Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Reverse (-)

17118282 .. 17119901

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG090800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATACAGGTCACCATGATTTTATATGAGGTTCTGAGGTTATACCCGCCAGTACCTGTGATGACTAGAACTGTTCAGAAGGAAACACAGCTCGGAAATTTGTTACTCCCACCTGGAGTGCAGTTGTCATTACCAATATTCCTGGTTCAGCAAGACCAACAACTGTGGGGTGAGGACGCAAAGGAATTCAACCCAGAGAGATTTTCAGAAGGAATTTCAAAGGCAACAAAGGGTCAGGTTTCATTTATCCCATTCGGATGGGGTCCTCGGATATGCATTGGACAAAACTTTGGTTTGATGGAAGCAAAAATGGCGTTGTCCTTGATATTACGTAGCTTCACATTTGAGCTTTCCCCATCCTATACTCATGGTCCAATCACGGCTATAACGATTCAACCACAATATGGTGCACACATTATCTTGCAAAAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

144

Amino Acids

16.2

Weight (kDa)

7.88

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	4 - 120	1.2e-34	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	404
AciI	CCGC	1 cut(s)	47
AcsI	RAATTY	3 cut(s)	97, 185, 213
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	3 cut(s)	190, 219, 395
AjnI	CCWGG	2 cut(s)	112, 141
AluBI	AGCT	3 cut(s)	91, 336, 349
AluI	AGCT	3 cut(s)	91, 336, 349
Alw21I	GWGCWC	1 cut(s)	412
Alw44I	GTGCAC	1 cut(s)	408
AlwNI	CAGNNNCTG	1 cut(s)	56
ApaLI	GTGCAC	1 cut(s)	408
ApoI	RAATTY	3 cut(s)	97, 185, 213
AspS9I	GGNCC	2 cut(s)	263, 371
AsuHPI	GGTGA	2 cut(s)	4, 182
AvaII	GGWCC	2 cut(s)	263, 371
BaeGI	GKGCMC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	412
BccI	CCATC	3 cut(s)	252, 292, 364
BceAI	ACGGC	1 cut(s)	396
BciT130I	CCWGG	2 cut(s)	114, 143
BfaI	CTAG	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	114, 143
Bme18I	GGWCC	2 cut(s)	263, 371
BmgT120I	GGNCC	2 cut(s)	263, 371
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	114, 143
BpmI	CTGGAG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	114, 143
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	2 cut(s)	263, 356
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	412
BsgI	GTGCAG	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	412
BslI	CCNNNNNNNGG	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	412
BspACI	CCGC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	266
Bst2UI	CCWGG	2 cut(s)	114, 143
Bst4CI	ACNGT	2 cut(s)	73, 165
BstBAI	YACGTR	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	35
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	263, 356
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	2 cut(s)	114, 143
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	112, 141
BstSLI	GKGCMC	1 cut(s)	412
BstSNI	TACGTA	1 cut(s)	332
BstXI	CCANNNNNNTGG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	263, 356
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	263, 371
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	53
CspCI	CAANNNNNGTGG	2 cut(s)	146, 181
CviAII	CATG	2 cut(s)	16, 368
CviJI	RGCY	4 cut(s)	91, 336, 349, 383
CviKI_1	RGCY	4 cut(s)	91, 336, 349, 383
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	1 cut(s)	35
Eco105I	TACGTA	1 cut(s)	332
Eco47I	GGWCC	2 cut(s)	263, 371
Eco91I	GGTNACC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	112, 141
EcoT22I	ATGCAT	1 cut(s)	278
FaeI	CATG	2 cut(s)	19, 371
FaiI	YATR	9 cut(s)	17, 25, 27, 43, 274, 363, 369, 386, 405
FatI	CATG	2 cut(s)	15, 367
FauI	CCCGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	270, 343
FspBI	CTAG	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	19, 371
HinfI	GANTC	1 cut(s)	391
HphI	GGTGA	2 cut(s)	4, 182
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	6 cut(s)	36, 78, 95, 208, 257, 270
Hpy8I	GTNNAC	1 cut(s)	410
HpyAV	CCTTC	2 cut(s)	73, 203
HpyCH4III	ACNGT	2 cut(s)	73, 165
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	121, 276, 410, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	2 cut(s)	19, 371
LpnPI	CCDG	8 cut(s)	63, 69, 99, 126, 128, 155, 207, 221
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	10, 102
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	4 cut(s)	97, 185, 213, 428
MnlI	CCTC	4 cut(s)	22, 30, 166, 276
Mph1103I	ATGCAT	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	256
MspR9I	CCNGG	2 cut(s)	114, 143
MvaI	CCWGG	2 cut(s)	114, 143
MwoI	GCNNNNNNNGC	1 cut(s)	311
NlaIII	CATG	2 cut(s)	19, 371
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	10
NsiI	ATGCAT	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	391
PflMI	CCANNNNNTGG	1 cut(s)	404
Ppu21I	YACGTR	1 cut(s)	332
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	112, 141
PspEI	GGTNACC	1 cut(s)	10
PspGI	CCWGG	2 cut(s)	112, 141
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	2 cut(s)	263, 371
PspPPI	RGGWCCY	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	256
Sau96I	GGNCC	2 cut(s)	263, 371
ScrFI	CCNGG	2 cut(s)	114, 143
SduI	GDGCHC	1 cut(s)	412
SinI	GGWCC	2 cut(s)	263, 371
SmiMI	CAYNNNNRTG	1 cut(s)	256
SnaBI	TACGTA	1 cut(s)	332
Sse9I	AATT	4 cut(s)	97, 185, 213, 428
SsiI	CCGC	1 cut(s)	47
SspI	AATATT	1 cut(s)	138
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	112, 141
TaaI	ACNGT	2 cut(s)	73, 165
TaiI	ACGT	1 cut(s)	334
TasI	AATT	4 cut(s)	97, 185, 213, 428
TfiI	GAWTC	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	231
Van91I	CCANNNNNTGG	1 cut(s)	404
VneI	GTGCAC	1 cut(s)	408
VpaK11BI	GGWCC	2 cut(s)	263, 371
XapI	RAATTY	3 cut(s)	97, 185, 213
XspI	CTAG	1 cut(s)	66
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.