Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Forward (+)

23653765 .. 23656589

Gene Structure 2825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG202100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAGTAACAGTGGCTACCTGGGCAGCTCTGAGCCTTGTTTTTGTTAGCATAATAGCAAGATGGGTGTGGGGTGTGCTGGATTGGTTGTGGTTTAAGCCAAAGAAGCTAGAAAGATCGCTGAGAGAGCAAGGCCTTAAAGGAAACTCCTACAGGTTTATGTATGGAGACTTGAAGGAGAACGCTAACCTGCTCGAACAAGCATCATCCAAACCCATGAACCTCTCAACCTCCCACGACATAGTACCACGAGTCACCCCTTTCGACGATCAAGCCCTGAAAACTTATGGTAAGGACTCTTTTGTTTGGATTGGCACTTCACCAATGCGTATGTTTCCGGCATTCCACGAAAGTTGTGATGATATGATTAAGGAATGGGAGAGCTCAGTGTCCAAAAGGGATTCATCTAAAGGCCATGGATATCCTTTGTTCACCACCTCCAAAGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

150

Amino Acids

17.13

Weight (kDa)

8.67

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	3 cut(s)	29, 109, 384
AluI	AGCT	3 cut(s)	29, 109, 384
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	162
AoxI	GGCC	2 cut(s)	133, 412
ApeKI	GCWGC	1 cut(s)	26
AsuHPI	GGTGA	3 cut(s)	247, 312, 424
BanII	GRGCYC	1 cut(s)	386
BauI	CACGAG	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	21, 415
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	21, 415
BseGI	GGATG	1 cut(s)	206
BseMII	CTCAG	3 cut(s)	23, 113, 399
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	135, 414
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	135, 414
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	116, 268
Bsp19I	CCATGG	1 cut(s)	415
BspANI	GGCC	2 cut(s)	135, 414
BspCNI	CTCAG	3 cut(s)	24, 114, 398
BspMI	ACCTGC	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	21, 415
BssMI	GATC	2 cut(s)	116, 268
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	415
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	13
BstDEI	CTNAG	3 cut(s)	32, 122, 385
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	206
BstKTI	GATC	2 cut(s)	119, 271
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	2 cut(s)	116, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 106, 127
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	135, 414
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	18, 393
BveI	ACCTGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	245
CspCI	CAANNNNNGTGG	2 cut(s)	335, 370
CviAII	CATG	2 cut(s)	217, 416
CviJI	RGCY	9 cut(s)	17, 29, 36, 100, 109, 135, 275, 384, 414
CviKI_1	RGCY	9 cut(s)	17, 29, 36, 100, 109, 135, 275, 384, 414
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	3 cut(s)	32, 122, 385
DpnI	GATC	2 cut(s)	118, 270
DpnII	GATC	2 cut(s)	116, 268
Ecl136II	GAGCTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	415
Eco147I	AGGCCT	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	20
EcoRV	GATATC	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	2 cut(s)	220, 419
FaiI	YATR	9 cut(s)	53, 161, 165, 218, 242, 288, 332, 365, 417
FatI	CATG	2 cut(s)	216, 415
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	193
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	135, 414
HapII	CCGG	1 cut(s)	338
Hin1II	CATG	2 cut(s)	220, 419
HinfI	GANTC	3 cut(s)	252, 296, 401
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	3 cut(s)	247, 312, 424
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	33
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 106, 127
HpyF3I	CTNAG	3 cut(s)	32, 122, 385
Hsp92II	CATG	2 cut(s)	220, 419
Kzo9I	GATC	2 cut(s)	116, 268
LpnPI	CCDG	7 cut(s)	7, 34, 65, 139, 203, 290, 351
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	7, 253
MalI	GATC	2 cut(s)	118, 270
MboI	GATC	2 cut(s)	116, 268
MhlI	GDGCHC	1 cut(s)	386
MlyI	GAGTC	2 cut(s)	261, 290
MnlI	CCTC	3 cut(s)	233, 241, 448
MseI	TTAA	4 cut(s)	96, 138, 369, 451
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	3 cut(s)	23, 106, 127
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	116, 268
NlaIII	CATG	2 cut(s)	220, 419
NmuCI	GTSAC	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	135
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	2 cut(s)	260, 290
PpsI	GAGTC	2 cut(s)	260, 290
Psp124BI	GAGCTC	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	386
SaqAI	TTAA	4 cut(s)	96, 138, 369, 451
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	116, 268
SchI	GAGTC	2 cut(s)	261, 290
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	386
SfaNI	GCATC	1 cut(s)	212
SfcI	CTRYAG	1 cut(s)	151
SseBI	AGGCCT	1 cut(s)	135
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	386
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	195, 264
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	4 cut(s)	96, 138, 369, 451
Tru9I	TTAA	4 cut(s)	96, 138, 369, 451
TscAI	CASTG	2 cut(s)	18, 393
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	233, 393
TspRI	CASTG	2 cut(s)	18, 393
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.