Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Forward (+)

22445713 .. 22447077

Gene Structure 1365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG220800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAAGTAACATTGCCTAGTTGGGTAGCGCTGAGCCTTGTGTTTATTAGCATAATAGTAAGATGGGCATGGAGTGTACTGGATTGGGTTTGGCTGAAGCCGAAGAAGCTAGAAAGATGTTTGAGGGAGCAAGGCCTTCAAGGCAATTCCTACAGGTTCTTTTATGGAGACTTGAAGGAGAACTCTATCCTGCTCAAACATGCGAAATCCAAACCCATGAACCTCTCCACCTCACATGACATAGCACCACGACTCATCCCTTTTCTCGATCAAACCGTAAAAACTTATGGTAAGAACTCTTTTGTTTGGATGGGCCCCGTACCAAGGGTGAACATTATGAATCCTGAAGATATGAAAGATGTCTTCACAAAACTTGATGATTTTCCTAAGCCAGTTTCAAACCCACTTTTCAAGTTGCTAGCAACGGGTGTTGCAAGCTATGAAGGTGAAAAATGGGCTAAACACAGGAGGATCATCAACCCATCATTCCATGTAGAGAAACTAAAGCAAATGTTACCCGCCTTTCACAAAAGTTGTGATGAGATGATTAAGGAATGGGAAAGCTTGGCGTCCAAAGAGGGCTCGTCATGTCTGTTGGATGTTTGGCCATCTCTACAACACTTGACGGCCGATGTGATTTCTCGAACAGCATTTGGAAGTAGCTATCAGGAAGGAAGGAAAATATTTGAACTCCTCAAAGAGCAAGCAATGCTTGTAATAAATGCATTACAAAGTGTTTACATACCAGGATGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

252

Amino Acids

29.07

Weight (kDa)

9.23

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	89 - 230	4.2e-19	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	519
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	2 cut(s)	605, 627
AcuI	CTGAAG	2 cut(s)	116, 366
AcyI	GRCGYC	1 cut(s)	569
AfaI	GTAC	2 cut(s)	78, 321
AfeI	AGCGCT	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	5 cut(s)	140, 175, 399, 412, 689
AjnI	CCWGG	1 cut(s)	745
AluBI	AGCT	4 cut(s)	109, 438, 564, 663
AluI	AGCT	4 cut(s)	109, 438, 564, 663
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	479
Aor51HI	AGCGCT	1 cut(s)	30
AoxI	GGCC	4 cut(s)	133, 313, 605, 627
ApaI	GGGCCC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	313, 314
AsuHPI	GGTGA	2 cut(s)	340, 458
AsuNHI	GCTAGC	1 cut(s)	418
BaeGI	GKGCMC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	607
BanII	GRGCYC	2 cut(s)	317, 584
BbsI	GAAGAC	1 cut(s)	355
BccI	CCATC	5 cut(s)	57, 304, 490, 616, 744
BceAI	ACGGC	1 cut(s)	642
BciT130I	CCWGG	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	3 cut(s)	18, 110, 419
BfmI	CTRYAG	1 cut(s)	151
BfoI	RGCGCY	1 cut(s)	32
BglI	GCCNNNNNGGC	1 cut(s)	141
BlpI	GCTNAGC	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	747
BmgT120I	GGNCC	2 cut(s)	313, 314
BmiI	GGNNCC	2 cut(s)	315, 316
BmrFI	CCNGG	1 cut(s)	747
BmtI	GCTAGC	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	355
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu1102I	GCTNAGC	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	569
BsaJI	CCNNGG	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse1I	ACTGG	2 cut(s)	84, 392
Bse3DI	GCAATG	2 cut(s)	11, 714
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	4 cut(s)	255, 315, 604, 755
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMI	GCAATG	2 cut(s)	11, 714
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	84, 392
BseRI	GAGGAG	1 cut(s)	683
BseSI	GKGCMC	1 cut(s)	317
BseX3I	CGGCCG	1 cut(s)	627
Bsh1285I	CGRYCG	1 cut(s)	630
BshFI	GGCC	4 cut(s)	135, 315, 607, 629
BsiEI	CGRYCG	1 cut(s)	630
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	162
BsnI	GGCC	4 cut(s)	135, 315, 607, 629
Bsp120I	GGGCCC	1 cut(s)	313
Bsp1286I	GDGCHC	2 cut(s)	317, 584
Bsp143I	GATC	2 cut(s)	268, 471
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	1 cut(s)	519
BspANI	GGCC	4 cut(s)	135, 315, 607, 629
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	315, 316
BspOI	GCTAGC	1 cut(s)	422
BspPI	GGATC	1 cut(s)	479
BsrDI	GCAATG	2 cut(s)	11, 714
BsrI	ACTGG	2 cut(s)	84, 392
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	2 cut(s)	268, 471
BssNI	GRCGYC	1 cut(s)	569
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	1 cut(s)	277
BstACI	GRCGYC	1 cut(s)	569
BstAPI	GCANNNNNTGC	1 cut(s)	709
BstC8I	GCNNGC	3 cut(s)	420, 436, 705
BstDEI	CTNAG	2 cut(s)	32, 387
BstF5I	GGATG	4 cut(s)	255, 315, 604, 755
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	271, 474
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	2 cut(s)	268, 471
BstMCI	CGRYCG	1 cut(s)	630
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 141, 709
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	317
BstV2I	GAAGAC	1 cut(s)	355
BstZI	CGGCCG	1 cut(s)	627
BsuRI	GGCC	4 cut(s)	135, 315, 607, 629
BtsCI	GGATG	4 cut(s)	255, 315, 604, 755
Cac8I	GCNNGC	3 cut(s)	420, 436, 705
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	313, 314
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	2 cut(s)	77, 320
CviAII	CATG	6 cut(s)	69, 200, 217, 236, 491, 588
CviQI	GTAC	2 cut(s)	77, 320
DdeI	CTNAG	2 cut(s)	32, 387
DpnI	GATC	2 cut(s)	270, 473
DpnII	GATC	2 cut(s)	268, 471
EaeI	YGGCCR	2 cut(s)	605, 627
EagI	CGGCCG	1 cut(s)	627
EclXI	CGGCCG	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	317, 584
Eco47III	AGCGCT	1 cut(s)	30
Eco52I	CGGCCG	1 cut(s)	627
Eco57I	CTGAAG	2 cut(s)	116, 366
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	2 cut(s)	317, 584
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	6 cut(s)	72, 203, 220, 239, 494, 591
FalI	AAGNNNNNCTT	2 cut(s)	696, 728
FatI	CATG	6 cut(s)	68, 199, 216, 235, 490, 587
FauI	CCCGC	1 cut(s)	526
FokI	GGATG	3 cut(s)	242, 322, 611
FriOI	GRGCYC	2 cut(s)	317, 584
FspBI	CTAG	3 cut(s)	18, 110, 419
GlaI	GCGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	4 cut(s)	135, 315, 607, 629
HgaI	GACGC	1 cut(s)	558
HhaI	GCGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	569
Hin1II	CATG	6 cut(s)	72, 203, 220, 239, 494, 591
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	562
HinfI	GANTC	2 cut(s)	252, 340
HphI	GGTGA	2 cut(s)	340, 458
Hpy166II	GTNNAC	3 cut(s)	77, 331, 739
Hpy188III	TCNNGA	4 cut(s)	266, 344, 642, 668
Hpy8I	GTNNAC	3 cut(s)	77, 331, 739
HpyAV	CCTTC	5 cut(s)	146, 169, 437, 665, 669
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	2 cut(s)	434, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 141, 709
HpyF3I	CTNAG	2 cut(s)	32, 387
Hsp92I	GRCGYC	1 cut(s)	569
Hsp92II	CATG	6 cut(s)	72, 203, 220, 239, 494, 591
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	268, 471
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	8 cut(s)	65, 139, 203, 357, 405, 451, 653, 732
MaeI	CTAG	3 cut(s)	18, 110, 419
MaeIII	GTNAC	2 cut(s)	7, 513
MalI	GATC	2 cut(s)	270, 473
MboI	GATC	2 cut(s)	268, 471
MboII	GAAGA	3 cut(s)	115, 355, 359
MhlI	GDGCHC	2 cut(s)	317, 584
MlsI	TGGCCA	1 cut(s)	607
MluCI	AATT	1 cut(s)	145
MluNI	TGGCCA	1 cut(s)	607
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	7 cut(s)	117, 233, 241, 462, 571, 704, 747
Mox20I	TGGCCA	1 cut(s)	607
Mph1103I	ATGCAT	1 cut(s)	727
MscI	TGGCCA	1 cut(s)	607
MseI	TTAA	1 cut(s)	549
Msp20I	TGGCCA	1 cut(s)	607
MspR9I	CCNGG	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	3 cut(s)	106, 141, 709
NdeII	GATC	2 cut(s)	268, 471
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	6 cut(s)	72, 203, 220, 239, 494, 591
NlaIV	GGNNCC	2 cut(s)	315, 316
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	2 cut(s)	315, 316
PspOMI	GGGCCC	1 cut(s)	313
PspPI	GGNCC	2 cut(s)	313, 314
RsaI	GTAC	2 cut(s)	78, 321
RsaNI	GTAC	2 cut(s)	77, 320
SaqAI	TTAA	1 cut(s)	549
Sau3AI	GATC	2 cut(s)	268, 471
Sau96I	GGNCC	2 cut(s)	313, 314
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	747
SduI	GDGCHC	2 cut(s)	317, 584
SetI	ASST	9 cut(s)	111, 158, 225, 233, 440, 448, 566, 665, 758
SfcI	CTRYAG	1 cut(s)	151
Sse9I	AATT	1 cut(s)	145
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	519
SspI	AATATT	1 cut(s)	684
SspMI	CTAG	3 cut(s)	18, 110, 419
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	267, 643
TasI	AATT	1 cut(s)	145
TatI	WGTACW	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TspDTI	ATGAA	4 cut(s)	233, 353, 368, 456
XceI	RCATGY	1 cut(s)	203
XspI	CTAG	3 cut(s)	18, 110, 419
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.