Rorug05G0110300

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
9826904 .. 9829308
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0110300.1

Sequence Viewer

Length: 399 bp
ATGGAAAAAACCCAACAAGAACAAAACTTGGGTCAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAGCCATCCCAACAAGAAGAACCAGAACCAGAACCAGAAGTAGAAGAAGCAGCTCCTCCTTCTGATGAGCAACCACCCTCCACTCAAATCGATGATCCTCCTGTTCCTGCTCCCCCATTCGATCCCAGCCGAATGATTGGCATTATTAGAAGGAAGTCCTTGATCAAAGAGTTAGCTGCTATGTACCATGCTGAGTGCCTTTCATACTGTCAAGAGCTTTTGGAGCTTCAACGGAAAGGGGATGAGCCACTTATTGACCTGAAACCTCCAGAGGATTTGAAGAAGGATGCAATGCGGCCCCCCAAGCGCCTAAAGAAGAACGCTAGACACTAA

Protein Analysis

132

Amino Acids

15.22

Weight (kDa)

4.52

Isoelectric Point (pI)

101.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 361
AclWI GGATC 2 cut(s) 155, 182
AfaI GTAC 1 cut(s) 251
AgsI TTSAA 2 cut(s) 296, 346
AluBI AGCT 4 cut(s) 119, 242, 283, 292
AluI AGCT 4 cut(s) 119, 242, 283, 292
AlwI GGATC 2 cut(s) 155, 182
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 2 cut(s) 116, 242
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 363
BbvI GCAGC 2 cut(s) 128, 229
BccI CCATC 1 cut(s) 79
BclI TGATCA 1 cut(s) 228
BfaI CTAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 376
BisI GCNGC 3 cut(s) 117, 243, 362
BlsI GCNGC 3 cut(s) 118, 244, 363
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 1 cut(s) 365
BmsI GCATC 1 cut(s) 343
BpmI CTGGAG 1 cut(s) 318
Bsa29I ATCGAT 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 156
BseGI GGATG 3 cut(s) 71, 313, 358
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 2 cut(s) 128, 229
BseYI CCCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 364
BshVI ATCGAT 1 cut(s) 156
BsnI GGCC 1 cut(s) 364
Bsp143I GATC 3 cut(s) 160, 187, 228
BspACI CCGC 1 cut(s) 361
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 250
BspDI ATCGAT 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 365
BspPI GGATC 2 cut(s) 155, 182
BspQI GCTCTTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 363
BssMI GATC 3 cut(s) 160, 187, 228
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 3 cut(s) 71, 313, 358
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 3 cut(s) 163, 190, 231
BstMBI GATC 3 cut(s) 160, 187, 228
BstMWI GCNNNNNNNGC 2 cut(s) 289, 370
BstV1I GCAGC 2 cut(s) 128, 229
Bsu15I ATCGAT 1 cut(s) 156
BsuRI GGCC 1 cut(s) 364
BsuTUI ATCGAT 1 cut(s) 156
BtsCI GGATG 3 cut(s) 71, 313, 358
CfoI GCGC 1 cut(s) 375
Cfr13I GGNCC 1 cut(s) 363
ClaI ATCGAT 1 cut(s) 156
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 254
CviJI RGCY 8 cut(s) 70, 119, 195, 242, 283, 292, 313, 364
CviKI_1 RGCY 8 cut(s) 70, 119, 195, 242, 283, 292, 313, 364
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 258
DpnI GATC 3 cut(s) 162, 189, 230
DpnII GATC 3 cut(s) 160, 187, 228
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
FaeI CATG 1 cut(s) 257
FaiI YATR 3 cut(s) 248, 255, 271
FatI CATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 228
Fnu4HI GCNGC 3 cut(s) 117, 243, 362
FokI GGATG 3 cut(s) 58, 320, 365
Fsp4HI GCNGC 3 cut(s) 117, 243, 362
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 374
GluI GCNGC 3 cut(s) 117, 243, 362
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 1 cut(s) 364
HhaI GCGC 1 cut(s) 375
Hin1II CATG 1 cut(s) 257
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 35, 278, 335
HpyAV CCTTC 3 cut(s) 135, 210, 343
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 370
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 1 cut(s) 257
HspAI GCGC 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 3 cut(s) 160, 187, 228
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 3 cut(s) 124, 181, 289
LpnPI CCDG 8 cut(s) 102, 108, 114, 180, 186, 205, 338, 348
Lsp1109I GCAGC 2 cut(s) 128, 229
LweI GCATC 1 cut(s) 343
MaeI CTAG 1 cut(s) 390
MalI GATC 3 cut(s) 162, 189, 230
MboI GATC 3 cut(s) 160, 187, 228
MnlI CCTC 5 cut(s) 132, 154, 174, 331, 342
MwoI GCNNNNNNNGC 2 cut(s) 289, 370
NdeII GATC 3 cut(s) 160, 187, 228
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 60
PkrI GCNGC 3 cut(s) 118, 244, 363
PspFI CCCAGC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 1 cut(s) 363
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SapI GCTCTTC 1 cut(s) 60
SatI GCNGC 3 cut(s) 117, 243, 362
Sau3AI GATC 3 cut(s) 160, 187, 228
Sau96I GGNCC 1 cut(s) 363
SetI ASST 6 cut(s) 121, 244, 285, 294, 327, 334
SfaNI GCATC 1 cut(s) 343
SsiI CCGC 1 cut(s) 361
SspMI CTAG 1 cut(s) 390
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 156, 186
TauI GCSGC 1 cut(s) 364
TseI GCWGC 2 cut(s) 116, 242
TspDTI ATGAA 1 cut(s) 258
TspGWI ACGGA 1 cut(s) 313
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.