Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Forward (+)

31052075 .. 31053262

Gene Structure 1188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1224900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAAAGGAATTGACAGAGAGATAAGAGCGTTACTTATGGGTATTATAAACAAAAGGGAAGAGGCGATTAAGGCAGGTGAAGCCACAAAAGATGACTTGTTGGGTGTGCTTATGGAATCCAACTTGAAGGAAATCAAGGAACATGGCAGCAACAAAAAAGTTGGAATGAGTATGCATGATGTGATCGAGGAATGCAAGCTGTTTTACCTTGCAGGGCAGGAGACCACTTCAGGGTTGCTAGTTTGGACAATGATTTTGCTAGGTCAATATCAGAACTGGCAAGATCATGCAAGAGAAGAGGTTTTAGAGGTATTTGGAAGCAACAAGCCAGACTTTGATGGGCTAATACACCTAAAAGTTGTGACCATGATTCTGCATGAAGTTCTTCGATTATACCCAGCACTTACTGTGATGACTCGAACCACAAACAAGAAAACACAACTTTCAAAATATTCATTACCAGCTGGAGTTGAAGTTGCCTTATCCACCCTCTTAGTTCACCATGACAAACAACTGTGGGGTGATGATGCACATGAGTTCAAGCCGGAGAGGTTTTCGGAAGGCATTTTGAAGGCAACAAAGAACAAATTCATGTACTTCCCTTTTGGAGGCGGTCCGCGGAATTGTATCGGGCAAAACTTTGCAATGGTGGAAGCAAAATTGGCCTTATCGTTGATTCTACAACACTATACATTTGAGCTTTCTCCCTCCTATACTCATGCTCCTTCTTCACATCTAACCATTCGGCCACAGTTTGGTGCTCATATCATTTTACACAAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

262

Amino Acids

29.57

Weight (kDa)

7.83

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	5 - 243	2.2e-58	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AarI	CACCTGC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	755
AccII	CGCG	1 cut(s)	619
AciI	CCGC	3 cut(s)	612, 617, 619
AclI	AACGTT	1 cut(s)	781
AcoI	YGGCCR	1 cut(s)	746
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	3 cut(s)	231, 608, 755
AgsI	TTSAA	5 cut(s)	127, 447, 473, 541, 571
AluBI	AGCT	3 cut(s)	199, 464, 700
AluI	AGCT	3 cut(s)	199, 464, 700
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	663, 746
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	587
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
Asp700I	GAANNNNTTC	2 cut(s)	384, 587
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	3 cut(s)	89, 491, 533
AvaII	GGWCC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	2 cut(s)	239, 260
BfuAI	ACCTGC	1 cut(s)	65
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	1 cut(s)	614
BmsI	GCATC	1 cut(s)	517
BpmI	CTGGAG	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	617
BsaXI	ACNNNNNCTCC	4 cut(s)	459, 489, 706, 736
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 608, 755
Bse1I	ACTGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	617
BseLI	CCNNNNNNNGG	3 cut(s)	231, 608, 755
BseMI	GCAATG	1 cut(s)	651
BseNI	ACTGG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	159
BseYI	CCCAGC	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	619
BshFI	GGCC	2 cut(s)	665, 748
BsiHKAI	GWGCWC	1 cut(s)	763
BsiSI	CCGG	1 cut(s)	545
BslI	CCNNNNNNNGG	3 cut(s)	231, 608, 755
BsmAI	GTCTC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	665, 748
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp143I	GATC	2 cut(s)	183, 283
BspACI	CCGC	3 cut(s)	612, 617, 619
BspANI	GGCC	2 cut(s)	665, 748
BspFNI	CGCG	1 cut(s)	619
BspMI	ACCTGC	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	617
BssMI	GATC	2 cut(s)	183, 283
Bst4CI	ACNGT	3 cut(s)	409, 516, 753
Bst6I	CTCTTC	2 cut(s)	54, 291
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	493
BstDSI	CCRYGG	1 cut(s)	617
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstFNI	CGCG	1 cut(s)	619
BstKTI	GATC	2 cut(s)	186, 286
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	183, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 80, 662
BstUI	CGCG	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	665, 748
BtgI	CCRYGG	1 cut(s)	617
BveI	ACCTGC	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	614
Cfr42I	CCGCGG	1 cut(s)	620
CpoI	CGGWCCG	1 cut(s)	614
Csp6I	GTAC	1 cut(s)	595
CspI	CGGWCCG	1 cut(s)	614
CviAII	CATG	9 cut(s)	143, 176, 287, 367, 377, 503, 533, 592, 719
CviJI	RGCY	9 cut(s)	83, 199, 328, 343, 464, 544, 665, 700, 748
CviKI_1	RGCY	9 cut(s)	83, 199, 328, 343, 464, 544, 665, 700, 748
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	1 cut(s)	493
DpnI	GATC	2 cut(s)	185, 285
DpnII	GATC	2 cut(s)	183, 283
EaeI	YGGCCR	1 cut(s)	746
Eam1104I	CTCTTC	2 cut(s)	54, 291
EarI	CTCTTC	2 cut(s)	54, 291
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	614
Eco57I	CTGAAG	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoT22I	ATGCAT	1 cut(s)	177
FaeI	CATG	9 cut(s)	146, 179, 290, 370, 380, 506, 536, 595, 722
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	9 cut(s)	142, 175, 286, 366, 376, 502, 532, 591, 718
Fnu4HI	GCNGC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	2 cut(s)	239, 260
GluI	GCNGC	1 cut(s)	148
GsaI	CCCAGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	665, 748
HapII	CCGG	1 cut(s)	545
Hin1II	CATG	9 cut(s)	146, 179, 290, 370, 380, 506, 536, 595, 722
HinfI	GANTC	4 cut(s)	116, 370, 415, 676
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	3 cut(s)	89, 491, 533
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	2 cut(s)	273, 559
Hpy8I	GTNNAC	1 cut(s)	499
HpyAV	CCTTC	4 cut(s)	121, 554, 565, 735
HpyCH4III	ACNGT	3 cut(s)	409, 516, 753
HpyCH4IV	ACGT	1 cut(s)	781
HpyCH4V	TGCA	7 cut(s)	175, 195, 212, 290, 376, 530, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 80, 662
HpyF3I	CTNAG	1 cut(s)	493
HpySE526I	ACGT	1 cut(s)	781
Hsp92II	CATG	9 cut(s)	146, 179, 290, 370, 380, 506, 536, 595, 722
KspI	CCGCGG	1 cut(s)	620
Kzo9I	GATC	2 cut(s)	183, 283
LmnI	GCTCC	1 cut(s)	727
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	239, 260
MaeII	ACGT	1 cut(s)	781
MaeIII	GTNAC	2 cut(s)	30, 361
MalI	GATC	2 cut(s)	185, 285
MboI	GATC	2 cut(s)	183, 283
MboII	GAAGA	4 cut(s)	71, 308, 377, 720
MhlI	GDGCHC	1 cut(s)	763
MluCI	AATT	4 cut(s)	9, 587, 622, 659
MlyI	GAGTC	1 cut(s)	409
MmeI	TCCRAC	2 cut(s)	142, 144
MnlI	CCTC	8 cut(s)	55, 181, 292, 301, 500, 543, 602, 718
Mph1103I	ATGCAT	1 cut(s)	177
MroXI	GAANNNNTTC	2 cut(s)	384, 587
MseI	TTAA	1 cut(s)	69
MspA1I	CMGCKG	2 cut(s)	464, 619
MspI	CCGG	1 cut(s)	545
Mva1269I	GAATGC	1 cut(s)	197
MvnI	CGCG	1 cut(s)	619
MwoI	GCNNNNNNNGC	3 cut(s)	71, 80, 662
NdeII	GATC	2 cut(s)	183, 283
NlaIII	CATG	9 cut(s)	146, 179, 290, 370, 380, 506, 536, 595, 722
NmuCI	GTSAC	1 cut(s)	361
NsiI	ATGCAT	1 cut(s)	177
PaqCI	CACCTGC	1 cut(s)	65
PctI	GAATGC	1 cut(s)	197
PdmI	GAANNNNTTC	2 cut(s)	384, 587
PfeI	GAWTC	3 cut(s)	116, 370, 676
PflMI	CCANNNNNTGG	1 cut(s)	755
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PsiI	TTATAA	1 cut(s)	47
Psp1406I	AACGTT	1 cut(s)	781
PspFI	CCCAGC	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
Rsr2I	CGGWCCG	1 cut(s)	614
RsrII	CGGWCCG	1 cut(s)	614
SacII	CCGCGG	1 cut(s)	620
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	2 cut(s)	183, 283
Sau96I	GGNCC	1 cut(s)	614
SchI	GAGTC	1 cut(s)	409
SduI	GDGCHC	1 cut(s)	763
SfaNI	GCATC	1 cut(s)	517
Sfr303I	CCGCGG	1 cut(s)	620
SgrBI	CCGCGG	1 cut(s)	620
SinI	GGWCC	1 cut(s)	614
Sse9I	AATT	4 cut(s)	9, 587, 622, 659
SsiI	CCGC	3 cut(s)	612, 617, 619
SspI	AATATT	1 cut(s)	452
SspMI	CTAG	2 cut(s)	239, 260
TaaI	ACNGT	3 cut(s)	409, 516, 753
TaiI	ACGT	1 cut(s)	784
TaqI	TCGA	3 cut(s)	186, 388, 418
TasI	AATT	4 cut(s)	9, 587, 622, 659
TatI	WGTACW	1 cut(s)	594
TfiI	GAWTC	3 cut(s)	116, 370, 676
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	4 cut(s)	17, 393, 444, 580
Van91I	CCANNNNNTGG	1 cut(s)	755
VpaK11BI	GGWCC	1 cut(s)	614
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	1 cut(s)	587
XmnI	GAANNNNTTC	2 cut(s)	384, 587
XspI	CTAG	2 cut(s)	239, 260
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.