Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Forward (+)

23874867 .. 23875304

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG202900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATGCCTCAGGTAACCAGGATTTTACTTGAAGTTTTACGATTATACCCAGCAGTAGTTGTGCTTTCTCGAACCACTCATAAGAAAATACAACTTGGAAAATTCACACTACCAGCTGGAGTTGAAATCGGGTTACCAACACTGCTCATTCATCATGACAAGGAAATGTGGGGTGATGATGCAAAAGAGTTCAAGCCCGAGAGGTTTTCAGAAGGAGTTTCCAAGGCAACAAAGAGCCAGCTCTCATTCTTCCCTTTCGGAGGAGGTCCTCGGATTTGCATTGGACAAAATTTTGCTATGACGGAAGCGAAACTGGCCTTGGCATTGATCTTGCAACACTTCACATTTGAGCTTTCTCCATCTTATGCTCATGCTCCTTCTAACATCATAACCCTTCAACCACAGTATGGTGCTTCTATCATGTTACATAAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

145

Amino Acids

16.2

Weight (kDa)

9.52

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 123	4.2e-37	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	407
AclI	AACGTT	1 cut(s)	433
AcsI	RAATTY	2 cut(s)	101, 289
AfiI	CCNNNNNNNGG	2 cut(s)	260, 407
AgsI	TTSAA	4 cut(s)	32, 125, 193, 398
AjnI	CCWGG	1 cut(s)	17
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	3 cut(s)	116, 241, 352
AluI	AGCT	3 cut(s)	116, 241, 352
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	1 cut(s)	315
ApoI	RAATTY	2 cut(s)	101, 289
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	266
AxyI	CCTNAGG	1 cut(s)	9
BccI	CCATC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	222, 269, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 407
Bse1I	ACTGG	1 cut(s)	318
Bse21I	CCTNAGG	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	3 cut(s)	222, 269, 318
BseLI	CCNNNNNNNGG	2 cut(s)	260, 407
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	276
BseYI	CCCAGC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	260, 407
BsnI	GGCC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	327
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	3 cut(s)	222, 269, 318
BssMI	GATC	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	222, 318
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	9
BstEII	GGTNACC	2 cut(s)	13, 132
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	1 cut(s)	19
BstPI	GGTNACC	2 cut(s)	13, 132
BstSCI	CCNGG	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	239
CciI	TCATGA	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	266
CviAII	CATG	3 cut(s)	155, 371, 421
CviJI	RGCY	6 cut(s)	116, 196, 237, 241, 317, 352
CviKI_1	RGCY	6 cut(s)	116, 196, 237, 241, 317, 352
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	222, 318
Eco47I	GGWCC	1 cut(s)	266
Eco81I	CCTNAGG	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	197
Eco91I	GGTNACC	2 cut(s)	13, 132
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	266
EcoO65I	GGTNACC	2 cut(s)	13, 132
EcoRII	CCWGG	1 cut(s)	17
EcoT14I	CCWWGG	2 cut(s)	222, 318
ErhI	CCWWGG	2 cut(s)	222, 318
FaeI	CATG	3 cut(s)	158, 374, 424
FatI	CATG	3 cut(s)	154, 370, 420
GsaI	CCCAGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	317
Hin1II	CATG	3 cut(s)	158, 374, 424
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	3 cut(s)	211, 260, 273
Hpy188III	TCNNGA	2 cut(s)	69, 155
HpyAV	CCTTC	3 cut(s)	206, 387, 404
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	3 cut(s)	182, 279, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	3 cut(s)	158, 374, 424
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	7 cut(s)	4, 31, 63, 102, 126, 251, 299
LweI	GCATC	1 cut(s)	169
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	3 cut(s)	13, 132, 423
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	1 cut(s)	241
MluCI	AATT	2 cut(s)	101, 289
MnlI	CCTC	5 cut(s)	18, 195, 254, 257, 279
MspA1I	CMGCKG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	3 cut(s)	158, 374, 424
PagI	TCATGA	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	407
PpuMI	RGGWCCY	1 cut(s)	266
Psp1406I	AACGTT	1 cut(s)	433
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	17
PspEI	GGTNACC	2 cut(s)	13, 132
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	266
PspPPI	RGGWCCY	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	7 cut(s)	15, 118, 206, 243, 268, 354, 436
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	266
Sse9I	AATT	2 cut(s)	101, 289
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	2 cut(s)	222, 318
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	1 cut(s)	70
TasI	AATT	2 cut(s)	101, 289
TscAI	CASTG	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	147
Van91I	CCANNNNNTGG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	2 cut(s)	101, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.