Rorug05G0109800

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
9777633 .. 9778037
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0109800.1

Sequence Viewer

Length: 405 bp
ATGCAGGTTGCAAAGATGATCAGCAGCGACGCGGCAGCGACAGCAGAAGCGGAAGCGAGTCGTCACGGTATGATGAGCCGGCCCTACGAGATGGTGAGGCAGCTAGGGTCATGCAACGCGGTGGTTGTGTTCAGCGCGAGCGGCTGCCCAATGTGCACCGTGGCCGAGCGCCTCCTCTTCAGCCTCGGAGTTGGCCCCACCATCGTGGAGCTGGACCGCCACGTGGAGGGGCCGGACATAAGGGAGGTGCTCCGAGAGCTGGCGGATGGGCAGGGGCAGCAGCAGCCGGTTCCGGCGGTGTTCATTGGAGGGAAGTTCTTGGGCGGCGTGGAGGCGCTGATGGCTTGCCACATCAACGGCAACCTCGTCCCTCTTCTCAAGCACTCCGGCGCTCTCTGGCTCTGA

Protein Analysis

134

Amino Acids

14.22

Weight (kDa)

5.74

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 41 - 106 3e-12 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 141
AccII CGCG 3 cut(s) 32, 119, 137
AciI CCGC 8 cut(s) 32, 50, 119, 141, 217, 263, 296, 324
AcoI YGGCCR 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 163
AcvI CACGTG 1 cut(s) 223
AfiI CCNNNNNNNGG 3 cut(s) 223, 226, 259
AleI CACNNNNGTG 1 cut(s) 203
AluBI AGCT 3 cut(s) 103, 211, 259
AluI AGCT 3 cut(s) 103, 211, 259
Alw21I GWGCWC 2 cut(s) 158, 252
Alw44I GTGCAC 1 cut(s) 154
AoxI GGCC 4 cut(s) 80, 162, 193, 230
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 7 cut(s) 24, 35, 100, 144, 277, 280, 283
AspLEI GCGC 4 cut(s) 137, 171, 337, 392
AspS9I GGNCC 4 cut(s) 81, 194, 214, 230
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 158
BbrPI CACGTG 1 cut(s) 223
Bbv12I GWGCWC 2 cut(s) 158, 252
BbvI GCAGC 7 cut(s) 36, 47, 112, 131, 289, 292, 295
BccI CCATC 4 cut(s) 85, 209, 260, 334
BceAI ACGGC 1 cut(s) 373
BclI TGATCA 1 cut(s) 18
BfaI CTAG 1 cut(s) 104
BfoI RGCGCY 3 cut(s) 172, 338, 393
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 4 cut(s) 81, 194, 214, 230
BmiI GGNNCC 3 cut(s) 196, 231, 291
BpuEI CTTGAG 1 cut(s) 362
BsaAI YACGTR 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 159, 184
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 226, 259
Bse118I RCCGGY 2 cut(s) 78, 286
BseDI CCNNGG 2 cut(s) 159, 184
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 3 cut(s) 223, 226, 259
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 7 cut(s) 36, 47, 112, 131, 289, 292, 295
Bsh1236I CGCG 3 cut(s) 32, 119, 137
BshFI GGCC 4 cut(s) 82, 164, 195, 232
BsiHKAI GWGCWC 2 cut(s) 158, 252
BsiSI CCGG 5 cut(s) 79, 233, 287, 293, 387
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 3 cut(s) 223, 226, 259
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 4 cut(s) 82, 164, 195, 232
Bsp1286I GDGCHC 2 cut(s) 158, 252
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 8 cut(s) 32, 50, 119, 141, 217, 263, 296, 324
BspANI GGCC 4 cut(s) 82, 164, 195, 232
BspFNI CGCG 3 cut(s) 32, 119, 137
BspLI GGNNCC 3 cut(s) 196, 231, 291
BsrBI CCGCTC 1 cut(s) 141
BsrFI RCCGGY 2 cut(s) 78, 286
BssAI RCCGGY 2 cut(s) 78, 286
BssECI CCNNGG 2 cut(s) 159, 184
BssMI GATC 1 cut(s) 18
Bst4CI ACNGT 2 cut(s) 68, 160
Bst6I CTCTTC 2 cut(s) 182, 378
BstBAI YACGTR 1 cut(s) 223
BstC8I GCNNGC 4 cut(s) 80, 139, 261, 346
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 3 cut(s) 32, 119, 137
BstH2I RGCGCY 3 cut(s) 172, 338, 393
BstHHI GCGC 4 cut(s) 137, 171, 337, 392
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 7 cut(s) 41, 141, 153, 256, 277, 283, 341
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 3 cut(s) 32, 119, 137
BstV1I GCAGC 7 cut(s) 36, 47, 112, 131, 289, 292, 295
BstXI CCANNNNNNTGG 1 cut(s) 205
BsuRI GGCC 4 cut(s) 82, 164, 195, 232
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 4 cut(s) 80, 139, 261, 346
CfoI GCGC 4 cut(s) 137, 171, 337, 392
Cfr10I RCCGGY 2 cut(s) 78, 286
Cfr13I GGNCC 4 cut(s) 81, 194, 214, 230
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 111
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 182, 378
EarI CTCTTC 2 cut(s) 182, 378
EciI GGCGGA 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 163
Eco72I CACGTG 1 cut(s) 223
FaeI CATG 1 cut(s) 114
FaiI YATR 3 cut(s) 71, 112, 239
FaqI GGGAC 1 cut(s) 353
FatI CATG 1 cut(s) 110
FbaI TGATCA 1 cut(s) 18
FokI GGATG 1 cut(s) 278
FspBI CTAG 1 cut(s) 104
GlaI GCGC 4 cut(s) 136, 170, 336, 391
HaeII RGCGCY 3 cut(s) 172, 338, 393
HaeIII GGCC 4 cut(s) 82, 164, 195, 232
HapII CCGG 5 cut(s) 79, 233, 287, 293, 387
HgaI GACGC 1 cut(s) 38
HhaI GCGC 4 cut(s) 137, 171, 337, 392
Hin1II CATG 1 cut(s) 114
Hin6I GCGC 4 cut(s) 135, 169, 335, 390
HinP1I GCGC 4 cut(s) 135, 169, 335, 390
HinfI GANTC 1 cut(s) 58
HpaII CCGG 5 cut(s) 79, 233, 287, 293, 387
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 3 cut(s) 188, 254, 404
Hpy8I GTNNAC 1 cut(s) 156
Hpy99I CGWCG 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 68, 160
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 4 cut(s) 4, 11, 114, 156
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 141, 153, 256, 277, 283, 341
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 114
HspAI GCGC 4 cut(s) 135, 169, 335, 390
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 208, 255
LpnPI CCDG 9 cut(s) 92, 197, 245, 246, 257, 300, 306, 382, 400
Lsp1109I GCAGC 7 cut(s) 36, 47, 112, 131, 289, 292, 295
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 62
MalI GATC 1 cut(s) 20
MbiI CCGCTC 1 cut(s) 141
MboI GATC 1 cut(s) 18
MboII GAAGA 2 cut(s) 169, 365
MhlI GDGCHC 2 cut(s) 158, 252
MlyI GAGTC 1 cut(s) 67
MroNI GCCGGC 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 203
MspI CCGG 5 cut(s) 79, 233, 287, 293, 387
MvnI CGCG 3 cut(s) 32, 119, 137
MwoI GCNNNNNNNGC 7 cut(s) 41, 141, 153, 256, 277, 283, 341
NaeI GCCGGC 1 cut(s) 80
NdeII GATC 1 cut(s) 18
NgoMIV GCCGGC 1 cut(s) 78
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 3 cut(s) 196, 231, 291
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 62
OliI CACNNNNGTG 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PdiI GCCGGC 1 cut(s) 80
PleI GAGTC 1 cut(s) 66
PmaCI CACGTG 1 cut(s) 223
PmlI CACGTG 1 cut(s) 223
PpsI GAGTC 1 cut(s) 66
Ppu21I YACGTR 1 cut(s) 223
PspCI CACGTG 1 cut(s) 223
PspN4I GGNNCC 3 cut(s) 196, 231, 291
PspPI GGNCC 4 cut(s) 81, 194, 214, 230
RseI CAYNNNNRTG 1 cut(s) 203
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 4 cut(s) 81, 194, 214, 230
SchI GAGTC 1 cut(s) 67
SduI GDGCHC 2 cut(s) 158, 252
SetI ASST 7 cut(s) 9, 105, 213, 225, 249, 261, 366
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
SsiI CCGC 8 cut(s) 32, 50, 119, 141, 217, 263, 296, 324
SspMI CTAG 1 cut(s) 104
TaaI ACNGT 2 cut(s) 68, 160
TaiI ACGT 1 cut(s) 225
TauI GCSGC 3 cut(s) 35, 144, 327
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 7 cut(s) 24, 35, 100, 144, 277, 280, 283
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 292
VneI GTGCAC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.