pycom11g24190

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
27183119 .. 27183538
420 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g24190.1

Sequence Viewer

Length: 420 bp
ATGATTTTACTTGAAGCTCTACGATTATACCCACCAGTTGTTATGCTCACTCGAATGATTCACAAGAAAACACAATTTGTAGAATTCTCACTACCGGCTGGGGCCGAAATTTCCTTGCCCACAGTACTAGTTCACCATGACAAAGATTTGTGGTGTGATGATGCAACGCAGTTTAAGCCAGAGAGGTTTTCAGATGGAGTTTCAAAAGCAACAAAGAACAAACTTATATACTTCCCTTTTGGAGGGGGTGCACGGATTTGCATTGGACAAAACTTTGCTATGATGGAAGCAAAACTGGCCTTAGCATTGATCTTACAACACTTCACCTTTGAGCTTTCTCCATGCTATGCTCATGCTCCTTCTAGAAAAATCACCCTTCAACCACAGTTTGGTGCCCATATCATTTTACACAAACTTTGA

Protein Analysis

140

Amino Acids

15.69

Weight (kDa)

9.07

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 114 3.7e-36 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 389
AcsI RAATTY 2 cut(s) 83, 108
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 242, 389
AgsI TTSAA 3 cut(s) 14, 204, 380
AhlI ACTAGT 1 cut(s) 127
AluBI AGCT 2 cut(s) 17, 334
AluI AGCT 2 cut(s) 17, 334
Alw21I GWGCWC 1 cut(s) 253
Alw44I GTGCAC 1 cut(s) 249
AoxI GGCC 2 cut(s) 102, 297
ApaLI GTGCAC 1 cut(s) 249
ApoI RAATTY 2 cut(s) 83, 108
AspS9I GGNCC 1 cut(s) 102
AsuHPI GGTGA 3 cut(s) 125, 316, 364
BaeGI GKGCMC 2 cut(s) 253, 397
BanI GGYRCC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 253
BccI CCATC 2 cut(s) 188, 277
BcuI ACTAGT 1 cut(s) 127
BfaI CTAG 2 cut(s) 128, 363
BmcAI AGTACT 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 103, 394
BmsI GCATC 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 301
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 389
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 35, 300
BseLI CCNNNNNNNGG 2 cut(s) 242, 389
BseNI ACTGG 2 cut(s) 35, 300
BseSI GKGCMC 2 cut(s) 253, 397
BseYI CCCAGC 1 cut(s) 98
BshFI GGCC 2 cut(s) 104, 299
BshNI GGYRCC 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 242, 389
BsnI GGCC 2 cut(s) 104, 299
Bsp1286I GDGCHC 2 cut(s) 253, 397
Bsp143I GATC 1 cut(s) 309
BspANI GGCC 2 cut(s) 104, 299
BspLI GGNNCC 2 cut(s) 103, 394
BspT107I GGYRCC 1 cut(s) 392
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 2 cut(s) 35, 300
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 1 cut(s) 309
Bst4CI ACNGT 2 cut(s) 124, 387
BstDEI CTNAG 1 cut(s) 301
BstENI CCTNNNNNAGG 1 cut(s) 240
BstKTI GATC 1 cut(s) 312
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 2 cut(s) 175, 296
BstSLI GKGCMC 2 cut(s) 253, 397
BsuRI GGCC 2 cut(s) 104, 299
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 125
CviAII CATG 3 cut(s) 137, 342, 353
CviJI RGCY 6 cut(s) 17, 98, 104, 178, 299, 334
CviKI_1 RGCY 6 cut(s) 17, 98, 104, 178, 299, 334
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 301
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoRI GAATTC 1 cut(s) 83
FaeI CATG 3 cut(s) 140, 345, 356
FatI CATG 3 cut(s) 136, 341, 352
FspBI CTAG 2 cut(s) 128, 363
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 104, 299
HapII CCGG 1 cut(s) 95
Hin1II CATG 3 cut(s) 140, 345, 356
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 95
HphI GGTGA 3 cut(s) 125, 316, 364
Hpy166II GTNNAC 2 cut(s) 133, 251
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 363
Hpy8I GTNNAC 2 cut(s) 133, 251
HpyAV CCTTC 2 cut(s) 369, 386
HpyCH4III ACNGT 2 cut(s) 124, 387
HpyCH4V TGCA 3 cut(s) 164, 251, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 296
HpyF3I CTNAG 1 cut(s) 301
Hsp92II CATG 3 cut(s) 140, 345, 356
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 5 cut(s) 48, 84, 108, 192, 281
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 128, 363
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MhlI GDGCHC 2 cut(s) 253, 397
MluCI AATT 3 cut(s) 74, 83, 108
MnlI CCTC 2 cut(s) 177, 236
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 175, 296
NdeII GATC 1 cut(s) 309
NlaIII CATG 3 cut(s) 140, 345, 356
NlaIV GGNNCC 2 cut(s) 103, 394
PfeI GAWTC 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 98
PspN4I GGNNCC 2 cut(s) 103, 394
PspPI GGNCC 1 cut(s) 102
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 1 cut(s) 102
ScaI AGTACT 1 cut(s) 126
SduI GDGCHC 2 cut(s) 253, 397
SetI ASST 4 cut(s) 19, 188, 329, 336
SfaNI GCATC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 53
SpeI ACTAGT 1 cut(s) 127
Sse9I AATT 3 cut(s) 74, 83, 108
SspMI CTAG 2 cut(s) 128, 363
TaaI ACNGT 2 cut(s) 124, 387
TaqI TCGA 1 cut(s) 52
TasI AATT 3 cut(s) 74, 83, 108
TatI WGTACW 1 cut(s) 124
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TspGWI ACGGA 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 389
VneI GTGCAC 1 cut(s) 249
XagI CCTNNNNNAGG 1 cut(s) 240
XapI RAATTY 2 cut(s) 83, 108
XbaI TCTAGA 1 cut(s) 362
XspI CTAG 2 cut(s) 128, 363
ZrmI AGTACT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.