pycom11g24200

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
27183983 .. 27184453
471 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g24200.1

Sequence Viewer

Length: 471 bp
ATGAATAAGAGGATGAAAGGAGTTGACAAAAAAATCAGAGAGTTACTCATGGGTATTATAAATAAAAGAGAAGAGGCGATCAAGGCAGGCAAAGCCACAAAAGATGACTTGTTAGGTTTGCTTTTGGATTCCAACTTCAAGGAAATTAAGGAACATGGGAACAAAAGAAAAGTTGGAATGAGCACTCAAGACGTTCTTGAGGAGTGCAAGCTGTTTTACTTTGCCGGGCAAGAGACCACTTCAGTATTGCTGGTTTGGACGATGGTTTTACTAAGTGAAAACCAGAATTGGCAAGATCGTGCAAGAGAAGAGGTTTTGCAAGTCTTTGGAGGCAACAAACCAGATTTTGATGGGCTAAATCACCTGAAAGTTGTAAGTATTGAATGCGTTTACATCTACATTTCACATTCAAAAAAAGAAACATTTACCTCAAAAACAAAAGTTCTATATGTACTTGAAAATTTTCGTTAG

Protein Analysis

157

Amino Acids

18.03

Weight (kDa)

8.98

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 125 5.1e-19 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 1 cut(s) 453
AgsI TTSAA 4 cut(s) 139, 383, 411, 458
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 460
Asp700I GAANNNNTTC 1 cut(s) 462
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 185
BccI CCATC 2 cut(s) 256, 344
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 226
BplI GAGNNNNNCTC 2 cut(s) 30, 62
BpuEI CTTGAG 2 cut(s) 171, 218
BpuMI CCSGG 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 227
BseGI GGATG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 389
Bso31I GGTCTC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 78, 295
BspTNI GGTCTC 1 cut(s) 227
BssMI GATC 2 cut(s) 78, 295
Bst6I CTCTTC 2 cut(s) 66, 303
BstC8I GCNNGC 2 cut(s) 88, 209
BstDEI CTNAG 1 cut(s) 272
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 2 cut(s) 81, 298
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 78, 295
BstMWI GCNNNNNNNGC 2 cut(s) 83, 92
BstSCI CCNGG 1 cut(s) 224
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 88, 209
Csp6I GTAC 1 cut(s) 452
CviAII CATG 2 cut(s) 49, 155
CviJI RGCY 3 cut(s) 95, 211, 355
CviKI_1 RGCY 3 cut(s) 95, 211, 355
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 1 cut(s) 272
DpnI GATC 2 cut(s) 80, 297
DpnII GATC 2 cut(s) 78, 295
Eam1104I CTCTTC 2 cut(s) 66, 303
EarI CTCTTC 2 cut(s) 66, 303
Eco31I GGTCTC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 225
FaeI CATG 2 cut(s) 52, 158
FaiI YATR 5 cut(s) 50, 59, 156, 448, 450
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FatI CATG 2 cut(s) 48, 154
FokI GGATG 1 cut(s) 25
HapII CCGG 1 cut(s) 225
Hin1II CATG 2 cut(s) 52, 158
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 25, 391
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 2 cut(s) 188, 197
Hpy8I GTNNAC 2 cut(s) 25, 391
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 207, 302, 319
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 92
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 2 cut(s) 52, 158
Kzo9I GATC 2 cut(s) 78, 295
LpnPI CCDG 6 cut(s) 72, 236, 238, 296, 354, 377
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 42
MalI GATC 2 cut(s) 80, 297
MboI GATC 2 cut(s) 78, 295
MboII GAAGA 2 cut(s) 83, 320
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 3 cut(s) 144, 286, 460
MmeI TCCRAC 2 cut(s) 154, 156
MnlI CCTC 6 cut(s) 3, 67, 193, 304, 323, 439
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 1 cut(s) 147
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 389
MwoI GCNNNNNNNGC 2 cut(s) 83, 92
NciI CCSGG 1 cut(s) 226
NdeII GATC 2 cut(s) 78, 295
NlaIII CATG 2 cut(s) 52, 158
PctI GAATGC 1 cut(s) 389
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 1 cut(s) 128
PsiI TTATAA 1 cut(s) 59
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
SaqAI TTAA 1 cut(s) 147
Sau3AI GATC 2 cut(s) 78, 295
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 185
SetI ASST 6 cut(s) 118, 195, 213, 315, 366, 431
SmlI CTYRAG 2 cut(s) 186, 197
SmoI CTYRAG 2 cut(s) 186, 197
Sse9I AATT 3 cut(s) 144, 286, 460
StyD4I CCNGG 1 cut(s) 224
TaiI ACGT 1 cut(s) 195
TasI AATT 3 cut(s) 144, 286, 460
TatI WGTACW 1 cut(s) 451
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 17, 29
XapI RAATTY 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.