s)	144, 293, 392, 637, 664, 678, 744, 762, 797
CviKI_1	RGCY	9 cut(s)	144, 293, 392, 637, 664, 678, 744, 762, 797
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	6 cut(s)	33, 45, 230, 243, 452, 558
DpnII	GATC	6 cut(s)	31, 43, 228, 241, 450, 556
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Ecl136II	GAGCTC	1 cut(s)	637
Eco130I	CCWWGG	1 cut(s)	665
Eco24I	GRGCYC	3 cut(s)	639, 680, 764
Eco47I	GGWCC	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	637
Eco88I	CYCGRG	1 cut(s)	679
EcoICRI	GAGCTC	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	665
EcoT38I	GRGCYC	3 cut(s)	639, 680, 764
ErhI	CCWWGG	1 cut(s)	665
Esp3I	CGTCTC	1 cut(s)	450
FaeI	CATG	2 cut(s)	301, 830
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	2 cut(s)	297, 826
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	506
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	2 cut(s)	485, 594
FriOI	GRGCYC	3 cut(s)	639, 680, 764
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	2 cut(s)	710, 785
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	145
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	664, 744
HapII	CCGG	2 cut(s)	38, 121
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	301, 830
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	781
HpaI	GTTAAC	1 cut(s)	51
HpaII	CCGG	2 cut(s)	38, 121
HphI	GGTGA	2 cut(s)	417, 455
Hpy166II	GTNNAC	3 cut(s)	51, 187, 276
Hpy188I	TCNGA	7 cut(s)	31, 265, 455, 514, 573, 628, 753
Hpy188III	TCNNGA	3 cut(s)	113, 239, 320
Hpy8I	GTNNAC	3 cut(s)	51, 187, 276
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	245, 541
HpyCH4III	ACNGT	3 cut(s)	80, 135, 191
HpyCH4IV	ACGT	2 cut(s)	250, 459
HpyCH4V	TGCA	4 cut(s)	276, 647, 806, 858
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 153, 794, 803
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	2 cut(s)	250, 459
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	301, 830
HspAI	GCGC	1 cut(s)	166
KspAI	GTTAAC	1 cut(s)	51
Kzo9I	GATC	6 cut(s)	31, 43, 228, 241, 450, 556
LmnI	GCTCC	3 cut(s)	256, 634, 794
Lsp1109I	GCAGC	1 cut(s)	131
MaeI	CTAG	2 cut(s)	710, 785
MaeII	ACGT	2 cut(s)	250, 459
MaeIII	GTNAC	2 cut(s)	58, 705
MalI	GATC	6 cut(s)	33, 45, 230, 243, 452, 558
MboI	GATC	6 cut(s)	31, 43, 228, 241, 450, 556
MboII	GAAGA	3 cut(s)	26, 408, 458
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	4 cut(s)	278, 639, 680, 764
MluCI	AATT	4 cut(s)	7, 715, 774, 861
MlyI	GAGTC	1 cut(s)	790
MmeI	TCCRAC	4 cut(s)	243, 335, 492, 596
MseI	TTAA	7 cut(s)	50, 219, 371, 621, 737, 773, 868
MspI	CCGG	2 cut(s)	38, 121
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	4 cut(s)	144, 153, 794, 803
NdeI	CATATG	1 cut(s)	506
NdeII	GATC	6 cut(s)	31, 43, 228, 241, 450, 556
NlaIII	CATG	2 cut(s)	301, 830
NmeAIII	GCCGAG	2 cut(s)	194, 770
NmuCI	GTSAC	2 cut(s)	58, 705
NspI	RCATGY	1 cut(s)	830
PciI	ACATGT	1 cut(s)	826
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	146
Ple19I	CGATCG	1 cut(s)	231
PleI	GAGTC	1 cut(s)	789
PpsI	GAGTC	1 cut(s)	789
PscI	ACATGT	1 cut(s)	826
Psp124BI	GAGCTC	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	556
PvuI	CGATCG	1 cut(s)	231
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	7 cut(s)	50, 219, 371, 621, 737, 773, 868
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	6 cut(s)	31, 43, 228, 241, 450, 556
Sau96I	GGNCC	1 cut(s)	345
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	1 cut(s)	790
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	4 cut(s)	278, 639, 680, 764
SinI	GGWCC	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	4 cut(s)	7, 715, 774, 861
SsiI	CCGC	4 cut(s)	154, 254, 470, 788
SspI	AATATT	1 cut(s)	822
SspMI	CTAG	2 cut(s)	710, 785
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	3 cut(s)	80, 135, 191
TaiI	ACGT	2 cut(s)	253, 462
TaqI	TCGA	2 cut(s)	231, 534
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	4 cut(s)	7, 715, 774, 861
TatI	WGTACW	1 cut(s)	350
Tru1I	TTAA	7 cut(s)	50, 219, 371, 621, 737, 773, 868
Tru9I	TTAA	7 cut(s)	50, 219, 371, 621, 737, 773, 868
TscAI	CASTG	2 cut(s)	557, 594
TseFI	GTSAC	2 cut(s)	58, 705
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	2 cut(s)	58, 705
TspGWI	ACGGA	1 cut(s)	865
TspRI	CASTG	2 cut(s)	557, 594
VneI	GTGCAC	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	345
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	830
XspI	CTAG	2 cut(s)	710, 785
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.