Rh5CG220900

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
22447161 .. 22447718
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG220900.1

Sequence Viewer

Length: 558 bp
ATGTCTAGGTTTCTACCAACTAAAATGAACAAGAGGATGAAGAAAATTGACAAAGAGGTAAAAGGTTTACTTAAGGGTATAATAAATAAAAGAGAGAAGGCCATTGGGGCTGGTGAAGCCTCTAAAGATGACTTATTAGGTGCACTTATGGAGTCAAAATTCAAGGACATCCAAGGAGATGGGAAGGTTGGGATGAGTATTGAAGATGTAATTGAGGAATGTAAGCTGTTTTACTTTGCTGGGCAAGAGACTACTTCAGTATTGCTGGTTTGGACAATGATATTACTTGGTCAAAGTCAGAATTGGCAAGATCGAGCAAGACAAGAGGTATTGCAAGTCTTTGGAAGCAACAAGCCAGACTTTGATGGACTATCTCATCTAAAAGTAGTAAGTACACAATACATATATACTTCTTCAAAGTTGTCTTTCAATTATAATTGCATGAAATGGATCGGGATACCCACTATAAGAAATAAGGAACAATTTCTAGACAAAAAGGGATTGATGCATGATCTTACTTTTTTGTTGATTGTAATAGTTGATGTATGCTCTAGATGA

Protein Analysis

185

Amino Acids

21.09

Weight (kDa)

9.17

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 130 3.5e-21 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
AclWI GGATC 1 cut(s) 458
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 394
AflII CTTAAG 1 cut(s) 71
AgsI TTSAA 4 cut(s) 163, 203, 417, 430
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 1 cut(s) 242
Alw44I GTGCAC 1 cut(s) 141
AlwI GGATC 1 cut(s) 458
AoxI GGCC 1 cut(s) 99
ApaLI GTGCAC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 483
AsuHPI GGTGA 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 145
BccI CCATC 2 cut(s) 173, 359
BciVI GTATCC 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 3 cut(s) 6, 488, 552
BfrI CTTAAG 1 cut(s) 71
BfuI GTATCC 1 cut(s) 450
BglI GCCNNNNNGGC 1 cut(s) 107
BmsI GCATC 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 3 cut(s) 42, 168, 198
BseSI GKGCMC 1 cut(s) 145
BseYI CCCAGC 1 cut(s) 239
BshFI GGCC 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 3 cut(s) 310, 450, 511
BspANI GGCC 1 cut(s) 101
BspPI GGATC 1 cut(s) 458
BspTI CTTAAG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 3 cut(s) 310, 450, 511
BssT1I CCWWGG 1 cut(s) 172
BstAFI CTTAAG 1 cut(s) 71
BstF5I GGATG 3 cut(s) 42, 168, 198
BstKTI GATC 3 cut(s) 313, 453, 514
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 3 cut(s) 310, 450, 511
BstMWI GCNNNNNNNGC 2 cut(s) 107, 116
BstSLI GKGCMC 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 179
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 3 cut(s) 42, 168, 198
Csp6I GTAC 1 cut(s) 393
CviAII CATG 2 cut(s) 442, 509
CviJI RGCY 5 cut(s) 101, 110, 119, 226, 355
CviKI_1 RGCY 5 cut(s) 101, 110, 119, 226, 355
CviQI GTAC 1 cut(s) 393
DpnI GATC 3 cut(s) 312, 452, 513
DpnII GATC 3 cut(s) 310, 450, 511
Eco130I CCWWGG 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 2 cut(s) 445, 512
FalI AAGNNNNNCTT 4 cut(s) 54, 86, 344, 376
FatI CATG 2 cut(s) 441, 508
FokI GGATG 3 cut(s) 49, 155, 205
FspBI CTAG 3 cut(s) 6, 488, 552
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 1 cut(s) 101
Hin1II CATG 2 cut(s) 445, 512
HinfI GANTC 1 cut(s) 152
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 3 cut(s) 68, 143, 395
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 3 cut(s) 454, 488, 552
Hpy8I GTNNAC 3 cut(s) 68, 143, 395
HpyAV CCTTC 2 cut(s) 91, 178
HpyCH4V TGCA 4 cut(s) 143, 334, 441, 508
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 116
Hsp92II CATG 2 cut(s) 445, 512
Kzo9I GATC 3 cut(s) 310, 450, 511
LpnPI CCDG 4 cut(s) 96, 225, 251, 369
LweI GCATC 1 cut(s) 495
MaeI CTAG 3 cut(s) 6, 488, 552
MalI GATC 3 cut(s) 312, 452, 513
MboI GATC 3 cut(s) 310, 450, 511
MboII GAAGA 3 cut(s) 52, 215, 405
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 7 cut(s) 45, 158, 210, 301, 430, 436, 482
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 5 cut(s) 27, 49, 130, 208, 319
Mph1103I ATGCAT 1 cut(s) 510
MroXI GAANNNNTTC 1 cut(s) 483
MseI TTAA 1 cut(s) 72
MspCI CTTAAG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 107, 116
NdeII GATC 3 cut(s) 310, 450, 511
NlaIII CATG 2 cut(s) 445, 512
NsiI ATGCAT 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 483
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PsiI TTATAA 1 cut(s) 435
PspFI CCCAGC 1 cut(s) 239
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
SaqAI TTAA 1 cut(s) 72
Sau3AI GATC 3 cut(s) 310, 450, 511
SchI GAGTC 1 cut(s) 161
SduI GDGCHC 1 cut(s) 145
SetI ASST 7 cut(s) 11, 60, 67, 142, 189, 228, 330
SfaNI GCATC 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 7 cut(s) 45, 158, 210, 301, 430, 436, 482
SspMI CTAG 3 cut(s) 6, 488, 552
StyI CCWWGG 1 cut(s) 172
TaqI TCGA 1 cut(s) 313
TasI AATT 7 cut(s) 45, 158, 210, 301, 430, 436, 482
TatI WGTACW 1 cut(s) 392
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TspDTI ATGAA 3 cut(s) 41, 53, 458
Vha464I CTTAAG 1 cut(s) 71
VneI GTGCAC 1 cut(s) 141
XapI RAATTY 1 cut(s) 158
XbaI TCTAGA 2 cut(s) 487, 551
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 3 cut(s) 6, 488, 552
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.