Rroxscaffold_4G00322440

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
52706876 .. 52710636
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322440.1

Sequence Viewer

Length: 1230 bp
ATGGAAGTGTCATTAGGCAGCATAGCAGTATCCGTTGTTTTGTTGATTATAGCTTCATCATGGGCATGGAGGGTGCTGAATTGGGTGTGGTTGAAGCCAAAGAAGCTAGAAAACTGTCTGAGGCAGCAAGGTTTTGCCGGAAACTCGTACCGCCTTTTGATTGGCGATCTTAAGGAGAACATCAAGGTGACAAAGGAAGCCACTTCAAAACCCATGAACCTCTCCGATGATGTAGCCCCTCGTGTCCTGCCATTTCTCCATCAAACCATTAACAAACATGGAGATGTGATTTCTAGGACAGCATTTGGTAGTAGTTATGAAGAAGGGAGAACAATATTTGAACTCCAGAAAGAACAAGTACAACTCTTAAGTAAAGAACAAGTACAATTCATTGTTTTCATTCCAGGATTGAGGTTTCTACCAACTAAGTTGAACAGGAGGATGAAGGCAATTAGCAAAGAAATAGAAGCTACACTGAAGCATATTATCAGTAAAAAAGAGGAGGCAATGAAAACTGGTGATGAAGCCTCCAAGAATGACTTATTAGGGATACTTCTGGAATCCAATTGGAAAGAAATTCAACAGTATGGGGGGAACAAGAATGTTGGAATGACCATTGAAGATGTGATTGGAGAATGTAAGCTGTTTTACTTTGCCGGGGCAGAGACTACCTCAATCTTGCTTACTTGGACTATGATTCTACTCTGTAGATATCCAAATTGGCAGGCTCGTGCCAGAGAAGAGGTTTTTCAAGTATTTGGCAACAAGAAACCAGATTTTGATGGGCTCGTTCACCTAAAAGTTGTCACCATGATTTTATATGAGGTTCTGAGGTTATACCCACCAGTACCTGTGATGACTCGAACTGTTCAGAAGGAAACACAGCTCGGAAATTTGTTACTCCCAGCTGGAGTGCAGTTGTCATTACCCATACTCCTGGTTCAGCAAGAGCAACAACTGTGGGGTGAGGACGCAAAGGAATTCAACCCAGAGAGATTTTCAGAAGGAATTTCAAAGGCAACGAAGGGTCAGCTTTCATTTATCCCATTCGGATGGGGTCCTCGGATATGCATTGGACAAAACATTGGTTTGATGGAAGCAAAAATGGCGTTGTCCTTGATATTACGTAGCTTCACATTTGAGCTTTCCCCATCCTATACTCATGGTCCAATCACGGCTATAACGATTCAACCACAATATGGTGCACACATTATCTTGCAAAAACTGTAA

Protein Analysis

409

Amino Acids

46.27

Weight (kDa)

9.04

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 95 - 385 1.6e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1199
AciI CCGC 1 cut(s) 151
AcsI RAATTY 4 cut(s) 576, 892, 980, 1008
AcuI CTGAAG 1 cut(s) 497
AfaI GTAC 4 cut(s) 149, 360, 384, 849
AfiI CCNNNNNNNGG 1 cut(s) 1199
AflII CTTAAG 2 cut(s) 170, 367
AjnI CCWGG 2 cut(s) 403, 936
AjuI GAANNNNNNNTTGG 2 cut(s) 612, 644
AluBI AGCT 9 cut(s) 53, 106, 470, 643, 886, 908, 1033, 1131, 1144
AluI AGCT 9 cut(s) 53, 106, 470, 643, 886, 908, 1033, 1131, 1144
Alw21I GWGCWC 1 cut(s) 1207
Alw26I GTCTC 1 cut(s) 659
Alw44I GTGCAC 1 cut(s) 1203
AlwNI CAGNNNCTG 1 cut(s) 851
ApaLI GTGCAC 1 cut(s) 1203
ApeKI GCWGC 2 cut(s) 18, 124
ApoI RAATTY 4 cut(s) 576, 892, 980, 1008
AspS9I GGNCC 2 cut(s) 1058, 1166
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 5 cut(s) 199, 530, 785, 799, 977
AvaII GGWCC 2 cut(s) 1058, 1166
BaeGI GKGCMC 1 cut(s) 1207
BanII GRGCYC 1 cut(s) 789
BauI CACGAG 2 cut(s) 240, 729
Bbv12I GWGCWC 1 cut(s) 1207
BbvI GCAGC 2 cut(s) 30, 136
BccI CCATC 5 cut(s) 267, 776, 1047, 1087, 1159
BceAI ACGGC 1 cut(s) 1191
BciT130I CCWGG 2 cut(s) 405, 938
BciVI GTATCC 2 cut(s) 40, 543
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 1 cut(s) 659
BfaI CTAG 2 cut(s) 107, 294
BfmI CTRYAG 1 cut(s) 706
BfrI CTTAAG 2 cut(s) 170, 367
BfuI GTATCC 2 cut(s) 40, 543
BisI GCNGC 2 cut(s) 19, 125
BlsI GCNGC 2 cut(s) 20, 126
Bme1390I CCNGG 3 cut(s) 405, 658, 938
Bme18I GGWCC 2 cut(s) 1058, 1166
BmgT120I GGNCC 2 cut(s) 1058, 1166
BmiI GGNNCC 1 cut(s) 1059
BmrFI CCNGG 3 cut(s) 405, 658, 938
BplI GAGNNNNNCTC 2 cut(s) 656, 688
BpmI CTGGAG 2 cut(s) 329, 930
BpuMI CCSGG 1 cut(s) 658
BsaAI YACGTR 1 cut(s) 1127
BsaJI CCNNGG 2 cut(s) 657, 1061
BsaXI ACNNNNNCTCC 2 cut(s) 918, 948
Bsc4I CCNNNNNNNGG 1 cut(s) 1199
Bse1I ACTGG 2 cut(s) 520, 845
Bse3DI GCAATG 1 cut(s) 513
BseBI CCWGG 2 cut(s) 405, 938
BseDI CCNNGG 2 cut(s) 657, 1061
BseGI GGATG 3 cut(s) 447, 1058, 1151
BseLI CCNNNNNNNGG 1 cut(s) 1199
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 2 cut(s) 110, 821
BseNI ACTGG 2 cut(s) 520, 845
BseRI GAGGAG 1 cut(s) 515
BseSI GKGCMC 1 cut(s) 1207
BseXI GCAGC 2 cut(s) 30, 136
BseYI CCCAGC 1 cut(s) 904
BsgI GTGCAG 1 cut(s) 935
BsiHKAI GWGCWC 1 cut(s) 1207
BsiSI CCGG 2 cut(s) 138, 657
BslI CCNNNNNNNGG 1 cut(s) 1199
BsmAI GTCTC 1 cut(s) 659
Bsp1286I GDGCHC 2 cut(s) 789, 1207
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 111, 822
BspLI GGNNCC 1 cut(s) 1059
BspTI CTTAAG 2 cut(s) 170, 367
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 2 cut(s) 520, 845
BssECI CCNNGG 2 cut(s) 657, 1061
BssMI GATC 1 cut(s) 166
BssSI CACGAG 2 cut(s) 240, 729
Bst2BI CACGAG 2 cut(s) 240, 729
Bst2UI CCWGG 2 cut(s) 405, 938
Bst4CI ACNGT 5 cut(s) 116, 585, 868, 960, 1227
Bst6I CTCTTC 1 cut(s) 735
BstAFI CTTAAG 2 cut(s) 170, 367
BstBAI YACGTR 1 cut(s) 1127
BstC8I GCNNGC 1 cut(s) 726
BstDEI CTNAG 3 cut(s) 119, 426, 830
BstF5I GGATG 3 cut(s) 447, 1058, 1151
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 659
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 103, 1106
BstNI CCWGG 2 cut(s) 405, 938
BstSCI CCNGG 3 cut(s) 403, 656, 936
BstSFI CTRYAG 1 cut(s) 706
BstSLI GKGCMC 1 cut(s) 1207
BstSNI TACGTA 1 cut(s) 1127
BstV1I GCAGC 2 cut(s) 30, 136
BstXI CCANNNNNNTGG 2 cut(s) 937, 1053
BsuI GTATCC 2 cut(s) 40, 543
BtsCI GGATG 3 cut(s) 447, 1058, 1151
BtsIMutI CAGTG 1 cut(s) 473
Cac8I GCNNGC 1 cut(s) 726
CaiI CAGNNNCTG 1 cut(s) 851
Cfr13I GGNCC 2 cut(s) 1058, 1166
CseI GACGC 1 cut(s) 980
Csp6I GTAC 4 cut(s) 148, 359, 383, 848
CspCI CAANNNNNGTGG 2 cut(s) 941, 976
CviAII CATG 6 cut(s) 60, 66, 214, 278, 811, 1163
CviQI GTAC 4 cut(s) 148, 359, 383, 848
DdeI CTNAG 3 cut(s) 119, 426, 830
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 735
EarI CTCTTC 1 cut(s) 735
Eco105I TACGTA 1 cut(s) 1127
Eco24I GRGCYC 1 cut(s) 789
Eco32I GATATC 1 cut(s) 713
Eco47I GGWCC 2 cut(s) 1058, 1166
Eco57I CTGAAG 1 cut(s) 497
EcoO109I RGGNCCY 1 cut(s) 1058
EcoRI GAATTC 1 cut(s) 980
EcoRII CCWGG 2 cut(s) 403, 936
EcoRV GATATC 1 cut(s) 713
EcoT22I ATGCAT 1 cut(s) 1073
EcoT38I GRGCYC 1 cut(s) 789
FaeI CATG 6 cut(s) 63, 69, 217, 281, 814, 1166
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FatI CATG 6 cut(s) 59, 65, 213, 277, 810, 1162
Fnu4HI GCNGC 2 cut(s) 19, 125
FokI GGATG 3 cut(s) 454, 1065, 1138
FriOI GRGCYC 1 cut(s) 789
Fsp4HI GCNGC 2 cut(s) 19, 125
FspBI CTAG 2 cut(s) 107, 294
GluI GCNGC 2 cut(s) 19, 125
GsaI CCCAGC 1 cut(s) 908
GsuI CTGGAG 2 cut(s) 329, 930
HapII CCGG 2 cut(s) 138, 657
HgaI GACGC 1 cut(s) 980
Hin1II CATG 6 cut(s) 63, 69, 217, 281, 814, 1166
HinfI GANTC 4 cut(s) 560, 697, 859, 1186
HpaII CCGG 2 cut(s) 138, 657
HphI GGTGA 5 cut(s) 199, 530, 785, 799, 977
Hpy166II GTNNAC 2 cut(s) 793, 1205
Hpy188I TCNGA 8 cut(s) 120, 226, 831, 873, 890, 1003, 1052, 1065
Hpy188III TCNNGA 2 cut(s) 346, 557
Hpy8I GTNNAC 2 cut(s) 793, 1205
HpyAV CCTTC 5 cut(s) 317, 439, 868, 998, 1018
HpyCH4III ACNGT 5 cut(s) 116, 585, 868, 960, 1227
HpyCH4IV ACGT 1 cut(s) 1126
HpyCH4V TGCA 4 cut(s) 916, 1071, 1205, 1219
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 1106
HpyF3I CTNAG 3 cut(s) 119, 426, 830
HpySE526I ACGT 1 cut(s) 1126
Hsp92II CATG 6 cut(s) 63, 69, 217, 281, 814, 1166
Kzo9I GATC 1 cut(s) 166
Lsp1109I GCAGC 2 cut(s) 30, 136
MaeI CTAG 2 cut(s) 107, 294
MaeII ACGT 1 cut(s) 1126
MaeIII GTNAC 3 cut(s) 187, 805, 897
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 3 cut(s) 332, 632, 752
MfeI CAATTG 1 cut(s) 565
MhlI GDGCHC 2 cut(s) 789, 1207
MluCI AATT 9 cut(s) 79, 386, 450, 565, 576, 718, 892, 980, 1008
MlyI GAGTC 1 cut(s) 853
MmeI TCCRAC 1 cut(s) 586
Mph1103I ATGCAT 1 cut(s) 1073
MseI TTAA 3 cut(s) 171, 270, 368
MslI CAYNNNNRTG 4 cut(s) 64, 185, 282, 1051
MspA1I CMGCKG 1 cut(s) 908
MspCI CTTAAG 2 cut(s) 170, 367
MspI CCGG 2 cut(s) 138, 657
MspR9I CCNGG 3 cut(s) 405, 658, 938
MunI CAATTG 1 cut(s) 565
MvaI CCWGG 2 cut(s) 405, 938
MwoI GCNNNNNNNGC 2 cut(s) 103, 1106
NciI CCSGG 1 cut(s) 658
NdeII GATC 1 cut(s) 166
NlaIII CATG 6 cut(s) 63, 69, 217, 281, 814, 1166
NlaIV GGNNCC 1 cut(s) 1059
NmuCI GTSAC 2 cut(s) 187, 805
NsiI ATGCAT 1 cut(s) 1073
PcsI WCGNNNNNNNCGW 1 cut(s) 1181
PfeI GAWTC 3 cut(s) 560, 697, 1186
PflMI CCANNNNNTGG 1 cut(s) 1199
PfoI TCCNGGA 1 cut(s) 403
PkrI GCNGC 2 cut(s) 20, 126
PleI GAGTC 1 cut(s) 853
PpsI GAGTC 1 cut(s) 853
Ppu21I YACGTR 1 cut(s) 1127
PpuMI RGGWCCY 1 cut(s) 1058
Psp5II RGGWCCY 1 cut(s) 1058
Psp6I CCWGG 2 cut(s) 403, 936
PspFI CCCAGC 1 cut(s) 904
PspGI CCWGG 2 cut(s) 403, 936
PspN4I GGNNCC 1 cut(s) 1059
PspPI GGNCC 2 cut(s) 1058, 1166
PspPPI RGGWCCY 1 cut(s) 1058
PstNI CAGNNNCTG 1 cut(s) 851
PvuII CAGCTG 1 cut(s) 908
RsaI GTAC 4 cut(s) 149, 360, 384, 849
RsaNI GTAC 4 cut(s) 148, 359, 383, 848
RseI CAYNNNNRTG 4 cut(s) 64, 185, 282, 1051
SaqAI TTAA 3 cut(s) 171, 270, 368
SatI GCNGC 2 cut(s) 19, 125
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 2 cut(s) 1058, 1166
SchI GAGTC 1 cut(s) 853
ScrFI CCNGG 3 cut(s) 405, 658, 938
SduI GDGCHC 2 cut(s) 789, 1207
SfcI CTRYAG 1 cut(s) 706
SinI GGWCC 2 cut(s) 1058, 1166
SmiMI CAYNNNNRTG 4 cut(s) 64, 185, 282, 1051
SmlI CTYRAG 2 cut(s) 170, 367
SmoI CTYRAG 2 cut(s) 170, 367
SnaBI TACGTA 1 cut(s) 1127
Sse9I AATT 9 cut(s) 79, 386, 450, 565, 576, 718, 892, 980, 1008
SsiI CCGC 1 cut(s) 151
SspI AATATT 1 cut(s) 336
SspMI CTAG 2 cut(s) 107, 294
StyD4I CCNGG 3 cut(s) 403, 656, 936
TaaI ACNGT 5 cut(s) 116, 585, 868, 960, 1227
TaiI ACGT 1 cut(s) 1129
TaqI TCGA 1 cut(s) 862
TasI AATT 9 cut(s) 79, 386, 450, 565, 576, 718, 892, 980, 1008
TatI WGTACW 2 cut(s) 358, 382
TfiI GAWTC 3 cut(s) 560, 697, 1186
Tru1I TTAA 3 cut(s) 171, 270, 368
Tru9I TTAA 3 cut(s) 171, 270, 368
TscAI CASTG 1 cut(s) 480
TseFI GTSAC 2 cut(s) 187, 805
TseI GCWGC 2 cut(s) 18, 124
Tsp45I GTSAC 2 cut(s) 187, 805
TspDTI ATGAA 9 cut(s) 45, 230, 333, 379, 388, 458, 524, 537, 1026
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 480
Van91I CCANNNNNTGG 1 cut(s) 1199
Vha464I CTTAAG 2 cut(s) 170, 367
VneI GTGCAC 1 cut(s) 1203
VpaK11BI GGWCC 2 cut(s) 1058, 1166
XapI RAATTY 4 cut(s) 576, 892, 980, 1008
XspI CTAG 2 cut(s) 107, 294
Zsp2I ATGCAT 1 cut(s) 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.