pycom15g04890

Cytochrome p450

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
2928345 .. 2928923
579 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g04890.1

Sequence Viewer

Length: 465 bp
ATGTTACATGTACCACAACTACTTACTAGTTACTATAATGTGTCGATGATACTAAAGGAAGTTCTAAGGTTATATTCACCTGTGTCTGCTCTATACAGGCACACCCAAATCAAAACCAATGTTGGAGGCATTTCCATCCCAGCTGGGGTTGAATTTGTGCTGCTGACTATGTTTCTTCACCATGATAAAAAATGTTGGGGTGAAGACGTTGAGGAGTTCAACCCCGAGAGATTTGCTGAAGGAGTTGTAAAGGAACCAAAGGATCAAGTTGTATTCTACCCATTTAGTTGGGGCCCTAGAATATGCATAGGGCAAACTTTTGCTGTGATAGAAGCAAAGATGGCTCTAGCTATGATTCTTCAGCATTTTTCTTTTGAGCTCTCACCTTCTTACACTCATGCTCCTGTTATGGGCATTACCCTTCAGCCACAACATGGAGCCACAGTTACACTTCACAGAATTTAA

Protein Analysis

155

Amino Acids

17.47

Weight (kDa)

6.7

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 15 - 131 3.7e-34 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 434
AclWI GGATC 1 cut(s) 270
AcsI RAATTY 2 cut(s) 152, 459
AcuI CTGAAG 3 cut(s) 258, 344, 407
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 3 cut(s) 145, 410, 434
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 2 cut(s) 152, 220
AhlI ACTAGT 1 cut(s) 26
AluBI AGCT 3 cut(s) 143, 350, 379
AluI AGCT 3 cut(s) 143, 350, 379
Alw21I GWGCWC 1 cut(s) 381
AlwI GGATC 1 cut(s) 270
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 1 cut(s) 292
ApaI GGGCCC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 2 cut(s) 152, 459
AspS9I GGNCC 2 cut(s) 292, 293
AsuHPI GGTGA 4 cut(s) 69, 170, 212, 375
AvaI CYCGRG 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 296
BanII GRGCYC 2 cut(s) 296, 381
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 147
BccI CCATC 2 cut(s) 143, 334
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 3 cut(s) 27, 297, 347
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 292, 293
BmiI GGNNCC 4 cut(s) 255, 293, 294, 439
BpiI GAAGAC 1 cut(s) 210
BsaXI ACNNNNNCTCC 4 cut(s) 385, 415, 429, 459
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 410, 434
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 3 cut(s) 145, 410, 434
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 1 cut(s) 147
BseYI CCCAGC 2 cut(s) 139, 143
BshFI GGCC 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 381
BsiHKCI CYCGRG 1 cut(s) 224
BslI CCNNNNNNNGG 3 cut(s) 145, 410, 434
BsnI GGCC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 224
Bsp120I GGGCCC 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 296, 381
Bsp143I GATC 1 cut(s) 262
BspANI GGCC 1 cut(s) 294
BspLI GGNNCC 4 cut(s) 255, 293, 294, 439
BspPI GGATC 1 cut(s) 270
BssMI GATC 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 445
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNSI RCATGY 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 210
BstXI CCANNNNNNTGG 1 cut(s) 288
BsuRI GGCC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 292, 293
Csp6I GTAC 1 cut(s) 11
CviAII CATG 4 cut(s) 8, 182, 398, 434
CviJI RGCY 7 cut(s) 143, 294, 344, 350, 379, 427, 440
CviKI_1 RGCY 7 cut(s) 143, 294, 344, 350, 379, 427, 440
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Ecl136II GAGCTC 1 cut(s) 379
Eco24I GRGCYC 2 cut(s) 296, 381
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 3 cut(s) 258, 344, 407
Eco88I CYCGRG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 379
EcoO109I RGGNCCY 2 cut(s) 292, 293
EcoT22I ATGCAT 1 cut(s) 308
EcoT38I GRGCYC 2 cut(s) 296, 381
FaeI CATG 4 cut(s) 11, 185, 401, 437
FatI CATG 4 cut(s) 7, 181, 397, 433
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 2 cut(s) 296, 381
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 3 cut(s) 27, 297, 347
GluI GCNGC 1 cut(s) 161
GsaI CCCAGC 2 cut(s) 143, 147
HaeIII GGCC 1 cut(s) 294
Hin1II CATG 4 cut(s) 11, 185, 401, 437
HinfI GANTC 1 cut(s) 355
HphI GGTGA 4 cut(s) 69, 170, 212, 375
HpyAV CCTTC 3 cut(s) 233, 396, 431
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 4 cut(s) 11, 185, 401, 437
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 406, 437
LpnPI CCDG 5 cut(s) 82, 93, 129, 153, 417
Lsp1109I GCAGC 1 cut(s) 147
MaeI CTAG 3 cut(s) 27, 297, 347
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 3, 29, 445
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 3 cut(s) 167, 215, 350
MhlI GDGCHC 2 cut(s) 296, 381
MluCI AATT 2 cut(s) 152, 459
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 2 cut(s) 119, 205
Mph1103I ATGCAT 1 cut(s) 308
MseI TTAA 1 cut(s) 463
MspA1I CMGCKG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 341
NdeII GATC 1 cut(s) 262
NlaIII CATG 4 cut(s) 11, 185, 401, 437
NlaIV GGNNCC 4 cut(s) 255, 293, 294, 439
NsiI ATGCAT 1 cut(s) 308
NspI RCATGY 1 cut(s) 11
PciI ACATGT 1 cut(s) 7
PfeI GAWTC 1 cut(s) 355
PflMI CCANNNNNTGG 1 cut(s) 434
PkrI GCNGC 1 cut(s) 162
PscI ACATGT 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 381
PspFI CCCAGC 2 cut(s) 139, 143
PspN4I GGNNCC 4 cut(s) 255, 293, 294, 439
PspOMI GGGCCC 1 cut(s) 292
PspPI GGNCC 2 cut(s) 292, 293
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 463
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 2 cut(s) 292, 293
SduI GDGCHC 2 cut(s) 296, 381
SetI ASST 7 cut(s) 71, 82, 145, 210, 352, 381, 388
SpeI ACTAGT 1 cut(s) 26
Sse9I AATT 2 cut(s) 152, 459
SspMI CTAG 3 cut(s) 27, 297, 347
SstI GAGCTC 1 cut(s) 381
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 152, 459
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 463
Tru9I TTAA 1 cut(s) 463
TseI GCWGC 1 cut(s) 160
Van91I CCANNNNNTGG 1 cut(s) 434
XapI RAATTY 2 cut(s) 152, 459
XceI RCATGY 1 cut(s) 11
XspI CTAG 3 cut(s) 27, 297, 347
Zsp2I ATGCAT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.