Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Reverse (-)

16628112 .. 16629662

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55720

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAAGGCAATTAGCAAAGAAATAGAAGCAACATTGAAGCATATTATTAGTAAAAAAGAGGAGGCAATGAAAACTGGTGATGAAGCCTCTAAGAATGACTTATTAGGGATACTTCTGGAATCCAATTGGAAAGAAATTCGACAGTATGGGGGGAACAAGAATGTTGGAATGAGCATAGAAGAGGTGATTGGAGAATGTAAGCTGTTTTACTTTGCCGGGGCAGAGACTACCTCAATCTTGCTTACTTGGACTATGATTCTACTCTGTAGATATCCAAATTGGCAGGCTCGTGCCAGAGAAGAGGTTTTTCAAGTATTTGGCAACAAGAAACCAGATTTTGATGGGCTCGTTCACCTAAAAGTTGTCACCATGATTTTATATGAGGTTCTGAGGTTATACCCGCCAGTACCTGTGATGACTCGAACTGTTCAGAAGGAAACACAGCTCGGAAATTTGTTACTCCCACCTGGAGTGCAGTTGTCATTACCAATATTCCTGGTTCAGCAAGACCAACAGCTGTGGGGTGAGGACGCAAAGGAATTCAACCCAGAGAGATTTTCAGAAGGAATTTCCAAGGCAACAAAGGGTCAGGTTTCATTTATCCCATTCGGATGGGGTCCTCGGATATGCATTGGACAAAACTTTGGTTTGATGGAAGCAAAAATGGTGTTGTCCTTGATATTACGTAGCTTCACATTTGAGCTTTCCCCATCCTATACTCATGGTCCAATCACGGCTATAACGATTCAACCACAATATGGTGCACACATTATCTTGCAAAAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

262

Amino Acids

29.64

Weight (kDa)

7.68

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 238	1.5e-59	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	758
AciI	CCGC	1 cut(s)	401
AcsI	RAATTY	4 cut(s)	135, 451, 539, 567
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	758
AgsI	TTSAA	4 cut(s)	37, 311, 544, 749
AjnI	CCWGG	2 cut(s)	466, 495
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	5 cut(s)	202, 445, 517, 690, 703
AluI	AGCT	5 cut(s)	202, 445, 517, 690, 703
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	1 cut(s)	218
Alw44I	GTGCAC	1 cut(s)	762
AlwNI	CAGNNNCTG	1 cut(s)	410
ApaLI	GTGCAC	1 cut(s)	762
ApoI	RAATTY	4 cut(s)	135, 451, 539, 567
AspS9I	GGNCC	2 cut(s)	617, 725
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	5 cut(s)	89, 196, 344, 358, 536
AvaII	GGWCC	2 cut(s)	617, 725
BaeGI	GKGCMC	1 cut(s)	766
BanII	GRGCYC	1 cut(s)	348
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	766
BccI	CCATC	4 cut(s)	335, 606, 646, 718
BceAI	ACGGC	1 cut(s)	750
BciT130I	CCWGG	2 cut(s)	468, 497
BciVI	GTATCC	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	102
Bme1390I	CCNGG	3 cut(s)	217, 468, 497
Bme18I	GGWCC	2 cut(s)	617, 725
BmgT120I	GGNCC	2 cut(s)	617, 725
BmiI	GGNNCC	1 cut(s)	618
BmrFI	CCNGG	3 cut(s)	217, 468, 497
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpmI	CTGGAG	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	217
BsaAI	YACGTR	1 cut(s)	686
BsaJI	CCNNGG	3 cut(s)	216, 573, 620
Bsc4I	CCNNNNNNNGG	1 cut(s)	758
Bse1I	ACTGG	2 cut(s)	79, 404
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	468, 497
BseDI	CCNNGG	3 cut(s)	216, 573, 620
BseGI	GGATG	2 cut(s)	617, 710
BseLI	CCNNNNNNNGG	1 cut(s)	758
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	79, 404
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	766
BsgI	GTGCAG	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	766
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	758
BsmAI	GTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	348, 766
BspACI	CCGC	1 cut(s)	401
BspCNI	CTCAG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	618
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	79, 404
BssECI	CCNNGG	3 cut(s)	216, 573, 620
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	573
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	468, 497
Bst4CI	ACNGT	3 cut(s)	144, 427, 786
Bst6I	CTCTTC	2 cut(s)	174, 294
BstBAI	YACGTR	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	90, 389
BstF5I	GGATG	2 cut(s)	617, 710
BstMAI	GTCTC	1 cut(s)	218
BstNI	CCWGG	2 cut(s)	468, 497
BstSCI	CCNGG	3 cut(s)	215, 466, 495
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	766
BstSNI	TACGTA	1 cut(s)	686
BstXI	CCANNNNNNTGG	1 cut(s)	612
BsuI	GTATCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	617, 710
Cac8I	GCNNGC	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	617, 725
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	407
CspCI	CAANNNNNGTGG	2 cut(s)	500, 535
CviAII	CATG	2 cut(s)	370, 722
CviJI	RGCY	9 cut(s)	86, 202, 287, 346, 445, 517, 690, 703, 737
CviKI_1	RGCY	9 cut(s)	86, 202, 287, 346, 445, 517, 690, 703, 737
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	2 cut(s)	90, 389
Eam1104I	CTCTTC	2 cut(s)	174, 294
EarI	CTCTTC	2 cut(s)	174, 294
Eco105I	TACGTA	1 cut(s)	686
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	348
Eco32I	GATATC	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	617, 725
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRI	GAATTC	1 cut(s)	539
EcoRII	CCWGG	2 cut(s)	466, 495
EcoRV	GATATC	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	573
EcoT22I	ATGCAT	1 cut(s)	632
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	2 cut(s)	373, 725
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	2 cut(s)	369, 721
FauI	CCCGC	1 cut(s)	408
FokI	GGATG	2 cut(s)	624, 697
FriOI	GRGCYC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	489
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	539
Hin1II	CATG	2 cut(s)	373, 725
HinfI	GANTC	4 cut(s)	119, 256, 418, 745
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	5 cut(s)	89, 196, 344, 358, 536
Hpy166II	GTNNAC	2 cut(s)	352, 764
Hpy188I	TCNGA	6 cut(s)	390, 432, 449, 562, 611, 624
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	2 cut(s)	352, 764
HpyAV	CCTTC	2 cut(s)	427, 557
HpyCH4III	ACNGT	3 cut(s)	144, 427, 786
HpyCH4IV	ACGT	1 cut(s)	685
HpyCH4V	TGCA	4 cut(s)	475, 630, 764, 778
HpyF3I	CTNAG	2 cut(s)	90, 389
HpySE526I	ACGT	1 cut(s)	685
Hsp92II	CATG	2 cut(s)	373, 725
MaeII	ACGT	1 cut(s)	685
MaeIII	GTNAC	2 cut(s)	364, 456
MboII	GAAGA	2 cut(s)	191, 311
MfeI	CAATTG	1 cut(s)	124
MhlI	GDGCHC	2 cut(s)	348, 766
MluCI	AATT	7 cut(s)	9, 124, 135, 277, 451, 539, 567
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	145
Mph1103I	ATGCAT	1 cut(s)	632
MslI	CAYNNNNRTG	1 cut(s)	610
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	3 cut(s)	217, 468, 497
MunI	CAATTG	1 cut(s)	124
MvaI	CCWGG	2 cut(s)	468, 497
NciI	CCSGG	1 cut(s)	217
NlaIII	CATG	2 cut(s)	373, 725
NlaIV	GGNNCC	1 cut(s)	618
NmuCI	GTSAC	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	632
PcsI	WCGNNNNNNNCGW	1 cut(s)	740
PfeI	GAWTC	3 cut(s)	119, 256, 745
PflMI	CCANNNNNTGG	1 cut(s)	758
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Ppu21I	YACGTR	1 cut(s)	686
PpuMI	RGGWCCY	1 cut(s)	617
Psp5II	RGGWCCY	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	466, 495
PspGI	CCWGG	2 cut(s)	466, 495
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	2 cut(s)	617, 725
PspPPI	RGGWCCY	1 cut(s)	617
PstNI	CAGNNNCTG	1 cut(s)	410
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
RseI	CAYNNNNRTG	1 cut(s)	610
Sau96I	GGNCC	2 cut(s)	617, 725
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	3 cut(s)	217, 468, 497
SduI	GDGCHC	2 cut(s)	348, 766
SfcI	CTRYAG	1 cut(s)	265
SinI	GGWCC	2 cut(s)	617, 725
SmiMI	CAYNNNNRTG	1 cut(s)	610
SnaBI	TACGTA	1 cut(s)	686
Sse9I	AATT	7 cut(s)	9, 124, 135, 277, 451, 539, 567
SsiI	CCGC	1 cut(s)	401
SspI	AATATT	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	215, 466, 495
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	3 cut(s)	144, 427, 786
TaiI	ACGT	1 cut(s)	688
TaqI	TCGA	2 cut(s)	139, 421
TasI	AATT	7 cut(s)	9, 124, 135, 277, 451, 539, 567
TfiI	GAWTC	3 cut(s)	119, 256, 745
TseFI	GTSAC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	17, 83, 96, 585
Van91I	CCANNNNNTGG	1 cut(s)	758
VneI	GTGCAC	1 cut(s)	762
VpaK11BI	GGWCC	2 cut(s)	617, 725
XapI	RAATTY	4 cut(s)	135, 451, 539, 567
Zsp2I	ATGCAT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.