Rroxscaffold_1G00051080

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
71561018 .. 71564045
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051080.1

Sequence Viewer

Length: 1047 bp
ATGAAGGGGGAGAAGTGGGCTAAACACAGACGGATTATCAACCCAACGTTCCATTCTGAGAAGCTAAAGCGTATGTTGCCAGCATTTTACCAAAGTTGTAATGACATGATTACGGAATGGGAGACAGCGGTGTCCAAGGAGAGTTCATCATCTGCATTTGATGTCTGGCCTTCTCTCCAAAATTTAACAGCTGATGTGATTTCTCGGACAGCATTTGGAAGTAGCTATCATGAAGGAAGAAAAATATTTGAACTCCTAAAAGAGCAAGCAATATATGCAATAAAAACCATACAAAGTGTTTACATTCCAGGATGGAGGTTTGTACCAACTAAGATGAACAAGAGGATGAAACAAATTGACGAAGAAATAAGAGGTTTACTCAAGGGTATTATAAATAAAAGAGAGCAAGCCATTATGGCAGGTGAAGCAACCAAAGATGACTTATTAGGTGCACTTATGGAGTCGAATTTGAATGACATTCGGGATCATGGGAAGAACAACAAAAATGTTGGGATGAGTATCGAAGATGTAATTGAAGAATGTAAGCTTTTTTACTTTGCTGGGCAAGAGACCACTTCAGTGTTATTGGTTTGGACAATGGTACTACTCTGTCAAAATCAGAATTGGCAAGATCAAGCAAGAGAAGAGGTTTTGCAAGTCTTTGGAATGAACAAGCCAGACTTTGATGGTCTAACTCACCTAAAAGTTGTAACCATGATTTTACTTGAAGTTTTACGATTATACCCAGCAGTAGTTGTGCTTTCTCGAACCACTCATAAGAAAATACAACTTGGAAAATTCACACTACCAGCTGGAGTTGAAATCGGGTTACCAACACTGCTCATTCATCATGACAAGGAAATGTGGGGTGATGATGCAAAAGAGTTCAGGCCCGAGAGGTTTTTCAGAAGGAGTTTCCAAGGCAACAAAGAGCCAGCTCTCATTCTTCCCTTTCGGAGGAGGTCCTCGGATTTGCATTGGACAAAATTTTGCTATGACGGAAGCGAAACTGGCCTTGGCATTGATCTTGCAACACTTCACATTTGA

Protein Analysis

348

Amino Acids

40.06

Weight (kDa)

8.51

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 318 2.9e-58 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
AarI CACCTGC 1 cut(s) 410
AasI GACNNNNNNGTC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 410
AciI CCGC 1 cut(s) 128
AclI AACGTT 1 cut(s) 47
AclWI GGATC 1 cut(s) 492
AcsI RAATTY 4 cut(s) 181, 466, 797, 986
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 2 cut(s) 324, 603
AfiI CCNNNNNNNGG 1 cut(s) 957
AgsI TTSAA 5 cut(s) 251, 472, 536, 728, 821
AjnI CCWGG 1 cut(s) 307
AjuI GAANNNNNNNTTGG 4 cut(s) 37, 69, 999, 1031
AleI CACNNNNGTG 1 cut(s) 578
AluBI AGCT 6 cut(s) 64, 191, 225, 547, 812, 938
AluI AGCT 6 cut(s) 64, 191, 225, 547, 812, 938
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 2 cut(s) 116, 563
Alw44I GTGCAC 1 cut(s) 450
AlwI GGATC 1 cut(s) 492
Ama87I CYCGRG 1 cut(s) 893
AoxI GGCC 3 cut(s) 167, 890, 1012
ApaLI GTGCAC 1 cut(s) 450
ApoI RAATTY 4 cut(s) 181, 466, 797, 986
AspS9I GGNCC 2 cut(s) 891, 963
AsuHPI GGTGA 3 cut(s) 434, 689, 881
AvaI CYCGRG 1 cut(s) 893
AvaII GGWCC 1 cut(s) 963
BaeGI GKGCMC 1 cut(s) 454
Bbv12I GWGCWC 1 cut(s) 454
BccI CCATC 2 cut(s) 306, 680
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 2 cut(s) 116, 563
BfuAI ACCTGC 1 cut(s) 410
BglI GCCNNNNNGGC 1 cut(s) 416
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 963
BmeT110I CYCGRG 1 cut(s) 893
BmgT120I GGNCC 2 cut(s) 891, 963
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 865
BplI GAGNNNNNCTC 2 cut(s) 363, 395
BpmI CTGGAG 1 cut(s) 834
BpuEI CTTGAG 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 518
BsaI GGTCTC 1 cut(s) 563
BsaJI CCNNGG 4 cut(s) 135, 919, 966, 1015
Bsc4I CCNNNNNNNGG 1 cut(s) 957
Bse1I ACTGG 1 cut(s) 1015
Bse8I GATNNNNATC 1 cut(s) 518
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 4 cut(s) 135, 919, 966, 1015
BseGI GGATG 3 cut(s) 317, 351, 519
BseJI GATNNNNATC 1 cut(s) 518
BseLI CCNNNNNNNGG 1 cut(s) 957
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 1015
BseRI GAGGAG 1 cut(s) 973
BseSI GKGCMC 1 cut(s) 454
BseYI CCCAGC 2 cut(s) 560, 745
BshFI GGCC 3 cut(s) 169, 892, 1014
BsiHKAI GWGCWC 1 cut(s) 454
BsiHKCI CYCGRG 1 cut(s) 893
BslI CCNNNNNNNGG 1 cut(s) 957
BsmAI GTCTC 2 cut(s) 116, 563
BsnI GGCC 3 cut(s) 169, 892, 1014
Bso31I GGTCTC 1 cut(s) 563
BsoBI CYCGRG 1 cut(s) 893
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 3 cut(s) 484, 631, 1024
BspACI CCGC 1 cut(s) 128
BspANI GGCC 3 cut(s) 169, 892, 1014
BspCNI CTCAG 1 cut(s) 49
BspHI TCATGA 2 cut(s) 229, 850
BspMI ACCTGC 1 cut(s) 410
BspPI GGATC 1 cut(s) 492
BspTNI GGTCTC 1 cut(s) 563
BsrI ACTGG 1 cut(s) 1015
BssECI CCNNGG 4 cut(s) 135, 919, 966, 1015
BssMI GATC 3 cut(s) 484, 631, 1024
BssT1I CCWWGG 3 cut(s) 135, 919, 1015
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 639
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 4 cut(s) 81, 267, 408, 936
BstDEI CTNAG 2 cut(s) 57, 330
BstEII GGTNACC 1 cut(s) 828
BstENI CCTNNNNNAGG 1 cut(s) 955
BstF5I GGATG 3 cut(s) 317, 351, 519
BstKTI GATC 3 cut(s) 487, 634, 1027
BstMAI GTCTC 2 cut(s) 116, 563
BstMBI GATC 3 cut(s) 484, 631, 1024
BstMWI GCNNNNNNNGC 5 cut(s) 76, 275, 416, 425, 1011
BstNI CCWGG 1 cut(s) 309
BstPI GGTNACC 1 cut(s) 828
BstSCI CCNGG 1 cut(s) 307
BstSLI GKGCMC 1 cut(s) 454
BsuRI GGCC 3 cut(s) 169, 892, 1014
BtsCI GGATG 3 cut(s) 317, 351, 519
BtsI GCAGTG 1 cut(s) 836
BtsIMutI CAGTG 2 cut(s) 585, 836
BveI ACCTGC 1 cut(s) 410
Cac8I GCNNGC 4 cut(s) 81, 267, 408, 936
CciI TCATGA 2 cut(s) 229, 850
Cfr13I GGNCC 2 cut(s) 891, 963
Csp6I GTAC 2 cut(s) 323, 602
CviAII CATG 5 cut(s) 106, 230, 488, 715, 851
CviQI GTAC 2 cut(s) 323, 602
DdeI CTNAG 2 cut(s) 57, 330
DpnI GATC 3 cut(s) 486, 633, 1026
DpnII GATC 3 cut(s) 484, 631, 1024
DrdI GACNNNNNNGTC 1 cut(s) 130
DseDI GACNNNNNNGTC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco130I CCWWGG 3 cut(s) 135, 919, 1015
Eco31I GGTCTC 1 cut(s) 563
Eco47I GGWCC 1 cut(s) 963
Eco57I CTGAAG 1 cut(s) 561
Eco88I CYCGRG 1 cut(s) 893
Eco91I GGTNACC 1 cut(s) 828
EcoNI CCTNNNNNAGG 1 cut(s) 955
EcoO109I RGGNCCY 1 cut(s) 963
EcoO65I GGTNACC 1 cut(s) 828
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 3 cut(s) 135, 919, 1015
ErhI CCWWGG 3 cut(s) 135, 919, 1015
FaeI CATG 5 cut(s) 109, 233, 491, 718, 854
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FatI CATG 5 cut(s) 105, 229, 487, 714, 850
FokI GGATG 3 cut(s) 324, 358, 526
GsaI CCCAGC 2 cut(s) 564, 749
GsuI CTGGAG 1 cut(s) 834
HaeIII GGCC 3 cut(s) 169, 892, 1014
Hin1II CATG 5 cut(s) 109, 233, 491, 718, 854
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 1 cut(s) 461
HphI GGTGA 3 cut(s) 434, 689, 881
Hpy166II GTNNAC 3 cut(s) 301, 377, 452
Hpy188I TCNGA 6 cut(s) 58, 207, 621, 908, 957, 970
Hpy188III TCNNGA 4 cut(s) 230, 482, 765, 851
Hpy8I GTNNAC 3 cut(s) 301, 377, 452
HpyAV CCTTC 3 cut(s) 180, 227, 903
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 7 cut(s) 155, 278, 452, 655, 878, 976, 1031
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 275, 416, 425, 1011
HpyF3I CTNAG 2 cut(s) 57, 330
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 5 cut(s) 109, 233, 491, 718, 854
Kzo9I GATC 3 cut(s) 484, 631, 1024
LweI GCATC 1 cut(s) 865
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 709, 828
MalI GATC 3 cut(s) 486, 633, 1026
MboI GATC 3 cut(s) 484, 631, 1024
MboII GAAGA 7 cut(s) 249, 374, 505, 536, 548, 656, 938
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 7 cut(s) 181, 354, 466, 531, 622, 797, 986
MlyI GAGTC 1 cut(s) 470
MnlI CCTC 8 cut(s) 309, 336, 365, 640, 891, 951, 954, 976
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 3 cut(s) 128, 191, 812
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 5 cut(s) 76, 275, 416, 425, 1011
NdeII GATC 3 cut(s) 484, 631, 1024
NlaIII CATG 5 cut(s) 109, 233, 491, 718, 854
OliI CACNNNNGTG 1 cut(s) 578
PagI TCATGA 2 cut(s) 229, 850
PaqCI CACCTGC 1 cut(s) 410
PfoI TCCNGGA 1 cut(s) 307
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
PpuMI RGGWCCY 1 cut(s) 963
PsiI TTATAA 1 cut(s) 392
Psp1406I AACGTT 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 963
Psp6I CCWGG 1 cut(s) 307
PspEI GGTNACC 1 cut(s) 828
PspFI CCCAGC 2 cut(s) 560, 745
PspGI CCWGG 1 cut(s) 307
PspPI GGNCC 2 cut(s) 891, 963
PspPPI RGGWCCY 1 cut(s) 963
PvuII CAGCTG 2 cut(s) 191, 812
RsaI GTAC 2 cut(s) 324, 603
RsaNI GTAC 2 cut(s) 323, 602
RseI CAYNNNNRTG 1 cut(s) 578
SaqAI TTAA 1 cut(s) 185
Sau3AI GATC 3 cut(s) 484, 631, 1024
Sau96I GGNCC 2 cut(s) 891, 963
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 454
SfaNI GCATC 1 cut(s) 865
SinI GGWCC 1 cut(s) 963
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 7 cut(s) 181, 354, 466, 531, 622, 797, 986
SsiI CCGC 1 cut(s) 128
SspI AATATT 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 3 cut(s) 135, 919, 1015
TaiI ACGT 1 cut(s) 50
TaqI TCGA 3 cut(s) 464, 522, 766
TasI AATT 7 cut(s) 181, 354, 466, 531, 622, 797, 986
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 2 cut(s) 585, 843
TspDTI ATGAA 7 cut(s) 17, 135, 246, 350, 362, 683, 836
TspGWI ACGGA 3 cut(s) 46, 128, 1014
TspRI CASTG 2 cut(s) 585, 843
VneI GTGCAC 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 963
XagI CCTNNNNNAGG 1 cut(s) 955
XapI RAATTY 4 cut(s) 181, 466, 797, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.