RLG00000003223

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
45846079 .. 45847483
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003223

Sequence Viewer

Length: 1056 bp
ATGTTACCGGCCGTTTCTCAAAGCTGTGGTGAGATGATTAATGAATGGGAGACATTGCTTACCGAAAATGGTTCATTTGAGTTGGACGTGTGGCCTTATCTCCAAAATTTGACGGGTGATGTGATATCTCGAACAACATTTGGAAGTAGTTACAAAGAAGGACTAAAACTATTCGAACTCTTGAGGGAACAAGCAGTACTTGTAACAAAAACTTCACATTTTGTTAATATTCTAGGGTGGAGGTTCCTACCAACTAAGATGAACAAGAGGATGAAGCAAAATGCCAAAGAAGTACAAGGTTTACTGGAGGGAATTATAAATAAAAGAAAAGAGGCAATTAAGGGTGGTGAAGCAACTAAAGATGACTTGTTAGGAATACTTTTGGAATCCAATTTTAAGAAAATTCAAGAACATGGGAACCGAAAAAACATTGGACTGAGTCTTCAAGACATCATTGATGAGTGTAAATTGTTTTACTTTGGAGGGCAAGAAACCACTTCAGTATTAGTTGTTTGGACAATAGTTTTGCTCTCTCAAAATCCGAATTGGCAAACTCATGCAAGAGAAGAGGTTTTGAAAGTATTTGGAAACAAAAGACCAGACTTTAAGGGGATGACACAACTAAAAGTTATGACCATGGTTTTACGTGAAGTTCTTTGGTTATATCCACCAGTAGCTTCTTTGAATCGAGCCACTTATAAGAAAACACAACTTGGAACGTTATCATTACCAGCTGGAGTTGAAATGTCCATACCCATATTGCTTATTCATCACCATAAGAAACTGTGGGGTGATGATGCGGAAGAGTTTAATCCAGAAAGATTTTCAGATGGAGTTTCAAAGGCAACTAAGGGACAAATTTCGTTCTTCCCTTTTGGAGGAGGTCCTCGCATTTGCATTGGTCAAAATTTTGCTATGATGGAAGCAAAAGTTGTGCTATCATTGATTTTGCAACACTTCACCTTTGAGCTTTCTCCATCATATGCTCATGCTCCTTCCTCATTTATAACTCTCCAGCCACAATATGGCGTTCATATCGTCTTAAACAAACGTTAA

Protein Analysis

352

Amino Acids

39.73

Weight (kDa)

8.93

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 327 7.2e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 317, 699, 1007
AccB7I CCANNNNNTGG 1 cut(s) 1025
AciI CCGC 1 cut(s) 800
AclI AACGTT 2 cut(s) 719, 1051
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 4 cut(s) 106, 402, 858, 907
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 2 cut(s) 198, 294
AfiI CCNNNNNNNGG 2 cut(s) 878, 1025
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 6 cut(s) 407, 446, 577, 685, 743, 840
AjiI CACGTC 1 cut(s) 88
AluBI AGCT 4 cut(s) 24, 677, 734, 970
AluI AGCT 4 cut(s) 24, 677, 734, 970
Alw26I GTCTC 1 cut(s) 44
AoxI GGCC 2 cut(s) 9, 92
ApoI RAATTY 4 cut(s) 106, 402, 858, 907
ArsI GACNNNNNNTTYG 2 cut(s) 508, 540
AseI ATTAAT 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 884
AsuHPI GGTGA 6 cut(s) 41, 128, 359, 764, 803, 952
AsuII TTCGAA 1 cut(s) 174
AvaII GGWCC 1 cut(s) 884
BbsI GAAGAC 1 cut(s) 434
BccI CCATC 3 cut(s) 824, 913, 985
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 233
BmcAI AGTACT 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 884
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 884
BmiI GGNNCC 2 cut(s) 245, 419
BmsI GCATC 1 cut(s) 787
BpiI GAAGAC 1 cut(s) 434
BpmI CTGGAG 3 cut(s) 326, 756, 998
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 202
BsaAI YACGTR 1 cut(s) 647
BsaJI CCNNGG 1 cut(s) 636
Bsc4I CCNNNNNNNGG 2 cut(s) 878, 1025
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 2 cut(s) 309, 671
Bse3DI GCAATG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 636
BseGI GGATG 2 cut(s) 276, 618
BseLI CCNNNNNNNGG 2 cut(s) 878, 1025
BseMI GCAATG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 2 cut(s) 309, 671
BseRI GAGGAG 1 cut(s) 894
BseX3I CGGCCG 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 2 cut(s) 11, 94
BsiEI CGRYCG 1 cut(s) 12
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 867
BslI CCNNNNNNNGG 2 cut(s) 878, 1025
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 867
BsnI GGCC 2 cut(s) 11, 94
Bsp119I TTCGAA 1 cut(s) 174
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 1 cut(s) 800
BspANI GGCC 2 cut(s) 11, 94
BspCNI CTCAG 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 245, 419
BspT104I TTCGAA 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 7
BsrI ACTGG 2 cut(s) 309, 671
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 636
BssT1I CCWWGG 1 cut(s) 636
Bst4CI ACNGT 1 cut(s) 786
Bst6I CTCTTC 2 cut(s) 561, 798
BstBAI YACGTR 1 cut(s) 647
BstBI TTCGAA 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 255, 437, 849
BstDSI CCRYGG 1 cut(s) 636
BstENI CCTNNNNNAGG 1 cut(s) 876
BstF5I GGATG 2 cut(s) 276, 618
BstMAI GTCTC 1 cut(s) 44
BstMCI CGRYCG 1 cut(s) 12
BstV2I GAAGAC 1 cut(s) 434
BstZI CGGCCG 1 cut(s) 9
BsuRI GGCC 2 cut(s) 11, 94
BtgI CCRYGG 1 cut(s) 636
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 276, 618
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 884
Csp6I GTAC 2 cut(s) 197, 293
CviAII CATG 4 cut(s) 413, 557, 637, 989
CviJI RGCY 8 cut(s) 11, 24, 94, 677, 692, 734, 970, 1018
CviKI_1 RGCY 8 cut(s) 11, 24, 94, 677, 692, 734, 970, 1018
CviQI GTAC 2 cut(s) 197, 293
DdeI CTNAG 3 cut(s) 255, 437, 849
EaeI YGGCCR 1 cut(s) 9
EagI CGGCCG 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 561, 798
EarI CTCTTC 2 cut(s) 561, 798
EclXI CGGCCG 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 636
Eco32I GATATC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 884
Eco52I CGGCCG 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 483
EcoNI CCTNNNNNAGG 1 cut(s) 876
EcoO109I RGGNCCY 1 cut(s) 884
EcoRV GATATC 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 4 cut(s) 416, 560, 640, 992
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 867
FatI CATG 4 cut(s) 412, 556, 636, 988
FauNDI CATATG 1 cut(s) 982
FokI GGATG 2 cut(s) 283, 625
FspBI CTAG 1 cut(s) 233
GsuI CTGGAG 3 cut(s) 326, 756, 998
HaeIII GGCC 2 cut(s) 11, 94
HapII CCGG 1 cut(s) 8
Hin1II CATG 4 cut(s) 416, 560, 640, 992
HinfI GANTC 3 cut(s) 386, 439, 685
HpaII CCGG 1 cut(s) 8
HphI GGTGA 6 cut(s) 41, 128, 359, 764, 803, 952
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 2 cut(s) 543, 829
Hpy188III TCNNGA 5 cut(s) 129, 181, 407, 446, 815
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 2 cut(s) 152, 1005
HpyCH4III ACNGT 1 cut(s) 786
HpyCH4IV ACGT 4 cut(s) 87, 646, 719, 1051
HpyCH4V TGCA 3 cut(s) 560, 897, 952
HpyF3I CTNAG 3 cut(s) 255, 437, 849
HpySE526I ACGT 4 cut(s) 87, 646, 719, 1051
Hsp92II CATG 4 cut(s) 416, 560, 640, 992
LmnI GCTCC 1 cut(s) 997
LpnPI CCDG 8 cut(s) 21, 290, 612, 684, 720, 744, 828, 1028
LweI GCATC 1 cut(s) 787
MaeI CTAG 1 cut(s) 233
MaeII ACGT 4 cut(s) 87, 646, 719, 1051
MaeIII GTNAC 3 cut(s) 3, 149, 202
MboII GAAGA 4 cut(s) 434, 578, 815, 859
MluCI AATT 9 cut(s) 106, 312, 336, 391, 402, 467, 544, 858, 907
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 1 cut(s) 63
MseI TTAA 8 cut(s) 39, 225, 339, 396, 606, 810, 1043, 1054
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 1 cut(s) 8
NcoI CCATGG 1 cut(s) 636
NdeI CATATG 1 cut(s) 982
NlaIII CATG 4 cut(s) 416, 560, 640, 992
NlaIV GGNNCC 2 cut(s) 245, 419
NspV TTCGAA 1 cut(s) 174
PfeI GAWTC 2 cut(s) 386, 685
PflFI GACNNNGTC 1 cut(s) 438
PflMI CCANNNNNTGG 1 cut(s) 1025
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
Ppu21I YACGTR 1 cut(s) 647
PpuMI RGGWCCY 1 cut(s) 884
PshBI ATTAAT 1 cut(s) 39
PsiI TTATAA 3 cut(s) 317, 699, 1007
Psp1406I AACGTT 2 cut(s) 719, 1051
Psp5II RGGWCCY 1 cut(s) 884
PspN4I GGNNCC 2 cut(s) 245, 419
PspPI GGNCC 1 cut(s) 884
PspPPI RGGWCCY 1 cut(s) 884
PsrI GAACNNNNNNTAC 2 cut(s) 180, 212
PsyI GACNNNGTC 1 cut(s) 438
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 2 cut(s) 198, 294
RsaNI GTAC 2 cut(s) 197, 293
SaqAI TTAA 8 cut(s) 39, 225, 339, 396, 606, 810, 1043, 1054
Sau96I GGNCC 1 cut(s) 884
ScaI AGTACT 1 cut(s) 198
SchI GAGTC 1 cut(s) 448
SfaNI GCATC 1 cut(s) 787
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 1 cut(s) 884
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 9 cut(s) 106, 312, 336, 391, 402, 467, 544, 858, 907
SsiI CCGC 1 cut(s) 800
SspI AATATT 1 cut(s) 229
SspMI CTAG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 1 cut(s) 786
TaiI ACGT 4 cut(s) 90, 649, 722, 1054
TaqI TCGA 3 cut(s) 130, 174, 688
TasI AATT 9 cut(s) 106, 312, 336, 391, 402, 467, 544, 858, 907
TatI WGTACW 2 cut(s) 196, 292
TfiI GAWTC 2 cut(s) 386, 685
Tru1I TTAA 8 cut(s) 39, 225, 339, 396, 606, 810, 1043, 1054
Tru9I TTAA 8 cut(s) 39, 225, 339, 396, 606, 810, 1043, 1054
TspDTI ATGAA 6 cut(s) 57, 63, 275, 287, 758, 1022
Tth111I GACNNNGTC 1 cut(s) 438
Van91I CCANNNNNTGG 1 cut(s) 1025
VpaK11BI GGWCC 1 cut(s) 884
VspI ATTAAT 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 876
XapI RAATTY 4 cut(s) 106, 402, 858, 907
XcmI CCANNNNNNNNNTGG 1 cut(s) 1022
XspI CTAG 1 cut(s) 233
ZrmI AGTACT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.