Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Forward (+)

8154636 .. 8158300

Gene Structure 3665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0103700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1866 bp

ATGGAGGGCTCAAGCTTCTTGTCCCTGAAAGTTGCTCTGATACTGGTTTTCTTGTTGCATTACACAGCAGCTCATAGTCACAATAAGCATGCAGGCGACGGGGTTCAGCCGCTTTCCAAGGTTCAAATCCACAGAGCTGTTTATGAGCTTCATCAAAATGCTTCCCTCAAACCATACCCTGCACTTCTTGGTATGAAGGGAGAAGATTCTGAGTGGGTAACTGTGAAAGTTGATAGTCCTAATCCTTCTGGAGATGATTGGTTGGCAGTTTTTTCTCCTGCAAATTTCGACTCATCGACTTGTCCATCTACCGACTCCAGACAACAGGCTCCATACATATGCTCAGCTCCGATCAAGTACATGTTTGCGAATGATTCCAGTGCTGATTATACAAAGACTGGCAAAGGAACTTTCAAACTTCAGTTGATCAATCAAAGGGAAGGTTTTTCATTTGCATTGTTCTCAGGCGGGCTATCAAACCCAAAATTGGTGGCAGTTTCTAGTGCTATAAGTTTCTTGAATCCGAAAGCACCCCTTTACCCTCGTCTTGCTCAAGGAAAGCAATGGGATGAAATGACAGTAACCTGGACAAGTGGCTATAACATTGATGAAGCTGTACCTTTTGTTGAGTGGGGTCTAAAGGGAGAGGCTCAAACCCGATCTCCAGCAGGAACATTGACTTTTACACGAGAGAGCATGTGTGGTCCACCAGCTCGAACAGTTGGTTGGCGCGATCCTGGTTTCATCCACACTAGTTTCTTAAAGGACCTTTGGCCAAATTCATTGTACACTTACAAGCTCGGTCATAGGTCATCTAATGGTTCCTATATCTGGAGCAAGTCTTACTCTTTCAAGTCATCACCATATCCCGGTCAGGACTCATTACAGCGTGTAGTTATATTTGGAGACATGGGAAAGGCTGAGCGCGATGGTTCAAATGAATACAGTAATTATCAGCCGGGTTCACTCAATACCACTGATCAACTGATCAAGGACTTAGATAACATTGACATAGTTTTCCACATAGGAGACATTTCCTATGCCAATGGATACATCTCACAGTGGGACCAGTTCACATCACAGGTTGAGCCCATTGCATCGACTGTACCATATATGATTGCAAGTGGTAATCATGAACGAGATACACCAGGGACCGGATCCTTCTATAATGGTAATGATGCAGGTGGTGAATGTGGTGTGCTAGCTGAGACTATGTTTTATGTTCCTGCCGAGAACCGAGCTAAGTTCTGGTACTCAACAGATTATGGCATGTTCCACTTCTGTGTAGCTGACACTGAACATGACTGGAGGGAAGGAACTGAGCAGTACAAATTTATTGAGAAATGCCTTGCATCAGTTGACAGGCAGAAACAGCCTTGGCTGATATTCATTGCTCATCGTGTTCTTGGTTATTCCTCCGACTTATATTATGGGTTGGATGGTTCATTTGAAGAGCCAATGGGTAGGGAAAGCATGCAAAAGCTATGGCAAAAGTACAAGGTAGACATTGCTTTCTATGGCCATGTCCATAACTATGAAAGAATATGCCCCATTTACCAGAATCAATGTGTAAACACAGAAAAATCCCATTATTCCGGGACTGTGAATGGAACAATCCACATTGTTGTTGGAGGAGGAGGCAGTCACTTATCAGAATTTAGCCCAGTGCAGACCACTTGGAGCCTTCACAAAGATCATGACTTTGGCTTTGTAAAACTCACAGCATTTAACCACTCATCACTTCTCATGGAGTACAAGAAGAGCAGTGATGGTAATGTCTATGATTCCTTCACTATCTCAAGGGACTACAGGGATGTCTTGGCATGCGTGCATGACGGTTGTGAGCCAACTACCTTAGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

621

Amino Acids

69.48

Weight (kDa)

5.81

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_PAP	PF17808	59 - 174	1e-44	Fn3-like domain from Purple Acid Phosphatase
Pur_ac_phosph_N	PF16656	181 - 285	5e-13	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	297 - 512	1.5e-17	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	537 - 596	1.6e-15	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1172
Acc36I	ACCTGC	1 cut(s)	1172
AccI	GTMKAC	1 cut(s)	1503
AccII	CGCG	2 cut(s)	732, 927
AciI	CCGC	2 cut(s)	110, 468
AclWI	GGATC	3 cut(s)	728, 1152, 1165
AcoI	YGGCCR	2 cut(s)	773, 1519
AcsI	RAATTY	4 cut(s)	283, 778, 1331, 1655
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	8 cut(s)	359, 618, 788, 1107, 1253, 1328, 1496, 1754
AfiI	CCNNNNNNNGG	4 cut(s)	487, 831, 869, 1154
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	6 cut(s)	125, 415, 520, 853, 936, 1451
AhlI	ACTAGT	1 cut(s)	752
AjnI	CCWGG	3 cut(s)	584, 736, 1147
AjuI	GAANNNNNNNTTGG	2 cut(s)	709, 741
AleI	CACNNNNGTG	1 cut(s)	1281
Alw26I	GTCTC	3 cut(s)	900, 1023, 1202
AlwI	GGATC	3 cut(s)	728, 1152, 1165
AoxI	GGCC	2 cut(s)	773, 1519
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	4 cut(s)	283, 778, 1331, 1655
ArsI	GACNNNNNNTTYG	2 cut(s)	1691, 1723
AspLEI	GCGC	2 cut(s)	732, 927
AspS9I	GGNCC	4 cut(s)	704, 766, 1066, 1152
AsuC2I	CCSGG	3 cut(s)	870, 960, 1597
AsuHPI	GGTGA	2 cut(s)	852, 1199
AsuNHI	GCTAGC	1 cut(s)	1201
AvaII	GGWCC	4 cut(s)	704, 766, 1066, 1152
BalI	TGGCCA	2 cut(s)	775, 1521
BamHI	GGATCC	1 cut(s)	1157
BanII	GRGCYC	2 cut(s)	11, 1092
BauI	CACGAG	1 cut(s)	687
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	4 cut(s)	313, 923, 1433, 1763
BciT130I	CCWGG	3 cut(s)	586, 738, 1149
BciVI	GTATCC	1 cut(s)	1043
BclI	TGATCA	3 cut(s)	426, 979, 987
BcnI	CCSGG	3 cut(s)	870, 960, 1597
BcoDI	GTCTC	3 cut(s)	900, 1023, 1202
BcuI	ACTAGT	1 cut(s)	752
BfaI	CTAG	3 cut(s)	501, 753, 1202
BfmI	CTRYAG	1 cut(s)	1807
BfuAI	ACCTGC	1 cut(s)	1172
BfuI	GTATCC	1 cut(s)	1043
BisI	GCNGC	2 cut(s)	69, 110
BlpI	GCTNAGC	2 cut(s)	343, 921
BlsI	GCNGC	2 cut(s)	70, 111
Bme1390I	CCNGG	6 cut(s)	586, 738, 870, 960, 1149, 1597
Bme18I	GGWCC	4 cut(s)	704, 766, 1066, 1152
BmgT120I	GGNCC	4 cut(s)	704, 766, 1066, 1152
BmiI	GGNNCC	6 cut(s)	330, 823, 1067, 1153, 1159, 1682
BmrFI	CCNGG	6 cut(s)	586, 738, 870, 960, 1149, 1597
BmrI	ACTGGG	1 cut(s)	1658
BmsI	GCATC	3 cut(s)	1106, 1168, 1361
BmtI	GCTAGC	1 cut(s)	1205
BmuI	ACTGGG	1 cut(s)	1658
BpmI	CTGGAG	5 cut(s)	270, 301, 648, 853, 1327
Bpu10I	CCTNAGC	1 cut(s)	1855
Bpu1102I	GCTNAGC	2 cut(s)	343, 921
BpuEI	CTTGAG	2 cut(s)	537, 1783
BpuMI	CCSGG	3 cut(s)	870, 960, 1597
BsaJI	CCNNGG	3 cut(s)	117, 1148, 1376
BsaWI	WCCGGW	1 cut(s)	1154
BsaXI	ACNNNNNCTCC	2 cut(s)	646, 676
Bsc4I	CCNNNNNNNGG	4 cut(s)	487, 831, 869, 1154
Bse1I	ACTGG	6 cut(s)	48, 378, 403, 1069, 1310, 1664
Bse3DI	GCAATG	4 cut(s)	569, 1092, 1389, 1506
BseBI	CCWGG	3 cut(s)	586, 738, 1149
BseDI	CCNNGG	3 cut(s)	117, 1148, 1376
BseGI	GGATG	4 cut(s)	574, 744, 1444, 1819
BseLI	CCNNNNNNNGG	4 cut(s)	487, 831, 869, 1154
BseMI	GCAATG	4 cut(s)	569, 1092, 1389, 1506
BseMII	CTCAG	6 cut(s)	201, 357, 477, 912, 1197, 1311
BseNI	ACTGG	6 cut(s)	48, 378, 403, 1069, 1310, 1664
BseRI	GAGGAG	2 cut(s)	1647, 1650
BseXI	GCAGC	1 cut(s)	80
BsgI	GTGCAG	2 cut(s)	165, 1688
Bsh1236I	CGCG	2 cut(s)	732, 927
BshFI	GGCC	2 cut(s)	775, 1521
BsiSI	CCGG	4 cut(s)	870, 959, 1155, 1596
BslFI	GGGAC	5 cut(s)	7, 1079, 1165, 1612, 1817
BslI	CCNNNNNNNGG	4 cut(s)	487, 831, 869, 1154
BsmAI	GTCTC	3 cut(s)	900, 1023, 1202
BsmFI	GGGAC	5 cut(s)	7, 1079, 1165, 1612, 1817
BsnI	GGCC	2 cut(s)	775, 1521
Bsp1286I	GDGCHC	2 cut(s)	11, 1092
Bsp1407I	TGTACA	1 cut(s)	786
Bsp143I	GATC	8 cut(s)	351, 426, 659, 733, 979, 987, 1157, 1693
Bsp1720I	GCTNAGC	2 cut(s)	343, 921
BspACI	CCGC	2 cut(s)	110, 468
BspANI	GGCC	2 cut(s)	775, 1521
BspCNI	CTCAG	6 cut(s)	202, 356, 476, 913, 1198, 1312
BspFNI	CGCG	2 cut(s)	732, 927
BspHI	TCATGA	2 cut(s)	1132, 1696
BspLI	GGNNCC	6 cut(s)	330, 823, 1067, 1153, 1159, 1682
BspMI	ACCTGC	1 cut(s)	1172
BspOI	GCTAGC	1 cut(s)	1205
BspPI	GGATC	3 cut(s)	728, 1152, 1165
BspQI	GCTCTTC	2 cut(s)	1446, 1754
BsrDI	GCAATG	4 cut(s)	569, 1092, 1389, 1506
BsrGI	TGTACA	1 cut(s)	786
BsrI	ACTGG	6 cut(s)	48, 378, 403, 1069, 1310, 1664
BssECI	CCNNGG	3 cut(s)	117, 1148, 1376
BssMI	GATC	8 cut(s)	351, 426, 659, 733, 979, 987, 1157, 1693
BssSI	CACGAG	1 cut(s)	687
BssT1I	CCWWGG	2 cut(s)	117, 1376
Bst2BI	CACGAG	1 cut(s)	687
Bst2UI	CCWGG	3 cut(s)	586, 738, 1149
Bst4CI	ACNGT	8 cut(s)	223, 580, 721, 947, 1062, 1105, 1603, 1838
Bst6I	CTCTTC	2 cut(s)	1446, 1754
BstAUI	TGTACA	1 cut(s)	786
BstC8I	GCNNGC	7 cut(s)	90, 94, 470, 1203, 1475, 1825, 1829
BstDEI	CTNAG	9 cut(s)	210, 343, 463, 921, 997, 1206, 1242, 1320, 1855
BstF5I	GGATG	4 cut(s)	574, 744, 1444, 1819
BstFNI	CGCG	2 cut(s)	732, 927
BstHHI	GCGC	2 cut(s)	732, 927
BstKTI	GATC	8 cut(s)	354, 429, 662, 736, 982, 990, 1160, 1696
BstMAI	GTCTC	3 cut(s)	900, 1023, 1202
BstMBI	GATC	8 cut(s)	351, 426, 659, 733, 979, 987, 1157, 1693
BstMWI	GCNNNNNNNGC	1 cut(s)	1372
BstNI	CCWGG	3 cut(s)	586, 738, 1149
BstNSI	RCATGY	6 cut(s)	92, 364, 700, 1273, 1477, 1827
BstSCI	CCNGG	6 cut(s)	584, 736, 868, 958, 1147, 1595
BstSFI	CTRYAG	1 cut(s)	1807
BstUI	CGCG	2 cut(s)	732, 927
BstV1I	GCAGC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	1157
BstYI	RGATCY	1 cut(s)	1157
BsuI	GTATCC	1 cut(s)	1043
BsuRI	GGCC	2 cut(s)	775, 1521
BtgZI	GCGATG	1 cut(s)	942
BtsCI	GGATG	4 cut(s)	574, 744, 1444, 1819
BtsI	GCAGTG	1 cut(s)	1771
BtsIMutI	CAGTG	6 cut(s)	385, 975, 1067, 1293, 1671, 1771
BveI	ACCTGC	1 cut(s)	1172
Cac8I	GCNNGC	7 cut(s)	90, 94, 470, 1203, 1475, 1825, 1829
CciI	TCATGA	2 cut(s)	1132, 1696
CfoI	GCGC	2 cut(s)	732, 927
Cfr13I	GGNCC	4 cut(s)	704, 766, 1066, 1152
Csp6I	GTAC	8 cut(s)	358, 617, 787, 1106, 1252, 1327, 1495, 1753
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviQI	GTAC	8 cut(s)	358, 617, 787, 1106, 1252, 1327, 1495, 1753
DdeI	CTNAG	9 cut(s)	210, 343, 463, 921, 997, 1206, 1242, 1320, 1855
DpnI	GATC	8 cut(s)	353, 428, 661, 735, 981, 989, 1159, 1695
DpnII	GATC	8 cut(s)	351, 426, 659, 733, 979, 987, 1157, 1693
EaeI	YGGCCR	2 cut(s)	773, 1519
Eam1104I	CTCTTC	2 cut(s)	1446, 1754
EarI	CTCTTC	2 cut(s)	1446, 1754
Eco130I	CCWWGG	2 cut(s)	117, 1376
Eco24I	GRGCYC	2 cut(s)	11, 1092
Eco47I	GGWCC	4 cut(s)	704, 766, 1066, 1152
Eco57I	CTGAAG	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	766
EcoRII	CCWGG	3 cut(s)	584, 736, 1147
EcoT14I	CCWWGG	2 cut(s)	117, 1376
EcoT38I	GRGCYC	2 cut(s)	11, 1092
ErhI	CCWWGG	2 cut(s)	117, 1376
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	5 cut(s)	7, 1079, 1165, 1612, 1817
FauI	CCCGC	1 cut(s)	461
FauNDI	CATATG	1 cut(s)	338
FbaI	TGATCA	3 cut(s)	426, 979, 987
FblI	GTMKAC	1 cut(s)	1503
Fnu4HI	GCNGC	2 cut(s)	69, 110
FokI	GGATG	4 cut(s)	581, 731, 1451, 1826
FriOI	GRGCYC	2 cut(s)	11, 1092
Fsp4HI	GCNGC	2 cut(s)	69, 110
FspBI	CTAG	3 cut(s)	501, 753, 1202
GlaI	GCGC	2 cut(s)	731, 926
GluI	GCNGC	2 cut(s)	69, 110
GsuI	CTGGAG	5 cut(s)	270, 301, 648, 853, 1327
HaeIII	GGCC	2 cut(s)	775, 1521
HapII	CCGG	4 cut(s)	870, 959, 1155, 1596
HhaI	GCGC	2 cut(s)	732, 927
Hin6I	GCGC	2 cut(s)	730, 925
HinP1I	GCGC	2 cut(s)	730, 925
HincII	GTYRAC	1 cut(s)	1360
HindII	GTYRAC	1 cut(s)	1360
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	8 cut(s)	206, 290, 314, 374, 520, 878, 1561, 1784
HpaII	CCGG	4 cut(s)	870, 959, 1155, 1596
HphI	GGTGA	2 cut(s)	852, 1199
Hpy166II	GTNNAC	7 cut(s)	707, 789, 965, 1074, 1360, 1504, 1573
Hpy188I	TCNGA	6 cut(s)	39, 211, 351, 525, 1420, 1654
Hpy188III	TCNNGA	7 cut(s)	249, 318, 517, 832, 875, 1133, 1697
Hpy8I	GTNNAC	7 cut(s)	707, 789, 965, 1074, 1360, 1504, 1573
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	7 cut(s)	190, 255, 434, 1171, 1307, 1694, 1798
HpyCH4III	ACNGT	8 cut(s)	223, 580, 721, 947, 1062, 1105, 1603, 1838
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1372
HpyF3I	CTNAG	9 cut(s)	210, 343, 463, 921, 997, 1206, 1242, 1320, 1855
HspAI	GCGC	2 cut(s)	730, 925
Ksp22I	TGATCA	3 cut(s)	426, 979, 987
Kzo9I	GATC	8 cut(s)	351, 426, 659, 733, 979, 987, 1157, 1693
LguI	GCTCTTC	2 cut(s)	1446, 1754
LmnI	GCTCC	4 cut(s)	334, 352, 834, 1680
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	3 cut(s)	1106, 1168, 1361
MaeI	CTAG	3 cut(s)	501, 753, 1202
MaeIII	GTNAC	4 cut(s)	77, 217, 580, 1643
MalI	GATC	8 cut(s)	353, 428, 661, 735, 981, 989, 1159, 1695
MboI	GATC	8 cut(s)	351, 426, 659, 733, 979, 987, 1157, 1693
MboII	GAAGA	3 cut(s)	215, 1463, 1771
MflI	RGATCY	1 cut(s)	1157
MhlI	GDGCHC	2 cut(s)	11, 1092
MlsI	TGGCCA	2 cut(s)	775, 1521
MluCI	AATT	6 cut(s)	283, 485, 778, 949, 1331, 1655
MluNI	TGGCCA	2 cut(s)	775, 1521
MlyI	GAGTC	3 cut(s)	284, 308, 872
MmeI	TCCRAC	3 cut(s)	1416, 1443, 1609
MnlI	CCTC	8 cut(s)	176, 552, 640, 1302, 1426, 1625, 1628, 1631
Mox20I	TGGCCA	2 cut(s)	775, 1521
MscI	TGGCCA	2 cut(s)	775, 1521
MseI	TTAA	2 cut(s)	761, 1728
MslI	CAYNNNNRTG	4 cut(s)	156, 337, 1281, 1533
Msp20I	TGGCCA	2 cut(s)	775, 1521
MspI	CCGG	4 cut(s)	870, 959, 1155, 1596
MspR9I	CCNGG	6 cut(s)	586, 738, 870, 960, 1149, 1597
MvaI	CCWGG	3 cut(s)	586, 738, 1149
MvnI	CGCG	2 cut(s)	732, 927
MwoI	GCNNNNNNNGC	1 cut(s)	1372
NciI	CCSGG	3 cut(s)	870, 960, 1597
NdeI	CATATG	1 cut(s)	338
NdeII	GATC	8 cut(s)	351, 426, 659, 733, 979, 987, 1157, 1693
NheI	GCTAGC	1 cut(s)	1201
NlaIV	GGNNCC	6 cut(s)	330, 823, 1067, 1153, 1159, 1682
NmeAIII	GCCGAG	1 cut(s)	1255
NmuCI	GTSAC	2 cut(s)	77, 1643
NspI	RCATGY	6 cut(s)	92, 364, 700, 1273, 1477, 1827
OliI	CACNNNNGTG	1 cut(s)	1281
PaeI	GCATGC	3 cut(s)	92, 1477, 1827
PagI	TCATGA	2 cut(s)	1132, 1696
PaqCI	CACCTGC	1 cut(s)	1172
PciI	ACATGT	1 cut(s)	360
PciSI	GCTCTTC	2 cut(s)	1446, 1754
PfeI	GAWTC	5 cut(s)	206, 374, 520, 1561, 1784
PfoI	TCCNGGA	1 cut(s)	1595
PkrI	GCNGC	2 cut(s)	70, 111
PleI	GAGTC	3 cut(s)	284, 308, 872
PpsI	GAGTC	3 cut(s)	284, 308, 872
PpuMI	RGGWCCY	1 cut(s)	766
PscI	ACATGT	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	766
Psp6I	CCWGG	3 cut(s)	584, 736, 1147
PspGI	CCWGG	3 cut(s)	584, 736, 1147
PspN4I	GGNNCC	6 cut(s)	330, 823, 1067, 1153, 1159, 1682
PspPI	GGNCC	4 cut(s)	704, 766, 1066, 1152
PspPPI	RGGWCCY	1 cut(s)	766
PsuI	RGATCY	1 cut(s)	1157
RsaI	GTAC	8 cut(s)	359, 618, 788, 1107, 1253, 1328, 1496, 1754
RsaNI	GTAC	8 cut(s)	358, 617, 787, 1106, 1252, 1327, 1495, 1753
RseI	CAYNNNNRTG	4 cut(s)	156, 337, 1281, 1533
SapI	GCTCTTC	2 cut(s)	1446, 1754
SaqAI	TTAA	2 cut(s)	761, 1728
SatI	GCNGC	2 cut(s)	69, 110
Sau3AI	GATC	8 cut(s)	351, 426, 659, 733, 979, 987, 1157, 1693
Sau96I	GGNCC	4 cut(s)	704, 766, 1066, 1152
SchI	GAGTC	3 cut(s)	284, 308, 872
ScrFI	CCNGG	6 cut(s)	586, 738, 870, 960, 1149, 1597
SduI	GDGCHC	2 cut(s)	11, 1092
SfaNI	GCATC	3 cut(s)	1106, 1168, 1361
SfcI	CTRYAG	1 cut(s)	1807
SinI	GGWCC	4 cut(s)	704, 766, 1066, 1152
SmiMI	CAYNNNNRTG	4 cut(s)	156, 337, 1281, 1533
SmlI	CTYRAG	3 cut(s)	10, 552, 1798
SmoI	CTYRAG	3 cut(s)	10, 552, 1798
SpeI	ACTAGT	1 cut(s)	752
SphI	GCATGC	3 cut(s)	92, 1477, 1827
Sse9I	AATT	6 cut(s)	283, 485, 778, 949, 1331, 1655
SsiI	CCGC	2 cut(s)	110, 468
SspMI	CTAG	3 cut(s)	501, 753, 1202
StyD4I	CCNGG	6 cut(s)	584, 736, 868, 958, 1147, 1595
StyI	CCWWGG	2 cut(s)	117, 1376
TaaI	ACNGT	8 cut(s)	223, 580, 721, 947, 1062, 1105, 1603, 1838
TaqI	TCGA	4 cut(s)	288, 296, 715, 1100
TaqII	GACCGA	1 cut(s)	791
TasI	AATT	6 cut(s)	283, 485, 778, 949, 1331, 1655
TatI	WGTACW	5 cut(s)	357, 786, 1326, 1494, 1752
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	5 cut(s)	206, 374, 520, 1561, 1784
Tru1I	TTAA	2 cut(s)	761, 1728
Tru9I	TTAA	2 cut(s)	761, 1728
TscAI	CASTG	6 cut(s)	385, 982, 1067, 1300, 1671, 1771
TseFI	GTSAC	2 cut(s)	77, 1643
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	2 cut(s)	77, 1643
TspRI	CASTG	6 cut(s)	385, 982, 1067, 1300, 1671, 1771
VpaK11BI	GGWCC	4 cut(s)	704, 766, 1066, 1152
XapI	RAATTY	4 cut(s)	283, 778, 1331, 1655
XceI	RCATGY	6 cut(s)	92, 364, 700, 1273, 1477, 1827
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1625
XmiI	GTMKAC	1 cut(s)	1503
XspI	CTAG	3 cut(s)	501, 753, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.