Rroxscaffold_3G00253110

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
47172249 .. 47173902
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253110.1

Sequence Viewer

Length: 1056 bp
ATGTTACCAGCGTTTCACCAAAGTTGTAATGGGATGATTAATGAATGGGAAAGCTTGGTTTCCAAAGAGGGTTCATGTGAGTTGGATGTTTGGCCTAGTCTCCAAAGTTTATCAGATGATGTGCTTTGTCGAACATCATTTGGAAGTAGCTATGAAGAAGGAAAGCAAATATTTGAACTCTTGAAAGAGCAGGCAGTACTTTCAATAAAAGCTTTACAAAGTGTTGACATTCCAGGATGGAGGTTTGTACCAACTAAGATGAACAAGAAGATGATGGAGATTGATAAAGAAATTAAATGTTTACTCAAGGGAATTATAAATAAAAGAGAAGAGGCCATTAAGGCTGGTGAACCCTCTAAAGACGATCTACTAAGTCTACTTCTGGAATCCAATCTCAAGGAAATTCATGAACATAGGAACAACAAAAACTTTGGGATGAGTATTGAAGAAGTTATCGAGGACTGTAAGCTGTTTTACTTTGCTGGGCAAGAGACAACCGCGGTGCTGCTTGTTTGGTCAATGATTTTACTTGGCCAATATCAGAACTGGCAAACTTATGCGCGAGAAGAGGTTCTGCAAGTCTTTGGAAGCAACAAACCAGACTTTGATGGGTTAACTCGCCTAAAAATTGTAACCATGATTTTACGTGAAGTTCTCCGATTATATCCAGCGGCAGTGGTGATTTCTCGAAACACTTACAAGGAAACGCAACTTGGAAAATTATCTATACCAGCCGGAGTTGAAATCTCATTGCCCATACTCCTTGTTCACCATGACGAAGAATTGTGGGGAGATGATGCAAAGGAGTTCAAGCCAGAGAGATTTGCAGAAGGAGTTTCAAAGGTTACAAAGGGCCAACTTTCATACTTCCCTTTTGGAGGTGGTCCACGGGTTTGCATTGGTCAAAACTTTGCTATGATTGAAGCAAAACTCGCCTTATCATTGATATTACAGCACTTCAGCTTTGAGCTTTCTCCATCCTATGCTCATGCCCCTTCCTCAATAGCAAGTCTTCAGCCACAATATGGTGCTCATCTCATTTTGCATCAACGCTGA

Protein Analysis

351

Amino Acids

39.68

Weight (kDa)

5.68

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 330 5.3e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 1025
AccI GTMKAC 1 cut(s) 376
AccII CGCG 2 cut(s) 500, 562
AciI CCGC 3 cut(s) 498, 500, 671
AcoI YGGCCR 1 cut(s) 532
AcsI RAATTY 1 cut(s) 402
AcuI CTGAAG 2 cut(s) 943, 998
AfaI GTAC 2 cut(s) 198, 249
AfiI CCNNNNNNNGG 2 cut(s) 878, 1025
AgsI TTSAA 8 cut(s) 176, 184, 204, 446, 743, 811, 840, 923
AjnI CCWGG 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
AluBI AGCT 6 cut(s) 54, 150, 212, 469, 963, 970
AluI AGCT 6 cut(s) 54, 150, 212, 469, 963, 970
Alw21I GWGCWC 1 cut(s) 1033
Alw26I GTCTC 2 cut(s) 104, 485
AoxI GGCC 4 cut(s) 92, 333, 532, 853
ApeKI GCWGC 1 cut(s) 505
ApoI RAATTY 1 cut(s) 402
AseI ATTAAT 1 cut(s) 39
Asp700I GAANNNNTTC 1 cut(s) 570
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 2 cut(s) 853, 884
AsuHPI GGTGA 4 cut(s) 8, 359, 691, 761
AvaII GGWCC 1 cut(s) 884
BalI TGGCCA 1 cut(s) 534
BbsI GAAGAC 1 cut(s) 1004
Bbv12I GWGCWC 1 cut(s) 1033
BbvI GCAGC 1 cut(s) 492
BccI CCATC 4 cut(s) 231, 268, 602, 985
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 104, 485
BfaI CTAG 1 cut(s) 96
BglI GCCNNNNNGGC 1 cut(s) 341
BisI GCNGC 2 cut(s) 506, 672
BlsI GCNGC 2 cut(s) 507, 673
BmcAI AGTACT 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 884
BmgT120I GGNCC 2 cut(s) 853, 884
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 787
BpiI GAAGAC 1 cut(s) 1004
BpuEI CTTGAG 2 cut(s) 290, 380
BsaAI YACGTR 1 cut(s) 647
BsaJI CCNNGG 2 cut(s) 498, 887
Bsc4I CCNNNNNNNGG 2 cut(s) 878, 1025
Bse1I ACTGG 1 cut(s) 551
Bse3DI GCAATG 1 cut(s) 749
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 498, 887
BseGI GGATG 5 cut(s) 39, 91, 242, 441, 977
BseLI CCNNNNNNNGG 2 cut(s) 878, 1025
BseMI GCAATG 1 cut(s) 749
BseNI ACTGG 1 cut(s) 551
BseXI GCAGC 1 cut(s) 492
BseYI CCCAGC 1 cut(s) 482
Bsh1236I CGCG 2 cut(s) 500, 562
BshFI GGCC 4 cut(s) 94, 335, 534, 855
BsiHKAI GWGCWC 1 cut(s) 1033
BsiSI CCGG 1 cut(s) 735
BslI CCNNNNNNNGG 2 cut(s) 878, 1025
BsmAI GTCTC 2 cut(s) 104, 485
BsnI GGCC 4 cut(s) 94, 335, 534, 855
Bsp1286I GDGCHC 1 cut(s) 1033
Bsp143I GATC 1 cut(s) 364
BspACI CCGC 3 cut(s) 498, 500, 671
BspANI GGCC 4 cut(s) 94, 335, 534, 855
BspFNI CGCG 2 cut(s) 500, 562
BspHI TCATGA 1 cut(s) 406
BsrDI GCAATG 1 cut(s) 749
BsrI ACTGG 1 cut(s) 551
BssECI CCNNGG 2 cut(s) 498, 887
BssMI GATC 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 2 cut(s) 324, 561
BstBAI YACGTR 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 255, 371
BstDSI CCRYGG 2 cut(s) 498, 887
BstENI CCTNNNNNAGG 1 cut(s) 876
BstF5I GGATG 5 cut(s) 39, 91, 242, 441, 977
BstFNI CGCG 2 cut(s) 500, 562
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 2 cut(s) 104, 485
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 2 cut(s) 341, 932
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstUI CGCG 2 cut(s) 500, 562
BstV1I GCAGC 1 cut(s) 492
BstV2I GAAGAC 1 cut(s) 1004
BsuRI GGCC 4 cut(s) 94, 335, 534, 855
BtgI CCRYGG 2 cut(s) 498, 887
BtsCI GGATG 5 cut(s) 39, 91, 242, 441, 977
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 1 cut(s) 192
CciI TCATGA 1 cut(s) 406
CfoI GCGC 1 cut(s) 562
Cfr13I GGNCC 2 cut(s) 853, 884
Cfr42I CCGCGG 1 cut(s) 501
Csp6I GTAC 2 cut(s) 197, 248
CviAII CATG 5 cut(s) 75, 407, 637, 773, 989
CviQI GTAC 2 cut(s) 197, 248
DdeI CTNAG 2 cut(s) 255, 371
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
EaeI YGGCCR 1 cut(s) 532
Eam1104I CTCTTC 2 cut(s) 324, 561
EarI CTCTTC 2 cut(s) 324, 561
Eco47I GGWCC 1 cut(s) 884
Eco57I CTGAAG 2 cut(s) 943, 998
EcoNI CCTNNNNNAGG 1 cut(s) 876
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 5 cut(s) 78, 410, 640, 776, 992
FatI CATG 5 cut(s) 74, 406, 636, 772, 988
FblI GTMKAC 1 cut(s) 376
Fnu4HI GCNGC 2 cut(s) 506, 672
FokI GGATG 5 cut(s) 46, 98, 249, 448, 964
Fsp4HI GCNGC 2 cut(s) 506, 672
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 561
GluI GCNGC 2 cut(s) 506, 672
GsaI CCCAGC 1 cut(s) 486
HaeIII GGCC 4 cut(s) 94, 335, 534, 855
HapII CCGG 1 cut(s) 735
HhaI GCGC 1 cut(s) 562
Hin1II CATG 5 cut(s) 78, 410, 640, 776, 992
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HincII GTYRAC 2 cut(s) 226, 615
HindII GTYRAC 2 cut(s) 226, 615
HindIII AAGCTT 2 cut(s) 52, 210
HinfI GANTC 1 cut(s) 386
HpaI GTTAAC 1 cut(s) 615
HpaII CCGG 1 cut(s) 735
HphI GGTGA 4 cut(s) 8, 359, 691, 761
Hpy166II GTNNAC 7 cut(s) 226, 302, 350, 377, 615, 769, 887
Hpy188I TCNGA 3 cut(s) 115, 543, 659
Hpy188III TCNNGA 4 cut(s) 181, 383, 407, 687
Hpy8I GTNNAC 7 cut(s) 226, 302, 350, 377, 615, 769, 887
HpyAV CCTTC 3 cut(s) 152, 824, 1005
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 646
HpyCH4V TGCA 5 cut(s) 577, 800, 827, 897, 1045
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 932
HpyF3I CTNAG 2 cut(s) 255, 371
HpySE526I ACGT 1 cut(s) 646
Hsp92II CATG 5 cut(s) 78, 410, 640, 776, 992
HspAI GCGC 1 cut(s) 560
KspAI GTTAAC 1 cut(s) 615
KspI CCGCGG 1 cut(s) 501
Kzo9I GATC 1 cut(s) 364
Lsp1109I GCAGC 1 cut(s) 492
LweI GCATC 1 cut(s) 787
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 646
MaeIII GTNAC 3 cut(s) 3, 631, 844
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 7 cut(s) 167, 280, 341, 458, 578, 791, 1004
MhlI GDGCHC 1 cut(s) 1033
MlsI TGGCCA 1 cut(s) 534
MluCI AATT 6 cut(s) 291, 312, 402, 627, 719, 782
MluNI TGGCCA 1 cut(s) 534
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 8 cut(s) 61, 234, 325, 364, 451, 562, 872, 1009
Mox20I TGGCCA 1 cut(s) 534
MroXI GAANNNNTTC 1 cut(s) 570
MscI TGGCCA 1 cut(s) 534
MseI TTAA 4 cut(s) 39, 294, 339, 614
Msp20I TGGCCA 1 cut(s) 534
MspA1I CMGCKG 2 cut(s) 500, 671
MspI CCGG 1 cut(s) 735
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 2 cut(s) 500, 562
MwoI GCNNNNNNNGC 2 cut(s) 341, 932
NdeII GATC 1 cut(s) 364
NlaIII CATG 5 cut(s) 78, 410, 640, 776, 992
PagI TCATGA 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 1025
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 2 cut(s) 507, 673
Ppu21I YACGTR 1 cut(s) 647
PshBI ATTAAT 1 cut(s) 39
PsiI TTATAA 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 482
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 2 cut(s) 853, 884
RsaI GTAC 2 cut(s) 198, 249
RsaNI GTAC 2 cut(s) 197, 248
SacII CCGCGG 1 cut(s) 501
SaqAI TTAA 4 cut(s) 39, 294, 339, 614
SatI GCNGC 2 cut(s) 506, 672
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 2 cut(s) 853, 884
ScaI AGTACT 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 1033
SfaNI GCATC 1 cut(s) 787
Sfr303I CCGCGG 1 cut(s) 501
SgrBI CCGCGG 1 cut(s) 501
SinI GGWCC 1 cut(s) 884
SmlI CTYRAG 2 cut(s) 305, 395
SmoI CTYRAG 2 cut(s) 305, 395
Sse9I AATT 6 cut(s) 291, 312, 402, 627, 719, 782
SsiI CCGC 3 cut(s) 498, 500, 671
SspI AATATT 1 cut(s) 171
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 1 cut(s) 649
TaqI TCGA 3 cut(s) 130, 456, 688
TasI AATT 6 cut(s) 291, 312, 402, 627, 719, 782
TatI WGTACW 1 cut(s) 196
TauI GCSGC 1 cut(s) 674
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 4 cut(s) 39, 294, 339, 614
Tru9I TTAA 4 cut(s) 39, 294, 339, 614
TscAI CASTG 1 cut(s) 681
TseI GCWGC 1 cut(s) 505
TspDTI ATGAA 7 cut(s) 57, 63, 168, 275, 395, 423, 852
TspRI CASTG 1 cut(s) 681
Van91I CCANNNNNTGG 1 cut(s) 1025
VpaK11BI GGWCC 1 cut(s) 884
VspI ATTAAT 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 876
XapI RAATTY 1 cut(s) 402
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 376
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 1 cut(s) 96
ZrmI AGTACT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.