Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005178.1

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Forward (+)

725 .. 2231

Gene Structure 1507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005178.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atggaagtagcagtggctagttgggtagcactgagccttgtttttgttagcatagtagtaagatgggcatggggtgtgctggattggttatggctgaagccgaagaagcttgaaagatatttgagggagcaaggccttaaaggcaattcctacaggctcttttatggagacatgaaggaaaactctgtcatgctcgcacaagcaaaatccaaacccatgaacctctcaagctcccatgacatagcatcacgattcatcccttttctcgatcaaaccgtgaaaacttacggtaaaaactcttttgtttggattggccccataccaagggtgaacattatggatcctgaagatgtgaaagatgtcttcacaaaactagatgatttccggaggccagcaacaaatccacttatcaagttgctaataacaggtattgcaagctatgaagatgagaaatgggctaaacatagaagaatcatcaacccaacgttccatgcagagaagctaaagcgtatgttaccggcatttcaccaaagttgtgatcagatgattaaggagtgggagagctgggtctcaaaacagggttcatcatgtgagttggatgtctggccttctcttcaaaatttaacggctgatgcgatttctcgaacagcgtttggaagtagctatgaagaaggtagaaaaatatttaaactcctaaaagagcaaacagcatacacaataaaaagcttgcaaagtgtttacattccaggatggaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

252

Amino Acids

29.2

Weight (kDa)

9.44

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	384
AclI	AACGTT	1 cut(s)	485
AclWI	GGATC	2 cut(s)	335, 348
AcsI	RAATTY	1 cut(s)	619
AcuI	CTGAAG	2 cut(s)	116, 366
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	113, 617
AjnI	CCWGG	1 cut(s)	745
AluBI	AGCT	7 cut(s)	109, 231, 438, 502, 564, 663, 726
AluI	AGCT	7 cut(s)	109, 231, 438, 502, 564, 663, 726
Alw26I	GTCTC	2 cut(s)	162, 574
AlwI	GGATC	2 cut(s)	335, 348
Aor13HI	TCCGGA	1 cut(s)	384
AoxI	GGCC	4 cut(s)	133, 313, 389, 605
ApoI	RAATTY	1 cut(s)	619
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	340, 518
BamHI	GGATCC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	355
BccI	CCATC	2 cut(s)	57, 744
BceAI	ACGGC	1 cut(s)	642
BciT130I	CCWGG	1 cut(s)	747
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	162, 574
BfaI	CTAG	2 cut(s)	18, 374
BfmI	CTRYAG	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	747
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	316, 342
BmrFI	CCNGG	1 cut(s)	747
BmsI	GCATC	2 cut(s)	254, 622
BpiI	GAAGAC	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	574
BsaJI	CCNNGG	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse118I	RCCGGY	1 cut(s)	517
BseAI	TCCGGA	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	3 cut(s)	255, 604, 755
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	23
BseYI	CCCAGC	1 cut(s)	564
BshFI	GGCC	4 cut(s)	135, 315, 391, 607
BsiSI	CCGG	2 cut(s)	385, 518
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	2 cut(s)	162, 574
BsnI	GGCC	4 cut(s)	135, 315, 391, 607
Bso31I	GGTCTC	1 cut(s)	574
Bsp13I	TCCGGA	1 cut(s)	384
Bsp143I	GATC	3 cut(s)	268, 340, 538
BspANI	GGCC	4 cut(s)	135, 315, 391, 607
BspCNI	CTCAG	1 cut(s)	24
BspEI	TCCGGA	1 cut(s)	384
BspLI	GGNNCC	2 cut(s)	316, 342
BspPI	GGATC	2 cut(s)	335, 348
BspTNI	GGTCTC	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	3 cut(s)	268, 340, 538
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	2 cut(s)	277, 290
Bst6I	CTCTTC	1 cut(s)	618
BstC8I	GCNNGC	4 cut(s)	195, 393, 436, 728
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	3 cut(s)	255, 604, 755
BstKTI	GATC	3 cut(s)	271, 343, 541
BstMAI	GTCTC	2 cut(s)	162, 574
BstMBI	GATC	3 cut(s)	268, 340, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 141
BstNI	CCWGG	1 cut(s)	747
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuRI	GGCC	4 cut(s)	135, 315, 391, 607
BtsCI	GGATG	3 cut(s)	255, 604, 755
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	18, 29
Cac8I	GCNNGC	4 cut(s)	195, 393, 436, 728
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	314
CviAII	CATG	7 cut(s)	69, 172, 190, 217, 236, 491, 588
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	3 cut(s)	270, 342, 540
DpnII	GATC	3 cut(s)	268, 340, 538
DraI	TTTAAA	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	116, 366
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	7 cut(s)	72, 175, 193, 220, 239, 494, 591
FatI	CATG	7 cut(s)	68, 171, 189, 216, 235, 490, 587
FbaI	TGATCA	1 cut(s)	538
FokI	GGATG	2 cut(s)	242, 611
FspBI	CTAG	2 cut(s)	18, 374
GsaI	CCCAGC	1 cut(s)	568
HaeIII	GGCC	4 cut(s)	135, 315, 391, 607
HapII	CCGG	2 cut(s)	385, 518
Hin1II	CATG	7 cut(s)	72, 175, 193, 220, 239, 494, 591
HindIII	AAGCTT	2 cut(s)	107, 724
HinfI	GANTC	2 cut(s)	252, 471
HpaII	CCGG	2 cut(s)	385, 518
HphI	GGTGA	2 cut(s)	340, 518
Hpy166II	GTNNAC	2 cut(s)	331, 739
Hpy188I	TCNGA	1 cut(s)	543
Hpy188III	TCNNGA	5 cut(s)	249, 266, 344, 385, 642
Hpy8I	GTNNAC	2 cut(s)	331, 739
HpyAV	CCTTC	3 cut(s)	169, 618, 665
HpyCH4III	ACNGT	2 cut(s)	277, 290
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	3 cut(s)	434, 494, 730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 141
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	485
Hsp92II	CATG	7 cut(s)	72, 175, 193, 220, 239, 494, 591
Kpn2I	TCCGGA	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	268, 340, 538
LmnI	GCTCC	2 cut(s)	127, 236
LweI	GCATC	2 cut(s)	254, 622
MaeI	CTAG	2 cut(s)	18, 374
MaeII	ACGT	1 cut(s)	485
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	3 cut(s)	270, 342, 540
MboI	GATC	3 cut(s)	268, 340, 538
MboII	GAAGA	7 cut(s)	115, 355, 359, 455, 480, 605, 680
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	2 cut(s)	145, 619
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	4 cut(s)	117, 233, 381, 747
MroI	TCCGGA	1 cut(s)	384
MseI	TTAA	4 cut(s)	138, 549, 623, 687
MspI	CCGG	2 cut(s)	385, 518
MspR9I	CCNGG	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	2 cut(s)	106, 141
NdeII	GATC	3 cut(s)	268, 340, 538
NlaIII	CATG	7 cut(s)	72, 175, 193, 220, 239, 494, 591
NlaIV	GGNNCC	2 cut(s)	316, 342
PceI	AGGCCT	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 632
PfeI	GAWTC	2 cut(s)	252, 471
PfoI	TCCNGGA	1 cut(s)	745
Psp1406I	AACGTT	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	745
PspFI	CCCAGC	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	2 cut(s)	316, 342
PspPI	GGNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	340
SaqAI	TTAA	4 cut(s)	138, 549, 623, 687
Sau3AI	GATC	3 cut(s)	268, 340, 538
Sau96I	GGNCC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	747
SfaNI	GCATC	2 cut(s)	254, 622
SfcI	CTRYAG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	2 cut(s)	145, 619
SseBI	AGGCCT	1 cut(s)	135
SspI	AATATT	1 cut(s)	684
SspMI	CTAG	2 cut(s)	18, 374
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	277, 290
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	2 cut(s)	267, 643
TasI	AATT	2 cut(s)	145, 619
TfiI	GAWTC	2 cut(s)	252, 471
Tru1I	TTAA	4 cut(s)	138, 549, 623, 687
Tru9I	TTAA	4 cut(s)	138, 549, 623, 687
TscAI	CASTG	2 cut(s)	18, 36
TspDTI	ATGAA	6 cut(s)	188, 233, 244, 456, 573, 681
TspRI	CASTG	2 cut(s)	18, 36
XapI	RAATTY	1 cut(s)	619
XspI	CTAG	2 cut(s)	18, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.