Rh2AG092500

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000133
Physical Location & Seq
Forward (+)
7774061 .. 7775456
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG092500.1

Sequence Viewer

Length: 762 bp
ATGAAAGAGTTTGTGAGGCAGATAAAGGACGCATGGTCCAAGCCAATGAGTCTAAATCACCAGATTGTTCCACGTGTCGACCCGTTTACCCTAGATACTGTGCAGAAATATGGGAAGATATCGATGTGTTGGGTTGGGACTACACCAAGACTGATCATCATGGACACTGAGATAGTGAAAGAAGTTCTGTCTAACAAGCTAGGTCACTTCCATAAGCCACCCCTAAACCCTCAAATTCTGATTCTAACAAAGGGTCTGTCAACTCTACATGGTGAGAAATGGGCCAAACACAGAAGGATAATCAATCCTGCTTTCCACCTAGAAAAGCTGAAGGATATGATACCTGTATTTGCAGTCAGCTGCGGTGAAATGATAGAACAGTGGAAGAGGGAGAATCCTTTTCTTCAAGGAAGTTGTGAAATGGATATCTGGCCTGAACTTCAGAAACTAACTGCAGATGTTATTTCTAGAGCAGCATTTGGAAGCACCTATGAAGAAGGGAGGAAGGTCTTCGAGCTTCAAAGAGAGCTCTTAACGTTAACCGTTGAAGCAATGCAAACCTTATATATCCCGGGTTTCAGATTTATTCCAACAAAGAAGAATCAGAGGAGAAAAAAATTGCACAATGAGATCACATTGATGCTACGAAATATTATCCAGAACAAAATGAATGCCATAAGAGCCGGAGAATCAAGTGTTGATGAATTGCTAGGCCTGCTGTTGCACTCTAAGCCACCTCAAGATCGTAACCATGATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00908 ko01100 ko01110 map00908 map01100 map01110
Pfam Domains
Protein Families
p450

Protein Analysis

253

Amino Acids

29.33

Weight (kDa)

9.47

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 34 - 251 1.2e-25 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AciI CCGC 1 cut(s) 363
AclI AACGTT 1 cut(s) 536
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 2 cut(s) 350, 425
AcvI CACGTG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 3 cut(s) 407, 521, 548
AhdI GACNNNNNGTC 1 cut(s) 34
AluBI AGCT 5 cut(s) 199, 328, 360, 517, 529
AluI AGCT 5 cut(s) 199, 328, 360, 517, 529
Alw21I GWGCWC 1 cut(s) 531
Ama87I CYCGRG 1 cut(s) 571
AoxI GGCC 3 cut(s) 282, 431, 712
ApeKI GCWGC 2 cut(s) 360, 473
ApoI RAATTY 1 cut(s) 234
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
Asp700I GAANNNNTTC 1 cut(s) 509
AspS9I GGNCC 2 cut(s) 36, 282
AsuC2I CCSGG 2 cut(s) 572, 573
AsuHPI GGTGA 3 cut(s) 50, 284, 377
AvaI CYCGRG 1 cut(s) 571
AvaII GGWCC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 531
BbrPI CACGTG 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 502
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 2 cut(s) 347, 485
BclI TGATCA 1 cut(s) 153
BcnI CCSGG 2 cut(s) 572, 573
BfaI CTAG 5 cut(s) 92, 200, 320, 468, 710
BfmI CTRYAG 1 cut(s) 453
BisI GCNGC 2 cut(s) 361, 474
BlsI GCNGC 2 cut(s) 362, 475
Bme1390I CCNGG 2 cut(s) 572, 573
Bme18I GGWCC 1 cut(s) 36
BmeRI GACNNNNNGTC 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 571
BmgT120I GGNCC 2 cut(s) 36, 282
BmrFI CCNGG 2 cut(s) 572, 573
BmsI GCATC 1 cut(s) 630
BpiI GAAGAC 1 cut(s) 502
BpuEI CTTGAG 1 cut(s) 723
BpuMI CCSGG 2 cut(s) 572, 573
Bsa29I ATCGAT 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 571
Bse3DI GCAATG 1 cut(s) 558
BseCI ATCGAT 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 571
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 622
BseXI GCAGC 2 cut(s) 347, 485
BsgI GTGCAG 1 cut(s) 122
BshFI GGCC 3 cut(s) 284, 433, 714
BshVI ATCGAT 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 571
BsiSI CCGG 2 cut(s) 572, 684
BslFI GGGAC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 3 cut(s) 284, 433, 714
BsoBI CYCGRG 1 cut(s) 571
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 3 cut(s) 153, 630, 742
BspACI CCGC 1 cut(s) 363
BspANI GGCC 3 cut(s) 284, 433, 714
BspCNI CTCAG 1 cut(s) 160
BspDI ATCGAT 1 cut(s) 122
BspMAI CTGCAG 1 cut(s) 457
BsrDI GCAATG 1 cut(s) 558
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 3 cut(s) 153, 630, 742
Bst4CI ACNGT 3 cut(s) 100, 381, 544
Bst6I CTCTTC 1 cut(s) 380
BstBAI YACGTR 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 716
BstDEI CTNAG 2 cut(s) 168, 729
BstKTI GATC 3 cut(s) 156, 633, 745
BstMBI GATC 3 cut(s) 153, 630, 742
BstMWI GCNNNNNNNGC 3 cut(s) 680, 715, 730
BstSCI CCNGG 2 cut(s) 570, 571
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 2 cut(s) 347, 485
BstV2I GAAGAC 1 cut(s) 502
Bsu15I ATCGAT 1 cut(s) 122
BsuRI GGCC 3 cut(s) 284, 433, 714
BsuTUI ATCGAT 1 cut(s) 122
BtsIMutI CAGTG 2 cut(s) 165, 386
Cac8I GCNNGC 1 cut(s) 716
Cfr13I GGNCC 2 cut(s) 36, 282
Cfr9I CCCGGG 1 cut(s) 571
ClaI ATCGAT 1 cut(s) 122
CseI GACGC 1 cut(s) 38
CviAII CATG 4 cut(s) 33, 160, 269, 752
DdeI CTNAG 2 cut(s) 168, 729
DpnI GATC 3 cut(s) 155, 632, 744
DpnII GATC 3 cut(s) 153, 630, 742
DriI GACNNNNNGTC 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 380
Eam1105I GACNNNNNGTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 380
Ecl136II GAGCTC 1 cut(s) 529
Eco147I AGGCCT 1 cut(s) 714
Eco24I GRGCYC 1 cut(s) 531
Eco32I GATATC 2 cut(s) 120, 427
Eco47I GGWCC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 529
Eco57I CTGAAG 2 cut(s) 350, 425
Eco72I CACGTG 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 571
EcoICRI GAGCTC 1 cut(s) 529
EcoRV GATATC 2 cut(s) 120, 427
EcoT38I GRGCYC 1 cut(s) 531
FaeI CATG 4 cut(s) 36, 163, 272, 755
FaqI GGGAC 1 cut(s) 151
FatI CATG 4 cut(s) 32, 159, 268, 751
FbaI TGATCA 1 cut(s) 153
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 361, 474
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 2 cut(s) 361, 474
FspBI CTAG 5 cut(s) 92, 200, 320, 468, 710
GluI GCNGC 2 cut(s) 361, 474
HaeIII GGCC 3 cut(s) 284, 433, 714
HapII CCGG 2 cut(s) 572, 684
HgaI GACGC 1 cut(s) 38
Hin1II CATG 4 cut(s) 36, 163, 272, 755
HincII GTYRAC 3 cut(s) 79, 261, 540
HindII GTYRAC 3 cut(s) 79, 261, 540
HinfI GANTC 5 cut(s) 49, 241, 394, 601, 689
HpaI GTTAAC 1 cut(s) 540
HpaII CCGG 2 cut(s) 572, 684
HphI GGTGA 3 cut(s) 50, 284, 377
Hpy166II GTNNAC 4 cut(s) 79, 87, 261, 540
Hpy188I TCNGA 4 cut(s) 240, 444, 581, 606
Hpy188III TCNNGA 3 cut(s) 468, 658, 740
Hpy8I GTNNAC 4 cut(s) 79, 87, 261, 540
HpyAV CCTTC 4 cut(s) 288, 325, 491, 499
HpyCH4III ACNGT 3 cut(s) 100, 381, 544
HpyCH4IV ACGT 2 cut(s) 73, 536
HpyCH4V TGCA 6 cut(s) 103, 353, 455, 556, 622, 724
HpyF10VI GCNNNNNNNGC 3 cut(s) 680, 715, 730
HpyF3I CTNAG 2 cut(s) 168, 729
HpySE526I ACGT 2 cut(s) 73, 536
Hsp92II CATG 4 cut(s) 36, 163, 272, 755
Ksp22I TGATCA 1 cut(s) 153
KspAI GTTAAC 1 cut(s) 540
Kzo9I GATC 3 cut(s) 153, 630, 742
LpnPI CCDG 9 cut(s) 74, 321, 357, 415, 447, 585, 671, 697, 728
Lsp1109I GCAGC 2 cut(s) 347, 485
LweI GCATC 1 cut(s) 630
MaeI CTAG 5 cut(s) 92, 200, 320, 468, 710
MaeII ACGT 2 cut(s) 73, 536
MaeIII GTNAC 2 cut(s) 203, 746
MalI GATC 3 cut(s) 155, 632, 744
MboI GATC 3 cut(s) 153, 630, 742
MboII GAAGA 6 cut(s) 127, 395, 397, 502, 506, 610
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 3 cut(s) 234, 617, 704
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 614
MnlI CCTC 6 cut(s) 9, 240, 381, 495, 600, 747
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 3 cut(s) 533, 539, 760
MslI CAYNNNNRTG 1 cut(s) 638
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 2 cut(s) 572, 684
MspR9I CCNGG 2 cut(s) 572, 573
Mva1269I GAATGC 1 cut(s) 676
MwoI GCNNNNNNNGC 3 cut(s) 680, 715, 730
NciI CCSGG 2 cut(s) 572, 573
NdeII GATC 3 cut(s) 153, 630, 742
NlaIII CATG 4 cut(s) 36, 163, 272, 755
NmuCI GTSAC 1 cut(s) 203
PceI AGGCCT 1 cut(s) 714
PctI GAATGC 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 4 cut(s) 241, 394, 601, 689
PkrI GCNGC 2 cut(s) 362, 475
PleI GAGTC 1 cut(s) 57
PmaCI CACGTG 1 cut(s) 74
PmlI CACGTG 1 cut(s) 74
PpsI GAGTC 1 cut(s) 57
Ppu21I YACGTR 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 531
Psp1406I AACGTT 1 cut(s) 536
PspCI CACGTG 1 cut(s) 74
PspPI GGNCC 2 cut(s) 36, 282
PstI CTGCAG 1 cut(s) 457
PvuII CAGCTG 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 638
SacI GAGCTC 1 cut(s) 531
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 533, 539, 760
SatI GCNGC 2 cut(s) 361, 474
Sau3AI GATC 3 cut(s) 153, 630, 742
Sau96I GGNCC 2 cut(s) 36, 282
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 572, 573
SduI GDGCHC 1 cut(s) 531
SfaNI GCATC 1 cut(s) 630
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 1 cut(s) 36
SmaI CCCGGG 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 738
SmoI CTYRAG 1 cut(s) 738
Sse9I AATT 3 cut(s) 234, 617, 704
SseBI AGGCCT 1 cut(s) 714
SsiI CCGC 1 cut(s) 363
SspI AATATT 1 cut(s) 652
SspMI CTAG 5 cut(s) 92, 200, 320, 468, 710
SstI GAGCTC 1 cut(s) 531
StuI AGGCCT 1 cut(s) 714
StyD4I CCNGG 2 cut(s) 570, 571
TaaI ACNGT 3 cut(s) 100, 381, 544
TaiI ACGT 2 cut(s) 76, 539
TaqI TCGA 3 cut(s) 78, 122, 513
TasI AATT 3 cut(s) 234, 617, 704
TfiI GAWTC 4 cut(s) 241, 394, 601, 689
Tru1I TTAA 3 cut(s) 533, 539, 760
Tru9I TTAA 3 cut(s) 533, 539, 760
TscAI CASTG 2 cut(s) 172, 386
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 2 cut(s) 360, 473
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 4 cut(s) 17, 507, 683, 717
TspMI CCCGGG 1 cut(s) 571
TspRI CASTG 2 cut(s) 172, 386
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 1 cut(s) 234
XbaI TCTAGA 1 cut(s) 467
XmaI CCCGGG 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 5 cut(s) 92, 200, 320, 468, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.