Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Forward (+)

22630901 .. 22633252

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG222000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAAGTAACAGTGGCTACTAGAGTAGCCCTGAGCCTTGTCTTTGTTAGCATAATAGTAAGATGGGTATGGAGTCTTCTGGATTGGGTGTGGCTTAAGCCGAAGAAGCTCGAAAGATGTTTGAGGCAGCAAGGCTTTAAAGGCAATTCTTACAGGCTTTTGTATGGAGACATGAAGGAGAACGCTATCATGCTCAAACAAGCAAAATCCAAACCCATGAACCTCTCAACCTCCCATGACATAGCACCCCGAGTCACTCCTCTACTGGATAAAACTGTGAAAACTTACGGTAAGAACTCTTTTGTGTGGATTGGGCCCGTGCCAAGGGTGAACATTATGAATCCAGAAGATTTGAAAGATATCTTCGCAAAACATACTGATTTTCAAAAGCCAGCTTCAAACCCACTTGCGAAGTTGCTAGTAACAGGCCTTGCAAACTATGAAGGGGAGAAGTGGGCTAAACACAGACGGATTATCAACCCAACGTTCCATTCTGAGAAGCTAAAGCGTATGTTGCCAGCATTTTACCAAAGTTGTAATGACATGATTAAGGAATGGGAGACAGCGGTGTCCAACGAGAGTTCATCATCTGCATTTGATGTTTGTACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

204

Amino Acids

23.43

Weight (kDa)

9.63

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	89 - 194	7.3e-14	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	568
AciI	CCGC	1 cut(s)	566
AclI	AACGTT	1 cut(s)	485
AfaI	GTAC	1 cut(s)	607
AfiI	CCNNNNNNNGG	1 cut(s)	324
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	355, 386, 399
AjuI	GAANNNNNNNTTGG	2 cut(s)	475, 507
AluBI	AGCT	3 cut(s)	109, 395, 502
AluI	AGCT	3 cut(s)	109, 395, 502
Alw26I	GTCTC	2 cut(s)	162, 554
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	2 cut(s)	314, 427
ApaI	GGGCCC	1 cut(s)	318
ApeKI	GCWGC	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	314, 315
AsuHPI	GGTGA	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	318
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	162, 554
BfaI	CTAG	2 cut(s)	21, 419
BfrI	CTTAAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	2 cut(s)	314, 315
BmiI	GGNNCC	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	323
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	23, 486
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	139
BshFI	GGCC	2 cut(s)	316, 429
BsiHKCI	CYCGRG	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	2 cut(s)	162, 554
BsnI	GGCC	2 cut(s)	316, 429
BsoBI	CYCGRG	1 cut(s)	249
Bsp120I	GGGCCC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	566
BspANI	GGCC	2 cut(s)	316, 429
BspCNI	CTCAG	2 cut(s)	24, 487
BspLI	GGNNCC	1 cut(s)	316
BspTI	CTTAAG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	323
Bst4CI	ACNGT	3 cut(s)	13, 277, 290
BstAFI	CTTAAG	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	393, 519
BstDEI	CTNAG	2 cut(s)	32, 495
BstMAI	GTCTC	2 cut(s)	162, 554
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 141, 514
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	316, 429
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	393, 519
Cfr13I	GGNCC	2 cut(s)	314, 315
Csp6I	GTAC	1 cut(s)	606
CviAII	CATG	5 cut(s)	172, 190, 217, 236, 544
CviQI	GTAC	1 cut(s)	606
DdeI	CTNAG	2 cut(s)	32, 495
DraI	TTTAAA	1 cut(s)	139
DrdI	GACNNNNNNGTC	1 cut(s)	568
DseDI	GACNNNNNNGTC	1 cut(s)	568
Eco130I	CCWWGG	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	361
Eco88I	CYCGRG	1 cut(s)	249
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	5 cut(s)	175, 193, 220, 239, 547
FatI	CATG	5 cut(s)	171, 189, 216, 235, 543
Fnu4HI	GCNGC	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	2 cut(s)	21, 419
GluI	GCNGC	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	316, 429
Hin1II	CATG	5 cut(s)	175, 193, 220, 239, 547
HinfI	GANTC	3 cut(s)	73, 252, 340
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	2 cut(s)	80, 344
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	169, 437
HpyCH4III	ACNGT	3 cut(s)	13, 277, 290
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	2 cut(s)	434, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 141, 514
HpyF3I	CTNAG	2 cut(s)	32, 495
HpySE526I	ACGT	1 cut(s)	485
Hsp92II	CATG	5 cut(s)	175, 193, 220, 239, 547
LpnPI	CCDG	8 cut(s)	44, 65, 139, 251, 357, 405, 411, 531
Lsp1109I	GCAGC	1 cut(s)	139
MaeI	CTAG	2 cut(s)	21, 419
MaeII	ACGT	1 cut(s)	485
MaeIII	GTNAC	3 cut(s)	7, 253, 421
MboII	GAAGA	4 cut(s)	68, 115, 355, 359
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	82, 261
MmeI	TCCRAC	1 cut(s)	597
MnlI	CCTC	4 cut(s)	117, 233, 241, 270
MseI	TTAA	3 cut(s)	96, 138, 549
MspA1I	CMGCKG	1 cut(s)	566
MspCI	CTTAAG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	106, 141, 514
NlaIII	CATG	5 cut(s)	175, 193, 220, 239, 547
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	2 cut(s)	81, 260
PpsI	GAGTC	2 cut(s)	81, 260
Psp1406I	AACGTT	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	316
PspOMI	GGGCCC	1 cut(s)	314
PspPI	GGNCC	2 cut(s)	314, 315
RsaI	GTAC	1 cut(s)	607
RsaNI	GTAC	1 cut(s)	606
SaqAI	TTAA	3 cut(s)	96, 138, 549
SatI	GCNGC	1 cut(s)	128
Sau96I	GGNCC	2 cut(s)	314, 315
SchI	GAGTC	2 cut(s)	82, 261
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	111, 225, 233, 397, 488, 504
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	145
SseBI	AGGCCT	1 cut(s)	429
SsiI	CCGC	1 cut(s)	566
SspMI	CTAG	2 cut(s)	21, 419
StuI	AGGCCT	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	3 cut(s)	13, 277, 290
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	3 cut(s)	96, 138, 549
Tru9I	TTAA	3 cut(s)	96, 138, 549
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	5 cut(s)	188, 233, 353, 456, 573
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	18
Vha464I	CTTAAG	1 cut(s)	95
XspI	CTAG	2 cut(s)	21, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.